FFCP PHASE1:Hg19::chr1:171454639..171454657,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr1:171454639..171454657,+
|short_description=p2@PRRC2C
|description=CAGE_peak_2_at_PRRC2C_5end
|association_with_transcript=0bp_to_ENST00000392078,ENST0000042...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=23215 | |EntrezGene=23215 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24903 | |HGNC=24903 | ||
|TSSclassifier=strong | |||
|UniProt=E9PF21 | |UniProt=E9PF21 | ||
|association_with_transcript=0bp_to_ENST00000392078,ENST00000426496,ENST00000451306_5end | |||
|cluster_id=chr1:171454639..171454657,+ | |||
|coexpression_cluster_id=C3904 | |||
|description=CAGE_peak_2_at_PRRC2C_5end | |||
|id=chr1:171454639..171454657,+ | |||
|ontology_enrichment_celltype=CL:0000037!1.49e-19!172;CL:0000566!1.49e-19!172;CL:0002032!1.76e-19!165;CL:0000837!1.76e-19!165;CL:0000738!1.10e-18!140;CL:0000988!2.64e-17!182;CL:0002087!1.24e-14!119;CL:0002031!3.00e-14!124;CL:0000763!7.25e-13!112;CL:0000049!7.25e-13!112;CL:0000766!1.54e-11!76;CL:0000557!1.59e-09!71;CL:0000860!3.56e-09!45;CL:0002057!6.26e-09!42;CL:0000839!1.74e-08!70;CL:0002194!1.26e-07!63;CL:0000576!1.26e-07!63;CL:0000040!1.26e-07!63;CL:0000559!1.26e-07!63;CL:0002009!1.49e-07!65;CL:0000542!9.07e-07!53;CL:0000051!9.07e-07!53 | |||
|ontology_enrichment_celltype_v019=CL:0000860;4.03e-10;33!CL:0002057;4.03e-10;33!CL:0000473;4.99e-07;39!CL:0000234;4.99e-07;39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,2.96e-19,168;CL:0002032,3.42e-19,161;CL:0000837,3.42e-19,161;CL:0000738,1.99e-18,136;CL:0000988,1.81e-17,177;CL:0002087,2.15e-14,115;CL:0002031,5.33e-14,120;CL:0000763,1.26e-12,108;CL:0000049,1.26e-12,108;CL:0000766,2.31e-11,72;CL:0000557,2.49e-09,67;CL:0000860,6.26e-09,42;CL:0002057,6.26e-09,42;CL:0000839,2.79e-08,66;CL:0002194,2.00e-07,59;CL:0000576,2.00e-07,59;CL:0000040,2.00e-07,59;CL:0000559,2.00e-07,59;CL:0002009,2.40e-07,61;CL:0000473,3.35e-07,48;CL:0000234,3.35e-07,48;CL:0000542,9.07e-07,53;CL:0000051,9.07e-07,53 | |||
|ontology_enrichment_development_v019=CL:0002057;4.54e-07;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.27e-15!115;UBERON:0001049!4.60e-12!57;UBERON:0005068!4.60e-12!57;UBERON:0006241!4.60e-12!57;UBERON:0007135!4.60e-12!57;UBERON:0002390!7.23e-11!102;UBERON:0003061!7.23e-11!102;UBERON:0002780!1.02e-10!41;UBERON:0001890!1.02e-10!41;UBERON:0006240!1.02e-10!41;UBERON:0003080!2.85e-10!42;UBERON:0001017!6.52e-10!82;UBERON:0000955!1.28e-09!69;UBERON:0006238!1.28e-09!69;UBERON:0000073!4.40e-09!94;UBERON:0001016!4.40e-09!94;UBERON:0002616!4.45e-09!59;UBERON:0002193!6.47e-09!112;UBERON:0005743!1.57e-08!86;UBERON:0002020!2.00e-08!34;UBERON:0003528!2.00e-08!34;UBERON:0001893!4.83e-08!34;UBERON:0002791!8.35e-08!33;UBERON:0001869!1.15e-07!32;UBERON:0002371!5.33e-07!80;UBERON:0002619!8.42e-07!22;UBERON:0001474!9.74e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;8.47e-08;41!UBERON:0001890;8.47e-08;41!UBERON:0003528;4.19e-07;34!UBERON:0002020;4.19e-07;34!UBERON:0000073;5.10e-07;53!UBERON:0002616;5.10e-07;53!UBERON:0002791;5.67e-07;32!UBERON:0001893;6.38e-07;34!UBERON:0001869;7.06e-07;32!UBERON:0002619;8.78e