FFCP PHASE1:Hg19::chr3:48520879..48520892,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=51246 | |EntrezGene=51246 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30376 | |HGNC=30376 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=75bp_to_ENST00000486344,uc011bbl.1_5end | |association_with_transcript=75bp_to_ENST00000486344,uc011bbl.1_5end | ||
|cluster_id=chr3:48520879..48520892,- | |||
|coexpression_cluster_id=C239 | |coexpression_cluster_id=C239 | ||
|description=CAGE_peak_18_at_SHISA5_5end | |description=CAGE_peak_18_at_SHISA5_5end | ||
|id=chr3:48520879..48520892,- | |id=chr3:48520879..48520892,- | ||
|ontology_enrichment_celltype=CL:0000542!3.05e-46!53;CL:0000051!3.05e-46!53;CL:0000838!3.06e-44!52;CL:0000791!5.93e-44!18;CL:0000789!5.93e-44!18;CL:0002420!5.93e-44!18;CL:0002419!5.93e-44!18;CL:0000790!5.93e-44!18;CL:0000084!9.27e-38!25;CL:0000827!9.27e-38!25;CL:0000625!8.30e-26!11;CL:0002087!7.67e-24!119;CL:0000738!2.21e-21!140;CL:0002031!1.25e-19!124;CL:0000624!1.85e-17!6;CL:0000037!1.58e-15!172;CL:0000566!1.58e-15!172;CL:0002032!1.84e-14!165;CL:0000837!1.84e-14!165;CL:0000988!3.93e-14!182;CL:0000898!9.26e-10!3;CL:0000623!2.76e-09!3;CL:0000825!2.76e-09!3;CL:0000945!2.94e-07!24;CL:0000826!2.94e-07!24;CL:0000815!4.89e-07!2;CL:0000792!4.89e-07!2;CL:0002677!4.89e-07!2 | |ontology_enrichment_celltype=CL:0000542!3.05e-46!53;CL:0000051!3.05e-46!53;CL:0000838!3.06e-44!52;CL:0000791!5.93e-44!18;CL:0000789!5.93e-44!18;CL:0002420!5.93e-44!18;CL:0002419!5.93e-44!18;CL:0000790!5.93e-44!18;CL:0000084!9.27e-38!25;CL:0000827!9.27e-38!25;CL:0000625!8.30e-26!11;CL:0002087!7.67e-24!119;CL:0000738!2.21e-21!140;CL:0002031!1.25e-19!124;CL:0000624!1.85e-17!6;CL:0000037!1.58e-15!172;CL:0000566!1.58e-15!172;CL:0002032!1.84e-14!165;CL:0000837!1.84e-14!165;CL:0000988!3.93e-14!182;CL:0000898!9.26e-10!3;CL:0000623!2.76e-09!3;CL:0000825!2.76e-09!3;CL:0000945!2.94e-07!24;CL:0000826!2.94e-07!24;CL:0000815!4.89e-07!2;CL:0000792!4.89e-07!2;CL:0002677!4.89e-07!2 | ||
|ontology_enrichment_celltype_v019=CL:0000791;1.11e-35;18!CL:0000789;1.11e-35;18!CL:0002419;1.11e-35;18!CL:0000625;1.31e-26;11!CL:0000084;2.34e-25;25!CL:0000624;6.64e-13;6!CL:0000898;5.57e-12;3!CL:0000895;1.83e-09;1!CL:0000542;1.07e-07;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.58e-35,18;CL:0000789,1.58e-35,18;CL:0002420,1.58e-35,18;CL:0002419,1.58e-35,18;CL:0000790,1.58e-35,18;CL:0000625,1.57e-26,11;CL:0000084,3.01e-25,25;CL:0000827,3.01e-25,25;CL:0000838,3.64e-14,52;CL:0000542,7.19e-14,53;CL:0000051,7.19e-14,53;CL:0000624,7.99e-13,6;CL:0000898,6.23e-12,3;CL:0000810,1.91e-09,1;CL:0000895,1.91e-09,1;CL:0002436,1.91e-09,1;CL:0002427,1.91e-09,1;CL:0002428,1.91e-09,1;CL:0002429,1.91e-09,1;CL:0002433,1.91e-09,1;CL:0002431,1.91e-09,1;CL:0002432,1.91e-09,1 | |||
|ontology_enrichment_development_v019=CL:0000790;1.11e-35;18!CL:0002427;1.83e-09;1!CL:0000051;1.07e-07;53 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
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| ||
|short_description=p18@SHISA5 | |short_description=p18@SHISA5 | ||
}} | }} |
Latest revision as of 14:20, 18 September 2015
Short description: | p18@SHISA5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_18_at_SHISA5_5end |
Coexpression cluster: | C239_CD4_lymphangiectasia_CD8_NK_mycosis_Renal_hairy |
Association with transcript: | 75bp_to_ENST00000486344, uc011bbl.1_5end |
EntrezGene: | SHISA5 |
HGNC: | 30376 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 1.58e-35 | 18 |
alpha-beta T cell | 1.58e-35 | 18 |
immature T cell | 1.58e-35 | 18 |
mature T cell | 1.58e-35 | 18 |
immature alpha-beta T cell | 1.58e-35 | 18 |
CD8-positive, alpha-beta T cell | 1.57e-26 | 11 |
T cell | 3.01e-25 | 25 |
pro-T cell | 3.01e-25 | 25 |
lymphoid lineage restricted progenitor cell | 3.64e-14 | 52 |
lymphocyte | 7.19e-14 | 53 |
common lymphoid progenitor | 7.19e-14 | 53 |
CD4-positive, alpha-beta T cell | 7.99e-13 | 6 |
naive T cell | 6.23e-12 | 3 |
CD4-positive, alpha-beta thymocyte | 1.91e-09 | 1 |
naive thymus-derived CD4-positive, alpha-beta T cell | 1.91e-09 | 1 |
mature CD4 single-positive thymocyte | 1.91e-09 | 1 |
resting double-positive thymocyte | 1.91e-09 | 1 |
double-positive blast | 1.91e-09 | 1 |
CD69-positive double-positive thymocyte | 1.91e-09 | 1 |
CD69-positive, CD4-positive single-positive thymocyte | 1.91e-09 | 1 |
CD4-positive, CD8-intermediate double-positive thymocyte | 1.91e-09 | 1 |
CD24-positive, CD4 single-positive thymocyte | 1.91e-09 | 1 |