FFCP PHASE1:Hg19::chr21:43823983..43824052,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=53347 | |EntrezGene=53347 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12462 | |HGNC=12462 | ||
|TSSclassifier=strong | |||
|UniProt=P57075,G5E9E4,C9JXN7 | |UniProt=P57075,G5E9E4,C9JXN7 | ||
|association_with_transcript=0bp_to_ENST00000291535,ENST00000319294,ENST00000398367,ENST00000450356,ENST00000473381,uc002zbe.2,uc002zbf.2,uc010gpc.2,uc010gpd.2,uc010gpe.2_5end | |association_with_transcript=0bp_to_ENST00000291535,ENST00000319294,ENST00000398367,ENST00000450356,ENST00000473381,uc002zbe.2,uc002zbf.2,uc010gpc.2,uc010gpd.2,uc010gpe.2_5end | ||
|cluster_id=chr21:43823983..43824052,+ | |||
|coexpression_cluster_id=C18 | |coexpression_cluster_id=C18 | ||
|description=CAGE_peak_1_at_UBASH3A_5end | |description=CAGE_peak_1_at_UBASH3A_5end | ||
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|ontology_enrichment_celltype=CL:0000037!1.21e-28!172;CL:0000566!1.21e-28!172;CL:0000988!2.52e-25!182;CL:0002032!3.09e-25!165;CL:0000837!3.09e-25!165;CL:0000738!7.72e-23!140;CL:0000084!9.19e-20!25;CL:0000827!9.19e-20!25;CL:0000791!1.04e-17!18;CL:0000789!1.04e-17!18;CL:0002420!1.04e-17!18;CL:0002419!1.04e-17!18;CL:0000790!1.04e-17!18;CL:0002031!8.71e-17!124;CL:0000763!8.94e-17!112;CL:0000049!8.94e-17!112;CL:0002087!1.79e-16!119;CL:0000625!6.43e-13!11;CL:0000766!3.04e-10!76;CL:0002057!4.53e-09!42;CL:0000839!6.73e-09!70;CL:0000838!1.72e-08!52;CL:0000542!3.59e-08!53;CL:0000051!3.59e-08!53;CL:0000860!5.87e-08!45;CL:0000624!7.27e-08!6;CL:0000557!7.39e-08!71;CL:0002009!1.82e-07!65;CL:0002194!2.25e-07!63;CL:0000576!2.25e-07!63;CL:0000040!2.25e-07!63;CL:0000559!2.25e-07!63 | |ontology_enrichment_celltype=CL:0000037!1.21e-28!172;CL:0000566!1.21e-28!172;CL:0000988!2.52e-25!182;CL:0002032!3.09e-25!165;CL:0000837!3.09e-25!165;CL:0000738!7.72e-23!140;CL:0000084!9.19e-20!25;CL:0000827!9.19e-20!25;CL:0000791!1.04e-17!18;CL:0000789!1.04e-17!18;CL:0002420!1.04e-17!18;CL:0002419!1.04e-17!18;CL:0000790!1.04e-17!18;CL:0002031!8.71e-17!124;CL:0000763!8.94e-17!112;CL:0000049!8.94e-17!112;CL:0002087!1.79e-16!119;CL:0000625!6.43e-13!11;CL:0000766!3.04e-10!76;CL:0002057!4.53e-09!42;CL:0000839!6.73e-09!70;CL:0000838!1.72e-08!52;CL:0000542!3.59e-08!53;CL:0000051!3.59e-08!53;CL:0000860!5.87e-08!45;CL:0000624!7.27e-08!6;CL:0000557!7.39e-08!71;CL:0002009!1.82e-07!65;CL:0002194!2.25e-07!63;CL:0000576!2.25e-07!63;CL:0000040!2.25e-07!63;CL:0000559!2.25e-07!63 | ||
|ontology_enrichment_celltype_v019=CL:0000084;9.41e-29;25!CL:0000791;2.86e-25;18!CL:0000789;2.86e-25;18!CL:0002419;2.86e-25;18!CL:0000625;5.03e-18;11!CL:0000624;1.06e-10;6!CL:0000542;1.28e-07;53 | |ontology_enrichment_celltype_v019=CL:0000084;9.41e-29;25!CL:0000791;2.86e-25;18!CL:0000789;2.86e-25;18!CL:0002419;2.86e-25;18!CL:0000625;5.03e-18;11!CL:0000624;1.06e-10;6!CL:0000542;1.28e-07;53 | ||
|ontology_enrichment_celltype_v019_2=CL:0000084,9.09e-29,25;CL:0000827,9.09e-29,25;CL:0000791,2.77e-25,18;CL:0000789,2.77e-25,18;CL:0002420,2.77e-25,18;CL:0002419,2.77e-25,18;CL:0000790,2.77e-25,18;CL:0000037,1.56e-21,168;CL:0000988,1.78e-19,177;CL:0002032,2.33e-18,161;CL:0000837,2.33e-18,161;CL:0000625,4.93e-18,11;CL:0000738,3.98e-17,136;CL:0000838,1.05e-13,52;CL:0000542,2.67e-13,53;CL:0000051,2.67e-13,53;CL:0002087,6.05e-12,115;CL:0002031,2.24e-11,120;CL:0000624,1.04e-10,6;CL:0000763,3.11e-07,108;CL:0000049,3.11e-07,108 | |||
