FFCP PHASE1:Hg19::chr14:103523689..103523716,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr14:103523689..103523716,- to FFCP PHASE1:Hg19::chr14:103523689..103523716,-: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=9578 | |EntrezGene=9578 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1738 | |HGNC=1738 | ||
|TSSclassifier=strong | |||
|UniProt=Q86XZ8,Q9Y5S2 | |UniProt=Q86XZ8,Q9Y5S2 | ||
|association_with_transcript=25bp_to_NM_006035,uc001ymi.1_5end | |||
|cluster_id=chr14:103523689..103523716,- | |||
|description=CAGE_peak_3_at_CDC42BPB_5end | |||
|id=chr14:103523689..103523716,- | |||
|ontology_enrichment_celltype=CL:0000066!1.03e-12!254;CL:0000222!1.77e-09!119;CL:0000220!5.69e-09!246;CL:0002321!1.53e-08!248;CL:0002139!6.43e-08!24;CL:0000057!3.70e-07!75;CL:0000071!3.88e-07!18;CL:0002546!3.88e-07!18;CL:0002334!5.16e-07!12;CL:0000136!8.43e-07!15 | |||
|ontology_enrichment_celltype_v019=CL:0002139;6.66e-08;24!CL:0002334;1.80e-07;12!CL:0000071;3.12e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.53e-10,253;CL:0000222,9.20e-09,121;CL:0002139,4.68e-08,24;CL:0002334,2.26e-07,12;CL:0000071,3.34e-07,18;CL:0002546,3.34e-07,18;CL:0000136,3.81e-07,15 | |||
|ontology_enrichment_development_v019=CL:0002546;3.12e-07;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000477!1.37e-18!286;UBERON:0004111!1.66e-16!241;UBERON:0003914!4.78e-15!118;UBERON:0000468!2.70e-13!659;UBERON:0000055!3.20e-13!69;UBERON:0000467!7.30e-13!625;UBERON:0000480!1.49e-12!626;UBERON:0003104!2.77e-12!238;UBERON:0009142!2.77e-12!238;UBERON:0001981!3.02e-12!60;UBERON:0007500!3.02e-12!60;UBERON:0004537!3.02e-12!60;UBERON:0006965!3.02e-12!60;UBERON:0002049!3.06e-12!79;UBERON:0007798!3.06e-12!79;UBERON:0000025!5.68e-12!194;UBERON:0000481!9.64e-12!347;UBERON:0004872!1.83e-11!84;UBERON:0002100!2.59e-11!216;UBERON:0000475!3.09e-11!365;UBERON:0001637!8.45e-11!42;UBERON:0003509!8.45e-11!42;UBERON:0004572!8.45e-11!42;UBERON:0000483!7.01e-10!309;UBERON:0000119!7.86e-10!312;UBERON:0004119!2.71e-09!169;UBERON:0000925!2.71e-09!169;UBERON:0006595!2.71e-09!169;UBERON:0001007!4.72e-09!155;UBERON:0001555!4.72e-09!155;UBERON:0007026!4.72e-09!155;UBERON:0004573!9.01e-09!33;UBERON:0004571!9.01e-09!33;UBERON:0004921!1.36e-08!129;UBERON:0004185!1.36e-08!129;UBERON:0009569!3.69e-08!113;UBERON:0000466!5.60e-08!126;UBERON:0000490!6.77e-08!138;UBERON:0000926!1.32e-07!448;UBERON:0004120!1.32e-07!448;UBERON:0006603!1.32e-07!448;UBERON:0000923!2.27e-07!604;UBERON:0005291!2.27e-07!604;UBERON:0006598!2.27e-07!604;UBERON:0002532!2.27e-07!604;UBERON:0002050!2.38e-07!605;UBERON:0005423!2.38e-07!605;UBERON:0001986!3.88e-07!18;UBERON:0004638!3.88e-07!18;UBERON:0004852!3.88e-07!18;UBERON:0005256!4.97e-07!143;UBERON:0000922!7.45e-07!612;UBERON:0000077!9.45e-07!130 