FFCP PHASE1:Hg19::chr4:76944621..76944671,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3627 | |EntrezGene=3627 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10637 | |HGNC=10637 | ||
|TSSclassifier=strong | |||
|UniProt=P02778 | |UniProt=P02778 | ||
|association_with_transcript=0bp_to_ENST00000306602,uc003hjl.3_5end | |association_with_transcript=0bp_to_ENST00000306602,uc003hjl.3_5end | ||
|cluster_id=chr4:76944621..76944671,- | |||
|coexpression_cluster_id=C7 | |||
|description=CAGE_peak_1_at_CXCL10_5end | |description=CAGE_peak_1_at_CXCL10_5end | ||
|id=chr4:76944621..76944671,- | |id=chr4:76944621..76944671,- | ||
|ontology_enrichment_celltype=CL:0002057!7.43e-28!42;CL:0000860!3.08e-26!45;CL:0002009!2.86e-23!65;CL:0002194!5.56e-23!63;CL:0000576!5.56e-23!63;CL:0000040!5.56e-23!63;CL:0000559!5.56e-23!63;CL:0000557!6.66e-20!71;CL:0000839!6.80e-19!70;CL:0000766!2.21e-17!76;CL:0002087!1.57e-16!119;CL:0002031!7.68e-14!124;CL:0000738!6.14e-13!140;CL:0000763!4.60e-09!112;CL:0000049!4.60e-09!112;CL:0000037!1.76e-08!172;CL:0000566!1.76e-08!172;CL:0002032!5.81e-08!165;CL:0000837!5.81e-08!165;CL:0000988!6.10e-08!182 | |ontology_enrichment_celltype=CL:0002057!7.43e-28!42;CL:0000860!3.08e-26!45;CL:0002009!2.86e-23!65;CL:0002194!5.56e-23!63;CL:0000576!5.56e-23!63;CL:0000040!5.56e-23!63;CL:0000559!5.56e-23!63;CL:0000557!6.66e-20!71;CL:0000839!6.80e-19!70;CL:0000766!2.21e-17!76;CL:0002087!1.57e-16!119;CL:0002031!7.68e-14!124;CL:0000738!6.14e-13!140;CL:0000763!4.60e-09!112;CL:0000049!4.60e-09!112;CL:0000037!1.76e-08!172;CL:0000566!1.76e-08!172;CL:0002032!5.81e-08!165;CL:0000837!5.81e-08!165;CL:0000988!6.10e-08!182 | ||
|ontology_enrichment_celltype_v019=CL:0000860;4.14e-27;33!CL:0002057;4.14e-27;33!CL:0000576;4.15e-23;48!CL:0000473;1.54e-22;39!CL:0000234;1.54e-22;39!CL:0000766;2.76e-13;69!CL:0002087;2.00e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,6.27e-37,48;CL:0000234,6.27e-37,48;CL:0000860,7.11e-37,42;CL:0002057,7.11e-37,42;CL:0002194,2.86e-30,59;CL:0000576,2.86e-30,59;CL:0000040,2.86e-30,59;CL:0000559,2.86e-30,59;CL:0002009,1.10e-29,61;CL:0000557,3.48e-25,67;CL:0000839,6.63e-25,66;CL:0000766,6.59e-23,72;CL:0002087,3.77e-20,115;CL:0002031,7.14e-17,120;CL:0000738,1.18e-15,136;CL:0000763,6.10e-12,108;CL:0000049,6.10e-12,108;CL:0000037,1.19e-10,168;CL:0000988,1.84e-10,177;CL:0002032,9.52e-10,161;CL:0000837,9.52e-10,161;CL:0002393,2.37e-08,9;CL:0002397,2.37e-08,9 | |||
|ontology_enrichment_development_v019=CL:0002057;2.12e-26;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!3.73e-22!112;UBERON:0002390!4.30e-21!102;UBERON:0003061!4.30e-21!102;UBERON:0002371!2.85e-17!80;UBERON:0007023!3.18e-15!115;UBERON:0002405!6.42e-15!115;UBERON:0001474!4.06e-14!86;UBERON:0004765!1.75e-13!101;UBERON:0001434!1.75e-13!101 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,1.05e-27,108;UBERON:0002390,2.89e-26,98;UBERON:0003061,2.89e-26,98;UBERON:0002405,6.38e-25,93;UBERON:0002371,1.42e-21,76;UBERON:0001474,1.50e-18,82;UBERON:0004765,2.32e-18,90;UBERON:0001434,9.30e-17,100;UBERON:0007023,3.37e-11,114;UBERON:0005423,5.15e-08,581;UBERON:0002050,7.64e-08,564;UBERON:0003081,7.81e-08,203;UBERON:0000922,1.64e-07,592;UBERON:0002204,1.73e-07,167;UBERON:0000923,5.65e-07,560;UBERON:0010316,5.65e-07,560;UBERON:0005291,5.65e-07,560;UBERON:0006598,5.65e-07,560;UBERON:0010317,5.65e-07,560;UBERON:0002532,5.65e-07,560 | |||