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.87e-15,114;UBERON:0001049,1.80e-12,56;UBERON:0005068,1.80e-12,56;UBERON:0006241,1.80e-12,56;UBERON:0007135,1.80e-12,56;UBERON:0000073,2.05e-11,53;UBERON:0002616,2.05e-11,53;UBERON:0002780,1.02e-10,41;UBERON:0001890,1.02e-10,41;UBERON:0003080,1.02e-10,41;UBERON:0006240,1.02e-10,41;UBERON:0001016,1.06e-10,89;UBERON:0002390,1.24e-10,98;UBERON:0003061,1.24e-10,98;UBERON:0001017,3.51e-10,81;UBERON:0000955,6.47e-10,68;UBERON:0006238,6.47e-10,68;UBERON:0002193,1.14e-08,108;UBERON:0003528,2.00e-08,34;UBERON:0002020,2.00e-08,34;UBERON:0001893,4.83e-08,34;UBERON:0002791,1.02e-07,32;UBERON:0001869,1.15e-07,32;UBERON:0002619,8.42e-07,22;UBERON:0002371,9.03e-07,76 | |||
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| ||
|short_description=p2@PRRC2C | |||
}} | }} |
Latest revision as of 15:04, 18 September 2015
Short description: | p2@PRRC2C |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_PRRC2C_5end |
Coexpression cluster: | C3904_CD14_Mast_CD19_Neutrophils_CD4_Eosinophils_CD8 |
Association with transcript: | 0bp_to_ENST00000392078, ENST00000426496, ENST00000451306_5end |
EntrezGene: | PRRC2C |
HGNC: | 24903 |
UniProt: | E9PF21 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 2.96e-19 | 168 |
hematopoietic oligopotent progenitor cell | 3.42e-19 | 161 |
hematopoietic multipotent progenitor cell | 3.42e-19 | 161 |
leukocyte | 1.99e-18 | 136 |
hematopoietic cell | 1.81e-17 | 177 |
nongranular leukocyte | 2.15e-14 | 115 |
hematopoietic lineage restricted progenitor cell | 5.33e-14 | 120 |
myeloid cell | 1.26e-12 | 108 |
common myeloid progenitor | 1.26e-12 | 108 |
myeloid leukocyte | 2.31e-11 | 72 |
granulocyte monocyte progenitor cell | 2.49e-09 | 67 |
classical monocyte | 6.26e-09 | 42 |
CD14-positive, CD16-negative classical monocyte | 6.26e-09 | 42 |
myeloid lineage restricted progenitor cell | 2.79e-08 | 66 |
monopoietic cell | 2.00e-07 | 59 |
monocyte | 2.00e-07 | 59 |
monoblast | 2.00e-07 | 59 |
promonocyte | 2.00e-07 | 59 |
macrophage dendritic cell progenitor | 2.40e-07 | 61 |
defensive cell | 3.35e-07 | 48 |
phagocyte | 3.35e-07 | 48 |
lymphocyte | 9.07e-07 | 53 |
common lymphoid progenitor | 9.07e-07 | 53 |
Ontology term | p-value | n |
---|---|---|
adult organism | 2.87e-15 | 114 |
neural tube | 1.80e-12 | 56 |
neural rod | 1.80e-12 | 56 |
future spinal cord | 1.80e-12 | 56 |
neural keel | 1.80e-12 | 56 |
regional part of nervous system | 2.05e-11 | 53 |
regional part of brain | 2.05e-11 | 53 |
regional part of forebrain | 1.02e-10 | 41 |
forebrain | 1.02e-10 | 41 |
anterior neural tube | 1.02e-10 | 41 |
future forebrain | 1.02e-10 | 41 |
nervous system | 1.06e-10 | 89 |
hematopoietic system | 1.24e-10 | 98 |
blood island | 1.24e-10 | 98 |
central nervous system | 3.51e-10 | 81 |
brain | 6.47e-10 | 68 |
future brain | 6.47e-10 | 68 |
hemolymphoid system | 1.14e-08 | 108 |
brain grey matter | 2.00e-08 | 34 |
gray matter | 2.00e-08 | 34 |
telencephalon | 4.83e-08 | 34 |
regional part of telencephalon | 1.02e-07 | 32 |
cerebral hemisphere | 1.15e-07 | 32 |
regional part of cerebral cortex | 8.42e-07 | 22 |
bone marrow | 9.03e-07 | 76 |