FFCP PHASE2:Hg19::chr3:48520793..48520806,-: Difference between revisions
From FANTOM5_SSTAR
Jump to: navigation, search
(Created page with "{{FFCP |DHSsupport=supported |DPIdataset=robust |EntrezGene=entrezgene:51246 |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding |HGNC=HGNC:30376 |TSScla...") |
No edit summary |
||
Line 2: | Line 2: | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=51246 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC= | |HGNC=30376 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt= |
Latest revision as of 14:20, 18 September 2015
Short description: | p20@SHISA5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_20_at_SHISA5_5end |
Coexpression cluster: | C239_CD4_lymphangiectasia_CD8_NK_mycosis_Renal_hairy |
Association with transcript: | 161bp_to_ENST00000486344, uc011bbl.1_5end |
EntrezGene: | SHISA5 |
HGNC: | 30376 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
Sample | p20@SHISA5 |
---|
0.0
1.0
2.0
3.0
4.0
5.0
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
naive T cell | 3.62e-14 | 3 |
T cell | 7.04e-14 | 25 |
pro-T cell | 7.04e-14 | 25 |
mature alpha-beta T cell | 1.03e-13 | 18 |
alpha-beta T cell | 1.03e-13 | 18 |
immature T cell | 1.03e-13 | 18 |
mature T cell | 1.03e-13 | 18 |
immature alpha-beta T cell | 1.03e-13 | 18 |
CD4-positive, alpha-beta thymocyte | 5.43e-11 | 1 |
naive thymus-derived CD4-positive, alpha-beta T cell | 5.43e-11 | 1 |
Showing 1 to 10 of 22 entries
Ontology term | p-value | n |
---|---|---|
non-Hodgkin lymphoma | 3.63e-11 | 1 |
cutaneous T cell lymphoma | 3.63e-11 | 1 |
mycosis fungoides | 3.63e-11 | 1 |
Showing 1 to 3 of 3 entries