|phase1_expression=0,0,0,0,0,0.872338524100369,2.53299878168311,0,0,0,0,0,0,0,0,96.1424959426039,0,0.730310090387373,0,0.246242116153576,0,0,0.286235987131057,0,0.753255837568817,0.840547463227464,1.14940825229924,1.25937250101887,1.57345710739562,0.383829398097213,1.39334510984468,0.919421224478927,0.90361775633475,0.369754010166788,2.01414721508784,37.9591850741416,1.76160263600908,7.20194031091441,5.01361118675354,3.25516306073778,25.5263640633514,16.518576966968,10.8181738406358,2.4717700592526,1.51150377475524,8.24785808038575,14.4106002881524,4.11167888021826,12.3882548358041,16378.9032796847,14959.2729398864,29991.1493589302,192.368089851033,43.8929584837002,51.4620649058499,6.58848188399116,5.45812300115692,31.2365643378668,1440.1247136051,460.85408288127,933.4322036666,10687.5119773498,12264.022988866,18103.4700541257,644.844928232714,132.768142577727,327.604502971672,4184.2952711858,5930.30374827453,11089.2280329538,4088.26284128314,893.809822541819,2958.60686018483,28.7307189384241,27.0007460955605,42.7703636837087,9.32327638515909,13.9664510342601,8.19700492155109,16.8157518807337,18.1014176251172,14.9784606087,3.51992488922645,2.18455444504853,0.889509253863555,0,0,1.72425731986345,1.32208974556972,1.90810750907073,0,0,0,5.28685314316103,14.5732226375199,0,0.196709770113833,0,0,0.167186495390678,0,0,0,0.111410456885174,0,0,0.270803863765016,0.128091319725675,0,0,0,0.289803085735052,0,0,0,0,0,0,0,0,0,0,1.80690142893327,0.639933055772092,0,0.473554504088034,0,0,0,0,0,0,0,0,0,0,0,10.705967146658,2.07976597760949,0,0.263504357079378,3.47094550068939,1.09288586487763,0.741568885568859,0,0,0.398873881556595,0.476981248610684,3.43196946468077,0,0,0,0,0,0,0.275118041940067,0,0,1.06729878806013,0.66944122552934,0.805658634218294,0,0.24406205754817,0,0,0.267899184852239,0,0.112611480483322,0,0,0,0,0,0,0,0,0,0,0.709336764396714,0,0,0,0,0,0,0,0,0.234321431833797,0,0,0,0,0,0,0,0,0,41.5801000048719,9.64341024186372,0,0,0,0,0,0.438977620880838,0,7.66214100423644,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,25.8969543238818,70.6412452330262,9.17774705244812,0.121973706129595,0,0.232387885739037,1.34759371519982,0,0,1.56449532329816,0,0,0,0.721879481669586,4.96888560167344,3.37169380156203,2.6511213287183,6.61763836394364,3.4860711054785,1.89816495288877,4.58426447744559,3.53198637225623,2.69323009862473,0,0,0,0,1.26755034821831,12.7767538168091,4.72631925345123,0,1.96781501668982,0,0.768251997860379,0,0,10.7402596383894,0,0,0,4.05756417412769,0,10.9718500298416,12.0376233269919,11.0347408296067,0,0,1.96973604869918,0.234004265139238,0.297262324577456,22.4961201568265,41.9955320497149,45.5098062148061,0.626909658919938,0.581267877027924,0.383382679165211,0,0,0,0.144119953416961,0.25248486685276,0,0,0,0,0,0,0.285826432630578,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,2.41151501647669,0.871533458600294,0.799783929456456,128.921207479662,5.02257091432126,8.43335757932127,0,0,0,3.90909528002464,0,0,0,0.394061520403854,0,0.256686072559497,0,1.30139853857622,0,0.167516265334349,0.637938751653163,0,0,0,0.12269149171914,0,0,0,0,0,0,0.300946099727719,0,0,0,0,0,0,0,1.24060815673732,1.72571360654893,5.33637789017222,0,0,0,0,0,0,0,0,0,0,5.08891989548763,0.355123450626254,1.56041596426237,13.5006151587741,4.06736324609857,1.81289174387433,2.40607764363942,0.0920809889358963,0.229628896329213,0,2.09799063935079,0,0.0770153371044148,0,0,2.32213583564327,0,0.510281115829547,0.647747748306418,1.54227252690289,0,0,0.509752546090077,0,0,0,0,0,0,0,10.8193062230108,0,0,3.44559322797703,4.55042172225565,0,1.64340221096607,0.154048617114644,0,0,0.107420244868274,0.145016693914229,0.0852266274161009,0.445160178233687,9.0906703448538,0.192190067365106,0.638063562472921,0.2023155617111,0,0,0,1.54016790088044,0,0,0,0.429374