|ontology_enrichment_development_v019=CL:0000790;2.86e-25;18!CL:0000051;1.28e-07;53 | |ontology_enrichment_development_v019=CL:0000790;2.86e-25;18!CL:0000051;1.28e-07;53 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!4.45e-29!115;UBERON:0002390!2.30e-13!102;UBERON:0003061!2.30e-13!102;UBERON:0002193!2.84e-12!112;UBERON:0000178!2.42e-09!15;UBERON:0000179!2.42e-09!15;UBERON:0000463!2.42e-09!15 | |ontology_enrichment_uberon=UBERON:0007023!4.45e-29!115;UBERON:0002390!2.30e-13!102;UBERON:0003061!2.30e-13!102;UBERON:0002193!2.84e-12!112;UBERON:0000178!2.42e-09!15;UBERON:0000179!2.42e-09!15;UBERON:0000463!2.42e-09!15 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.60e-13;15!UBERON:0000179;1.60e-13;15!UBERON:0000463;1.60e-13;15!UBERON:0002390;2.11e-08;32 | |ontology_enrichment_uberon_v019=UBERON:0000178;1.60e-13;15!UBERON:0000179;1.60e-13;15!UBERON:0000463;1.60e-13;15!UBERON:0002390;2.11e-08;32 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,1.64e-13,15;UBERON:0000179,1.64e-13,15;UBERON:0000463,1.64e-13,15;UBERON:0007023,3.47e-10,114;UBERON:0002390,2.87e-07,98;UBERON:0003061,2.87e-07,98;UBERON:0002193,4.04e-07,108 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.90046415273356,12.2825407391108,2.94150634300544,0,0,0,0,0,0,9.97191735357379,6.01633342410425,10.4165217943609,2.01523926815932,11.3362783106643,3.34848237924443,0.436194716338694,1.88937971844405,0.242584061187816,0.697287110717054,0.411167888021826,0.619412741790207,0.863077176966451,0.768482119587302,0.709446689665756,1.37898272294647,3.22742341791913,0,0.752969358170419,0.272906150057846,0.449446968890169,0.306083892370903,1.92557416245656,0,0,0.598390972864896,0.426224750532694,0.870627715885752,1.13477044938228,0,0.251248665256743,1.0429658368404,0.434377689410233,4.84319602106695,1.84138817993782,0.632924774881769,0,0,0,0,0,0,0,0,0,0,0,0,0,0.800791974072025,0,0,0,0,0,0,0,3.92355994087075,4.74091352595139,69.2418390800692,55.8075283103814,76.6893591268169,79.4135853105721,92.2360014573061,111.260234347662,101.309898772114,98.9324857140341,57.1535460501184,70.4477784775915,66.0761427586638,49.3151580943849,55.535341408068,129.083755113886,109.15825702541,115.051825036816,118.77753709281,143.401883856086,126.487983804022,106.17085410762,70.5125708227535,78.003430124557,93.6172860472161,73.9071761231904,67.0615957472111,66.5316431113862,79.503662873064,88.4387483077031,71.2105141348371,75.5319434020414,42.6986558398944,40.5229553881712,41.9881107380106,56.6263419181744,0,0,0,0,0,0,0,0,0,0,0.175669571386252,1.63723844372141,0,0,0.97364218096405,0.522389211897802,0.930705723632056,0.476981248610684,1.14398982156026,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,0,0,0,0,0,0,0.709336764396714,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.18157981336281,53.8584981285874,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.47798971368783,5.37095447480679,0,0,0.25248486685276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,28.9635217496833,26.3065641328611,21.6899731312775,0,0,0,0,0,1.49801404789436,0,4.14415513436035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,38.0453168066113,40.5542697539,36.7142798843849,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.19259876645935,2.61435451024901,0,0,0,0.824328093181778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.6196469961995,0,0,0,0,0,0,0,0,0,0,0,0,1.03558180854457,0,0,0,0,30.4468565539302,28.2915766642679,34.7484784176239,39.0700111750774,40.313502762447,24.6419858253233,27.0015718619057,41.2425091673021,0,0,0,0,0,35.3574961441618,31.8852545457645,0,0.191505370132367,0.211673582723883,0,0.280797178113459,0.228234679033192,0,0,0.338583555603207,0,0,0,0,0,0,0,0,22.5509000855146,17.2322358526797,4.05683517713975,3.66379164797602,263.645699514279,0,0.293016358543788,0,0,0,0,0,0,0,0.140669416410513,0,0,0,1.19548792950642,31.4963663705508,0,0,0,0,0,0,0,3.35387579165574,28.7379710816328,0,0,0.0927680981618513,0,0,0,1.44999915086959,0,0,0,0,0,0,0,0.120596438625408,0,