FFCP PHASE1:Hg19::chr3:49055991..49056026,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55152 | |EntrezGene=55152 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25536 | |HGNC=25536 | ||
|TSSclassifier=strong | |||
|UniProt=Q5D0E6,C9JA38 | |UniProt=Q5D0E6,C9JA38 | ||
|association_with_transcript=0bp_to_ENST00000341949,ENST00000395462,ENST00000420952,ENST00000441576,ENST00000460505,ENST00000484831,ENST00000498794,NM_001009996,uc003cvk.1,uc003cvl.1,uc011bca.1_5end | |association_with_transcript=0bp_to_ENST00000341949,ENST00000395462,ENST00000420952,ENST00000441576,ENST00000460505,ENST00000484831,ENST00000498794,NM_001009996,uc003cvk.1,uc003cvl.1,uc011bca.1_5end | ||
|cluster_id=chr3:49055991..49056026,- | |||
|coexpression_cluster_id=C895 | |||
|description=CAGE_peak_1_at_DALRD3_5end | |description=CAGE_peak_1_at_DALRD3_5end | ||
|id=chr3:49055991..49056026,- | |id=chr3:49055991..49056026,- | ||
|ontology_enrichment_celltype=CL:0000055!2.34e-16!180;CL:0002321!4.90e-10!248;CL:0000220!8.52e-10!246;CL:0000183!1.44e-09!59;CL:0000393!3.66e-09!60;CL:0000211!3.66e-09!60;CL:1000449!1.31e-07!16;CL:0000187!1.32e-07!54;CL:0000680!2.25e-07!57;CL:0000056!2.25e-07!57;CL:0000355!2.25e-07!57;CL:1000497!3.22e-07!18;CL:0002518!3.22e-07!18;CL:1000507!6.78e-07!12;CL:1000494!6.78e-07!12 | |ontology_enrichment_celltype=CL:0000055!2.34e-16!180;CL:0002321!4.90e-10!248;CL:0000220!8.52e-10!246;CL:0000183!1.44e-09!59;CL:0000393!3.66e-09!60;CL:0000211!3.66e-09!60;CL:1000449!1.31e-07!16;CL:0000187!1.32e-07!54;CL:0000680!2.25e-07!57;CL:0000056!2.25e-07!57;CL:0000355!2.25e-07!57;CL:1000497!3.22e-07!18;CL:0002518!3.22e-07!18;CL:1000507!6.78e-07!12;CL:1000494!6.78e-07!12 | ||
|ontology_enrichment_celltype_v019=CL:1000449;2.06e-07;15!CL:1000497;5.69e-07;17!CL:0002518;5.69e-07;17!CL:1000507;9.99e-07;10!CL:1000494;9.99e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,2.57e-10,250;CL:0000393,2.61e-09,61;CL:0000211,2.61e-09,61;CL:0000187,9.47e-08,55;CL:1000449,1.55e-07,15;CL:0000680,1.62e-07,58;CL:0000056,1.62e-07,58;CL:0000355,1.62e-07,58;CL:1000497,4.03e-07,17;CL:0002518,4.03e-07,17;CL:0000222,6.12e-07,121;CL:1000507,8.44e-07,10;CL:1000494,8.44e-07,10 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000486!2.40e-08!82;UBERON:0004290!4.08e-08!70;UBERON:0004876!4.24e-08!20;UBERON:0000080!4.43e-08!18;UBERON:0002120!4.43e-08!18;UBERON:0004875!4.43e-08!18;UBERON:0005721!4.43e-08!18;UBERON:0005754!4.43e-08!18;UBERON:0007297!4.43e-08!18;UBERON:0000914!5.91e-08!83;UBERON:0002329!5.91e-08!83;UBERON:0003077!5.91e-08!83;UBERON:0003059!5.91e-08!83;UBERON:0007282!5.91e-08!83;UBERON:0009618!5.91e-08!83;UBERON:0007285!5.91e-08!83;UBERON:0006555!8.49e-08!17;UBERON:0005103!8.49e-08!17;UBERON:0000083!8.49e-08!17;UBERON:0009201!8.49e-08!17;UBERON:0004819!8.49e-08!17;UBERON:0006553!8.49e-08!17;UBERON:0003074!8.49e-08!17;UBERON:0003060!8.49e-08!17;UBERON:0004211!1.31e-07!16;UBERON:0001285!1.31e-07!16;UBERON:0007684!1.31e-07!16;UBERON:0003220!1.31e-07!16;UBERON:0004208!1.31e-07!16;UBERON:0005256!1.70e-07!143;UBERON:0009773!6.78e-07!12;UBERON:0001231!6.78e-07!12;UBERON:0004810!6.78e-07!12;UBERON:0002113!9.12e-07!27;UBERON:0003918!9.12e-07!27;UBERON:0005095!9.12e-07!27;UBERON:0007687!9.12e-07!27;UBERON:0002100!9.34e-07!216 | |ontology_enrichment_uberon=UBERON:0000486!2.40e-08!82;UBERON:0004290!4.08e-08!70;UBERON:0004876!4.24e-08!20;UBERON:0000080!4.43e-08!18;UBERON:0002120!4.43e-08!18;UBERON:0004875!4.43e-08!18;UBERON:0005721!4.43e-08!18;UBERON:0005754!4.43e-08!18;UBERON:0007297!4.43e-08!18;UBERON:0000914!5.91e-08!83;UBERON:0002329!5.91e-08!83;UBERON:0003077!5.91e-08!83;UBERON:0003059!5.91e-08!83;UBERON:0007282!5.91e-08!83;UBERON:0009618!5.91e-08!83;UBERON:0007285!5.91e-08!83;UBERON:0006555!8.49e-08!17;UBERON:0005103!8.49e-08!17;UBERON:0000083!8.49e-08!17;UBERON:0009201!8.49e-08!17;UBERON:0004819!8.49e-08!17;UBERON:0006553!8.49e-08!17;UBERON:0003074!8.49e-08!17;UBERON:0003060!8.49e-08!17;UBERON:0004211!1.31e-07!16;UBERON:0001285!1.31e-07!16;UBERON:0007684!1.31e-07!16;UBERON:0003220!1.31e-07!16;UBERON:0004208!1.31e-07!16;UBERON:0005256!1.70e-07!143;UBERON:0009773!6.78e-07!12;UBERON:0001231!6.78e-07!12;UBERON:0004810!6.78e-07!12;UBERON:0002113!9.12e-07!27;UBERON:0003918!9.12e-07!27;UBERON:0005095!9.12e-07!27;UBERON:0007687!9.12e-07!27;UBERON:0002100!9.34e-07!216 | ||
|ontology_enrichment_uberon_v019=UBERON:0006555;2.06e-07;15!UBERON:0004819;2.06e-07;15!UBERON:0001285;2.06e-07;15!UBERON:0007684;2.06e-07;15!UBERON:0000353;4.22e-07;15!UBERON:0004211;9.99e-07;10!UBERON:0009773;9.99e-07;10!UBERON:0001231;9.99e-07;10!UBERON:0004810;9.99e-07;10 | |||
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| ||
|short_description=p1@DALRD3 | |short_description=p1@DALRD3 | ||
}} | }} |
Latest revision as of 15:30, 18 September 2015
Short description: | p1@DALRD3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_DALRD3_5end |
Coexpression cluster: | C895_Mesenchymal_Renal_Alveolar_Fibroblast_Pericytes_Trabecular_Osteoblast |
Association with transcript: | 0bp_to_ENST00000341949, ENST00000395462, ENST00000420952, ENST00000441576, ENST00000460505, ENST00000484831, ENST00000498794, NM_001009996, uc003cvk.1, uc003cvl.1, uc011bca.1_5end |
EntrezGene: | DALRD3 |
HGNC: | 25536 |
UniProt: | Q5D0E6C9JA38 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 2.57e-10 | 250 |
electrically responsive cell | 2.61e-09 | 61 |
electrically active cell | 2.61e-09 | 61 |
muscle cell | 9.47e-08 | 55 |
epithelial cell of nephron | 1.55e-07 | 15 |
muscle precursor cell | 1.62e-07 | 58 |
myoblast | 1.62e-07 | 58 |
multi-potent skeletal muscle stem cell | 1.62e-07 | 58 |
kidney cell | 4.03e-07 | 17 |
kidney epithelial cell | 4.03e-07 | 17 |
mesodermal cell | 6.12e-07 | 121 |
kidney tubule cell | 8.44e-07 | 10 |
nephron tubule epithelial cell | 8.44e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
epithelial vesicle | 4.18e-10 | 78 |
multilaminar epithelium | 1.73e-08 | 83 |
dense mesenchyme tissue | 2.41e-08 | 73 |
somite | 2.94e-08 | 71 |
presomitic mesoderm | 2.94e-08 | 71 |
presumptive segmental plate | 2.94e-08 | 71 |
dermomyotome | 2.94e-08 | 71 |
trunk paraxial mesoderm | 2.94e-08 | 71 |
mesenchyme | 3.88e-08 | 160 |
entire embryonic mesenchyme | 3.88e-08 | 160 |
paraxial mesoderm | 4.34e-08 | 72 |
presumptive paraxial mesoderm | 4.34e-08 | 72 |
excretory tube | 1.01e-07 | 16 |
kidney epithelium | 1.01e-07 | 16 |
nephron epithelium | 1.55e-07 | 15 |
renal tubule | 1.55e-07 | 15 |
nephron tubule | 1.55e-07 | 15 |
nephron | 1.55e-07 | 15 |
uriniferous tubule | 1.55e-07 | 15 |
nephrogenic mesenchyme | 1.55e-07 | 15 |
parenchyma | 3.76e-07 | 15 |
trunk | 7.51e-07 | 199 |
nephron tubule epithelium | 8.44e-07 | 10 |