660225974,1.116475108079,0,0,0,0,0,0,0.179872457583315,0.274537029736055,0.117812402345686,0.606547444719948,0,0,0,1158.12650272786,0,0.136499911407986,0.141405431953713,0,0,0.66343897524122,2.63070531152258,0,0,0,0.30982349809975,0,0,0,0,0,0.633322905892992,2.30506425071931,0,0,0.962221127255121,2.01090682660736,0,9.97924288233859,0.43050537267123,1.68471475667626,1.33029046061003,6.43225520579487,3.55213326462519,0,0.569647187174163,2.1440859791201,2.46817363851717,1.94541993357815,2.16012574895246,0.79312517629427,0.106824071127473,0,0.490080431962063,0.929015875628594,0.144269212976445,0.0711418433484141,0,0,2.10655907145603,0,0.324621940274555,0.280797178113459,0,0,0,2.70866844482565,0.321176150207399,0,3.83261613921294,1.03051603426729,0,0,0,0,0,0,0,0.33307196799782,0,0.18714054040822,4.24873719888493,0,2.89752799121444,0,0.23874448473769,0,0,0.994147647766298,1.54736358051564,2.56010021552684,0.16480387422676,0,3.18796781201712,24.8655523978033,0,0,5.29264663482599,0,0.0898683511473268,0,0,0.789147245095469,0,0,1.93866549219044,2.04089815956073,1.99613798001194,0,0,0,0.1137934482855,0,0,0,0,0,0,1.5677537021303,0,0.442317039724898,1.18219047581419,1.97446857438575,0,0,1.84680620409113,0.227884111694002,0,0,0,2.23300811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| ||
|short_description=p1@CXCL10 | |short_description=p1@CXCL10 | ||
}} | }} |
Latest revision as of 17:14, 18 September 2015
Short description: | p1@CXCL10 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CXCL10_5end |
Coexpression cluster: | C7_CD14_Eosinophils_Neutrophils_Smooth_Basophils_Macrophage_Mast |
Association with transcript: | 0bp_to_ENST00000306602, uc003hjl.3_5end |
EntrezGene: | CXCL10 |
HGNC: | 10637 |
UniProt: | P02778 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 6.27e-37 | 48 |
phagocyte | 6.27e-37 | 48 |
classical monocyte | 7.11e-37 | 42 |
CD14-positive, CD16-negative classical monocyte | 7.11e-37 | 42 |
monopoietic cell | 2.86e-30 | 59 |
monocyte | 2.86e-30 | 59 |
monoblast | 2.86e-30 | 59 |
promonocyte | 2.86e-30 | 59 |
macrophage dendritic cell progenitor | 1.10e-29 | 61 |
granulocyte monocyte progenitor cell | 3.48e-25 | 67 |
myeloid lineage restricted progenitor cell | 6.63e-25 | 66 |
myeloid leukocyte | 6.59e-23 | 72 |
nongranular leukocyte | 3.77e-20 | 115 |
hematopoietic lineage restricted progenitor cell | 7.14e-17 | 120 |
leukocyte | 1.18e-15 | 136 |
myeloid cell | 6.10e-12 | 108 |
common myeloid progenitor | 6.10e-12 | 108 |
hematopoietic stem cell | 1.19e-10 | 168 |
hematopoietic cell | 1.84e-10 | 177 |
hematopoietic oligopotent progenitor cell | 9.52e-10 | 161 |
hematopoietic multipotent progenitor cell | 9.52e-10 | 161 |
intermediate monocyte | 2.37e-08 | 9 |
CD14-positive, CD16-positive monocyte | 2.37e-08 | 9 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 1.05e-27 | 108 |
hematopoietic system | 2.89e-26 | 98 |
blood island | 2.89e-26 | 98 |
immune system | 6.38e-25 | 93 |
bone marrow | 1.42e-21 | 76 |
bone element | 1.50e-18 | 82 |
skeletal element | 2.32e-18 | 90 |
skeletal system | 9.30e-17 | 100 |
adult organism | 3.37e-11 | 114 |
developing anatomical structure | 5.15e-08 | 581 |
embryonic structure | 7.64e-08 | 564 |
lateral plate mesoderm | 7.81e-08 | 203 |
embryo | 1.64e-07 | 592 |
musculoskeletal system | 1.73e-07 | 167 |
germ layer | 5.65e-07 | 560 |
germ layer / neural crest | 5.65e-07 | 560 |
embryonic tissue | 5.65e-07 | 560 |
presumptive structure | 5.65e-07 | 560 |
germ layer / neural crest derived structure | 5.65e-07 | 560 |
epiblast (generic) | 5.65e-07 | 560 |