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;3.19e-08;33!UBERON:0004571;3.19e-08;33!UBERON:0001637;3.43e-08;42!UBERON:0003509;3.43e-08;42!UBERON:0004572;3.43e-08;42!UBERON:0004638;3.12e-07;18!UBERON:0001986;3.12e-07;18!UBERON:0004852;3.12e-07;18!UBERON:0000055;5.73e-07;65!UBERON:0007500;8.38e-07;56!UBERON:0001981;8.38e-07;56!UBERON:0004537;8.38e-07;56 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004111,4.77e-15,240;UBERON:0003914,5.90e-15,117;UBERON:0000055,1.15e-13,68;UBERON:0007500,1.91e-12,59;UBERON:0001981,1.91e-12,59;UBERON:0004537,1.91e-12,59;UBERON:0006965,1.91e-12,59;UBERON:0002049,7.10e-12,78;UBERON:0007798,7.10e-12,78;UBERON:0004872,2.66e-11,83;UBERON:0001637,5.94e-11,42;UBERON:0003509,5.94e-11,42;UBERON:0004572,5.94e-11,42;UBERON:0000025,1.10e-10,192;UBERON:0004573,8.51e-09,33;UBERON:0004571,8.51e-09,33;UBERON:0002100,7.84e-08,199;UBERON:0004921,2.28e-07,118;UBERON:0000483,2.55e-07,306;UBERON:0001007,2.60e-07,145;UBERON:0001555,2.60e-07,145;UBERON:0007026,2.60e-07,145;UBERON:0004119,3.20e-07,160;UBERON:0000925,3.20e-07,160;UBERON:0006595,3.20e-07,160;UBERON:0004638,3.34e-07,18;UBERON:0001986,3.34e-07,18;UBERON:0004852,3.34e-07,18;UBERON:0000119,3.51e-07,309;UBERON:0001009,8.33e-07,112 | |||
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| ||
|short_description=p3@CDC42BPB | |||
}} | }} |
Latest revision as of 14:28, 18 September 2015
Short description: | p3@CDC42BPB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_CDC42BPB_5end |
Coexpression cluster: | NA |
Association with transcript: | 25bp_to_NM_006035, uc001ymi.1_5end |
EntrezGene: | CDC42BPB |
HGNC: | 1738 |
UniProt: | Q86XZ8Q9Y5S2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.53e-10 | 253 |
mesodermal cell | 9.20e-09 | 121 |
endothelial cell of vascular tree | 4.68e-08 | 24 |
preadipocyte | 2.26e-07 | 12 |
blood vessel endothelial cell | 3.34e-07 | 18 |
embryonic blood vessel endothelial progenitor cell | 3.34e-07 | 18 |
fat cell | 3.81e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
anatomical conduit | 4.77e-15 | 240 |
epithelial tube | 5.90e-15 | 117 |
vessel | 1.15e-13 | 68 |
epithelial tube open at both ends | 1.91e-12 | 59 |
blood vessel | 1.91e-12 | 59 |
blood vasculature | 1.91e-12 | 59 |
vascular cord | 1.91e-12 | 59 |
vasculature | 7.10e-12 | 78 |
vascular system | 7.10e-12 | 78 |
splanchnic layer of lateral plate mesoderm | 2.66e-11 | 83 |
artery | 5.94e-11 | 42 |
arterial blood vessel | 5.94e-11 | 42 |
arterial system | 5.94e-11 | 42 |
tube | 1.10e-10 | 192 |
systemic artery | 8.51e-09 | 33 |
systemic arterial system | 8.51e-09 | 33 |
trunk | 7.84e-08 | 199 |
subdivision of digestive tract | 2.28e-07 | 118 |
epithelium | 2.55e-07 | 306 |
digestive system | 2.60e-07 | 145 |
digestive tract | 2.60e-07 | 145 |
primitive gut | 2.60e-07 | 145 |
endoderm-derived structure | 3.20e-07 | 160 |
endoderm | 3.20e-07 | 160 |
presumptive endoderm | 3.20e-07 | 160 |
blood vessel endothelium | 3.34e-07 | 18 |
endothelium | 3.34e-07 | 18 |
cardiovascular system endothelium | 3.34e-07 | 18 |
cell layer | 3.51e-07 | 309 |
circulatory system | 8.33e-07 | 112 |