FFCP PHASE1:Hg19::chr14:103243813..103243954,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr14:103243813..103243954,+ to FFCP PHASE1:Hg19::chr14:103243813..103243954,+: NSchange) |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=7187 | |EntrezGene=7187 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12033 | |HGNC=12033 | ||
|TSSclassifier=strong | |||
|UniProt=A6NHG8,Q13114 | |UniProt=A6NHG8,Q13114 | ||
|association_with_transcript=0bp_to_ENST00000347662,ENST00000392745,ENST00000539721,ENST00000560371,ENST00000560463,NM_001199427,NM_003300,NM_145725,NM_145726,uc001ymc.1,uc001ymd.1,uc001yme.1,uc010txy.1_5end | |||
|cluster_id=chr14:103243813..103243954,+ | |||
|coexpression_cluster_id=C290 | |||
|description=CAGE_peak_1_at_TRAF3_5end | |||
|id=chr14:103243813..103243954,+ | |||
|ontology_enrichment_celltype=CL:0000738!1.13e-50!140;CL:0002087!3.59e-42!119;CL:0000037!2.22e-39!172;CL:0000566!2.22e-39!172;CL:0002031!3.51e-39!124;CL:0000988!7.90e-38!182;CL:0002032!1.24e-37!165;CL:0000837!1.24e-37!165;CL:0000766!8.19e-29!76;CL:0000557!1.02e-25!71;CL:0002057!2.56e-25!42;CL:0002009!2.91e-25!65;CL:0002194!4.22e-24!63;CL:0000576!4.22e-24!63;CL:0000040!4.22e-24!63;CL:0000559!4.22e-24!63;CL:0000860!6.66e-22!45;CL:0000839!8.69e-22!70;CL:0000763!9.00e-21!112;CL:0000049!9.00e-21!112;CL:0000542!8.13e-16!53;CL:0000051!8.13e-16!53;CL:0000838!1.72e-15!52;CL:0000945!5.11e-10!24;CL:0000826!5.11e-10!24;CL:0000134!6.80e-10!358;CL:0002320!3.08e-08!365;CL:0000048!6.68e-08!430;CL:0000723!7.51e-07!436;CL:0000791!7.91e-07!18;CL:0000789!7.91e-07!18;CL:0002420!7.91e-07!18;CL:0002419!7.91e-07!18;CL:0000790!7.91e-07!18 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.17e-19;33!CL:0002057;1.17e-19;33!CL:0000473;7.34e-19;39!CL:0000234;7.34e-19;39!CL:0000576;1.96e-15;48!CL:0000766;9.29e-14;69!CL:0002087;5.37e-13;104!CL:0000738;4.91e-11;136!CL:0000945;4.63e-10;24!CL:0000542;5.10e-09;53!CL:0000988;2.54e-07;177!CL:0000791;7.04e-07;18!CL:0000789;7.04e-07;18!CL:0002419;7.04e-07;18!CL:0000763;7.90e-07;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,6.00e-53,136;CL:0002087,1.94e-44,115;CL:0002031,2.97e-41,120;CL:0000037,5.79e-41,168;CL:0000988,1.45e-39,177;CL:0002032,3.24e-39,161;CL:0000837,3.24e-39,161;CL:0000766,2.96e-31,72;CL:0000473,4.19e-28,48;CL:0000234,4.19e-28,48;CL:0000557,4.47e-28,67;CL:0002009,9.06e-28,61;CL:0002194,1.41e-26,59;CL:0000576,1.41e-26,59;CL:0000040,1.41e-26,59;CL:0000559,1.41e-26,59;CL:0000860,2.56e-25,42;CL:0002057,2.56e-25,42;CL:0000839,7.07e-24,66;CL:0000763,3.83e-22,108;CL:0000049,3.83e-22,108;CL:0000542,7.98e-16,53;CL:0000051,7.98e-16,53;CL:0000838,1.69e-15,52;CL:0000134,1.55e-10,354;CL:0000945,5.11e-10,24;CL:0000826,5.11e-10,24;CL:0002320,8.26e-09,361;CL:0000048,2.87e-08,427;CL:0000723,3.45e-07,433;CL:0000791,7.91e-07,18;CL:0000789,7.91e-07,18;CL:0002420,7.91e-07,18;CL:0002419,7.91e-07,18;CL:0000790,7.91e-07,18 | |||
|ontology_enrichment_development_v019=CL:0002057;1.15e-18;42!CL:0000051;5.10e-09;53!CL:0000049;4.48e-07;108!CL:0000790;7.04e-07;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!4.81e-29!112;UBERON:0002390!2.68e-28!102;UBERON:0003061!2.68e-28!102;UBERON:0002371!2.69e-22!80;UBERON:0001474!4.16e-20!86;UBERON:0002405!2.71e-18!115;UBERON:0004765!5.05e-16!101;UBERON:0001434!5.05e-16!101;UBERON:0003081!4.80e-15!216;UBERON:0002204!8.59e-09!167;UBERON:0002384!1.04e-08!375 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,8.12e-31,108;UBERON:0002390,3.56e-30,98;UBERON:0003061,3.56e-30,98;UBERON:0002405,1.90e-26,93;UBERON:0002371,3.40e-24,76;UBERON:0001474,9.40e-22,82;UBERON:0004765,3.07e-18,90;UBERON:0003081,6.17e-16,203;UBERON:0001434,1.86e-15,100;UBERON:0002384,2.70e-09,371;UBERON:0002204,3.47e-08,167 | |||
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| ||
|short_description=p1@TRAF3 | |||
}} | }} |
Latest revision as of 14:10, 18 September 2015
Short description: | p1@TRAF3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TRAF3_5end |
Coexpression cluster: | C290_Eosinophils_CD14_Basophils_Mast_CD4_CD8_immature |
Association with transcript: | 0bp_to_ENST00000347662, ENST00000392745, ENST00000539721, ENST00000560371, ENST00000560463, NM_001199427, NM_003300, NM_145725, NM_145726, uc001ymc.1, uc001ymd.1, uc001yme.1, uc010txy.1_5end |
EntrezGene: | TRAF3 |
HGNC: | 12033 |
UniProt: | A6NHG8Q13114 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 8.12e-31 | 108 |
hematopoietic system | 3.56e-30 | 98 |
blood island | 3.56e-30 | 98 |
immune system | 1.90e-26 | 93 |
bone marrow | 3.40e-24 | 76 |
bone element | 9.40e-22 | 82 |
skeletal element | 3.07e-18 | 90 |
lateral plate mesoderm | 6.17e-16 | 203 |
skeletal system | 1.86e-15 | 100 |
connective tissue | 2.70e-09 | 371 |
musculoskeletal system | 3.47e-08 | 167 |