0.442317039724898,0,0.438770794307945,0,0,1.76985594558733,0,0,0,0,0.31900115973192,0.0915975934018623,0.533034776018635,60.2940459354845,0,31.4140078791296,1.80476528493745,1.9606253431774,2.18168063068596,11.3852239634511,11.9202434235284,0,0,0,0,3.98104772431402,4.0690479671536,3.66618086960175,0,0,0,0.337005664903385,2.40773294189637,0,0,0,0,0,12.0990716048664,0.30607276163049,1.32691817219825,0,0,0,0,0,0,0,0,0,0,0,1.22308667769421,0,0,0,0,1.74580229679155,0,0,0,0,0.0633107959558787,0,0,5.33632486848381,0,0,0,0,0,0,0,0,0,0,0,0,0.273810757783986,0,0,9.46394475405532,0.837847203816763,1.14580212005842,0,0,0,0,0.201550417460179,0,0,0,0,0,0,0,0,0.408610218334727,0,0,0,0.674921674654501,0,0.0607495566580247,0,0.788057072991982,0.209818352539992,0,0,0,2.85878130549347,0.662091970365432,0,0,0,0,0,0.164185041498678,0,0,0.439656701034247,0,0.129282956361551,0.52893040697076,0,0,5.44615804095243,1.72924735609633,11.5986935497215,32.7469574395888,0,0,0,0,0,0,0,0,0,0,0,0.573409195690071,0.665574309221114,0.434674820589684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,1.36402216187572,2.5244319659539,0.163565394255844,0,0,0,19.3987773979282,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128458450192919,0,0.159633859057151,0.41023272848151,0,0.0691572524642179,0,1.42769420259154,0,0,0,0,0,0,0,1.0529445968896,0,0,0,0,0,0.202612753855184,0,0,0,0,0.548257766857182,3.47347824872506,0,0,0,0.336283722218824,0,0,0.532214220975833,0,0,0.271878931907327,0.0657727735628491,0,0.556157009460346,1.56986185701028,0,0,0.913158720509496,0,0,1.78691360441641,0,0,0,0,0,0,0,4.73250094702305,0,0,0.423387050190929,0,0,0,0,0,0,0,0.410651227424988,0,0,0,0,0,0,0,0,5.0163202770164,1.96703604453562,0,0.980593287015622,0,0.392616934229891,0.297046400327086,0,0,7.80066519232785,8.50844121251219,0,0,0,0,2.92134555298607,8.71585638468627,0.716697915757256,0,0.203974470572744,0,13.225671012885,0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| ||
|short_description=p1@UBASH3A | |short_description=p1@UBASH3A | ||
}} | }} |
Latest revision as of 14:20, 18 September 2015
Short description: | p1@UBASH3A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_UBASH3A_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | 0bp_to_ENST00000291535, ENST00000319294, ENST00000398367, ENST00000450356, ENST00000473381, uc002zbe.2, uc002zbf.2, uc010gpc.2, uc010gpd.2, uc010gpe.2_5end |
EntrezGene: | UBASH3A |
HGNC: | 12462 |
UniProt: | P57075G5E9E4C9JXN7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
T cell | 9.09e-29 | 25 |
pro-T cell | 9.09e-29 | 25 |
mature alpha-beta T cell | 2.77e-25 | 18 |
alpha-beta T cell | 2.77e-25 | 18 |
immature T cell | 2.77e-25 | 18 |
mature T cell | 2.77e-25 | 18 |
immature alpha-beta T cell | 2.77e-25 | 18 |
hematopoietic stem cell | 1.56e-21 | 168 |
hematopoietic cell | 1.78e-19 | 177 |
hematopoietic oligopotent progenitor cell | 2.33e-18 | 161 |
hematopoietic multipotent progenitor cell | 2.33e-18 | 161 |
CD8-positive, alpha-beta T cell | 4.93e-18 | 11 |
leukocyte | 3.98e-17 | 136 |
lymphoid lineage restricted progenitor cell | 1.05e-13 | 52 |
lymphocyte | 2.67e-13 | 53 |
common lymphoid progenitor | 2.67e-13 | 53 |
nongranular leukocyte | 6.05e-12 | 115 |
hematopoietic lineage restricted progenitor cell | 2.24e-11 | 120 |
CD4-positive, alpha-beta T cell | 1.04e-10 | 6 |
myeloid cell | 3.11e-07 | 108 |
common myeloid progenitor | 3.11e-07 | 108 |
Ontology term | p-value | n |
---|---|---|
blood | 1.64e-13 | 15 |
haemolymphatic fluid | 1.64e-13 | 15 |
organism substance | 1.64e-13 | 15 |
adult organism | 3.47e-10 | 114 |
hematopoietic system | 2.87e-07 | 98 |
blood island | 2.87e-07 | 98 |
hemolymphoid system | 4.04e-07 | 108 |