FFCP PHASE1:Hg19::chr3:49395753..49395769,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr3:49395753..49395769,- to FFCP PHASE1:Hg19::chr3:49395753..49395769,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4553 | |HGNC=4553 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000496791_5end | |||
|cluster_id=chr3:49395753..49395769,- | |||
|coexpression_cluster_id=C1437 | |||
|description=CAGE_peak_3_at_GPX1_5end | |||
|id=chr3:49395753..49395769,- | |||
|ontology_enrichment_celltype=CL:0002371!4.31e-25!591;CL:0000144!8.60e-23!625;CL:0000003!3.07e-18!722;CL:0000012!5.62e-17!682;CL:0000548!2.52e-16!679;CL:0000004!2.52e-16!679;CL:0000255!2.52e-16!679;CL:0000723!5.54e-10!436;CL:0000222!8.25e-10!119;CL:0000034!8.96e-10!444;CL:0000048!9.84e-10!430;CL:0000183!3.98e-08!59;CL:0002078!5.61e-08!44;CL:0002009!5.86e-08!65;CL:0000115!1.15e-07!35;CL:0002194!1.34e-07!63;CL:0000576!1.34e-07!63;CL:0000040!1.34e-07!63;CL:0000559!1.34e-07!63;CL:0000557!1.66e-07!71;CL:0000220!2.46e-07!246;CL:0002321!4.73e-07!248;CL:0000393!6.66e-07!60;CL:0000211!6.66e-07!60;CL:0000839!8.20e-07!70 | |||
|ontology_enrichment_celltype_v019=CL:0000473;2.24e-07;39!CL:0000234;2.24e-07;39!CL:0000860;3.58e-07;33!CL:0002057;3.58e-07;33!CL:0000115;5.43e-07;36 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,1.90e-10,121;CL:0000723,3.24e-10,433;CL:0000034,5.30e-10,441;CL:0000048,5.86e-10,427;CL:0002009,2.08e-08,61;CL:0002078,2.26e-08,45;CL:0000115,4.43e-08,36;CL:0002194,4.87e-08,59;CL:0000576,4.87e-08,59;CL:0000040,4.87e-08,59;CL:0000559,4.87e-08,59;CL:0000557,6.84e-08,67;CL:0002321,1.71e-07,250;CL:0000393,3.16e-07,61;CL:0000211,3.16e-07,61;CL:0000473,3.58e-07,48;CL:0000234,3.58e-07,48;CL:0000839,3.67e-07,66 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003081!3.42e-15!216;UBERON:0002204!1.19e-11!167;UBERON:0004535!1.07e-08!110;UBERON:0002193!1.21e-08!112;UBERON:0002371!2.04e-08!80;UBERON:0004765!1.09e-07!101;UBERON:0001434!1.09e-07!101;UBERON:0002390!1.09e-07!102;UBERON:0003061!1.09e-07!102;UBERON:0001009!1.75e-07!113;UBERON:0000353!4.05e-07!17;UBERON:0002049!4.84e-07!79;UBERON:0007798!4.84e-07!79;UBERON:0000055!7.96e-07!69 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003081,8.52e-14,203;UBERON:0002204,3.27e-13,167;UBERON:0000926,8.97e-11,315;UBERON:0004120,8.97e-11,315;UBERON:0006603,8.97e-11,315;UBERON:0001434,6.06e-09,100;UBERON:0002193,6.33e-09,108;UBERON:0002371,8.37e-09,76;UBERON:0004535,1.45e-08,109;UBERON:0004765,1.78e-08,90;UBERON:0007503,5.78e-08,78;UBERON:0002390,5.84e-08,98;UBERON:0003061,5.84e-08,98;UBERON:0002405,1.59e-07,93;UBERON:0001009,2.13e-07,112;UBERON:0002049,7.01e-07,78;UBERON:0007798,7.01e-07,78;UBERON:0001474,8.20e-07,82 | |||
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| ||
|short_description=p3@GPX1 | |||
}} | }} |
Latest revision as of 16:37, 18 September 2015
Short description: | p3@GPX1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_GPX1_5end |
Coexpression cluster: | C1437_Mesenchymal_Osteoblast_Renal_Pericytes_Placental_Fibroblast_Nucleus |
Association with transcript: | 0bp_to_ENST00000496791_5end |
EntrezGene: | NA |
HGNC: | 4553 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 1.90e-10 | 121 |
somatic stem cell | 3.24e-10 | 433 |
stem cell | 5.30e-10 | 441 |
multi fate stem cell | 5.86e-10 | 427 |
macrophage dendritic cell progenitor | 2.08e-08 | 61 |
meso-epithelial cell | 2.26e-08 | 45 |
endothelial cell | 4.43e-08 | 36 |
monopoietic cell | 4.87e-08 | 59 |
monocyte | 4.87e-08 | 59 |
monoblast | 4.87e-08 | 59 |
promonocyte | 4.87e-08 | 59 |
granulocyte monocyte progenitor cell | 6.84e-08 | 67 |
embryonic cell | 1.71e-07 | 250 |
electrically responsive cell | 3.16e-07 | 61 |
electrically active cell | 3.16e-07 | 61 |
defensive cell | 3.58e-07 | 48 |
phagocyte | 3.58e-07 | 48 |
myeloid lineage restricted progenitor cell | 3.67e-07 | 66 |
Ontology term | p-value | n |
---|---|---|
lateral plate mesoderm | 8.52e-14 | 203 |
musculoskeletal system | 3.27e-13 | 167 |
mesoderm | 8.97e-11 | 315 |
mesoderm-derived structure | 8.97e-11 | 315 |
presumptive mesoderm | 8.97e-11 | 315 |
skeletal system | 6.06e-09 | 100 |
hemolymphoid system | 6.33e-09 | 108 |
bone marrow | 8.37e-09 | 76 |
cardiovascular system | 1.45e-08 | 109 |
skeletal element | 1.78e-08 | 90 |
epithelial vesicle | 5.78e-08 | 78 |
hematopoietic system | 5.84e-08 | 98 |
blood island | 5.84e-08 | 98 |
immune system | 1.59e-07 | 93 |
circulatory system | 2.13e-07 | 112 |
vasculature | 7.01e-07 | 78 |
vascular system | 7.01e-07 | 78 |
bone element | 8.20e-07 | 82 |