FFCP PHASE1:Hg19::chr14:103243813..103243954,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7187 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12033 | |||
|TSSclassifier=strong | |||
|UniProt=A6NHG8,Q13114 | |||
|association_with_transcript=0bp_to_ENST00000347662,ENST00000392745,ENST00000539721,ENST00000560371,ENST00000560463,NM_001199427,NM_003300,NM_145725,NM_145726,uc001ymc.1,uc001ymd.1,uc001yme.1,uc010txy.1_5end | |||
|cluster_id=chr14:103243813..103243954,+ | |||
|coexpression_cluster_id=C290 | |||
|description=CAGE_peak_1_at_TRAF3_5end | |||
|id=chr14:103243813..103243954,+ | |||
|ontology_enrichment_celltype=CL:0000738!1.13e-50!140;CL:0002087!3.59e-42!119;CL:0000037!2.22e-39!172;CL:0000566!2.22e-39!172;CL:0002031!3.51e-39!124;CL:0000988!7.90e-38!182;CL:0002032!1.24e-37!165;CL:0000837!1.24e-37!165;CL:0000766!8.19e-29!76;CL:0000557!1.02e-25!71;CL:0002057!2.56e-25!42;CL:0002009!2.91e-25!65;CL:0002194!4.22e-24!63;CL:0000576!4.22e-24!63;CL:0000040!4.22e-24!63;CL:0000559!4.22e-24!63;CL:0000860!6.66e-22!45;CL:0000839!8.69e-22!70;CL:0000763!9.00e-21!112;CL:0000049!9.00e-21!112;CL:0000542!8.13e-16!53;CL:0000051!8.13e-16!53;CL:0000838!1.72e-15!52;CL:0000945!5.11e-10!24;CL:0000826!5.11e-10!24;CL:0000134!6.80e-10!358;CL:0002320!3.08e-08!365;CL:0000048!6.68e-08!430;CL:0000723!7.51e-07!436;CL:0000791!7.91e-07!18;CL:0000789!7.91e-07!18;CL:0002420!7.91e-07!18;CL:0002419!7.91e-07!18;CL:0000790!7.91e-07!18 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.17e-19;33!CL:0002057;1.17e-19;33!CL:0000473;7.34e-19;39!CL:0000234;7.34e-19;39!CL:0000576;1.96e-15;48!CL:0000766;9.29e-14;69!CL:0002087;5.37e-13;104!CL:0000738;4.91e-11;136!CL:0000945;4.63e-10;24!CL:0000542;5.10e-09;53!CL:0000988;2.54e-07;177!CL:0000791;7.04e-07;18!CL:0000789;7.04e-07;18!CL:0002419;7.04e-07;18!CL:0000763;7.90e-07;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,6.00e-53,136;CL:0002087,1.94e-44,115;CL:0002031,2.97e-41,120;CL:0000037,5.79e-41,168;CL:0000988,1.45e-39,177;CL:0002032,3.24e-39,161;CL:0000837,3.24e-39,161;CL:0000766,2.96e-31,72;CL:0000473,4.19e-28,48;CL:0000234,4.19e-28,48;CL:0000557,4.47e-28,67;CL:0002009,9.06e-28,61;CL:0002194,1.41e-26,59;CL:0000576,1.41e-26,59;CL:0000040,1.41e-26,59;CL:0000559,1.41e-26,59;CL:0000860,2.56e-25,42;CL:0002057,2.56e-25,42;CL:0000839,7.07e-24,66;CL:0000763,3.83e-22,108;CL:0000049,3.83e-22,108;CL:0000542,7.98e-16,53;CL:0000051,7.98e-16,53;CL:0000838,1.69e-15,52;CL:0000134,1.55e-10,354;CL:0000945,5.11e-10,24;CL:0000826,5.11e-10,24;CL:0002320,8.26e-09,361;CL:0000048,2.87e-08,427;CL:0000723,3.45e-07,433;CL:0000791,7.91e-07,18;CL:0000789,7.91e-07,18;CL:0002420,7.91e-07,18;CL:0002419,7.91e-07,18;CL:0000790,7.91e-07,18 | |||
|ontology_enrichment_development_v019=CL:0002057;1.15e-18;42!CL:0000051;5.10e-09;53!CL:0000049;4.48e-07;108!CL:0000790;7.04e-07;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!4.81e-29!112;UBERON:0002390!2.68e-28!102;UBERON:0003061!2.68e-28!102;UBERON:0002371!2.69e-22!80;UBERON:0001474!4.16e-20!86;UBERON:0002405!2.71e-18!115;UBERON:0004765!5.05e-16!101;UBERON:0001434!5.05e-16!101;UBERON:0003081!4.80e-15!216;UBERON:0002204!8.59e-09!167;UBERON:0002384!1.04e-08!375 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,8.12e-31,108;UBERON:0002390,3.56e-30,98;UBERON:0003061,3.56e-30,98;UBERON:0002405,1.90e-26,93;UBERON:0002371,3.40e-24,76;UBERON:0001474,9.40e-22,82;UBERON:0004765,3.07e-18,90;UBERON:0003081,6.17e-16,203;UBERON:0001434,1.86e-15,100;UBERON:0002384,2.70e-09,371;UBERON:0002204,3.47e-08,167 | |||
|phase1_expression=2.72517568905835,2.14100523890983,3.94672331468719,9.00659685178174,1.78784437770915,3.48935409640147,10.1319951267324,1.89515962028049,4.44015567939725,6.38908234903923,6.97801167972428,5.02415155899396,4.22027165165526,1.23766352960047,1.65698687863958,8.74022690387308,14.4646686725754,10.2243412654232,8.78279037822912,2.46242116153576,6.32402142857184,7.52291331547411,2.57612388417951,4.24310717725941,5.39833350257652,38.2831162797236,37.5199693786252,32.7436850264906,32.649234978459,27.2518872649021,35.4528922393814,6.43594857135249,9.0361775633475,9.98335827450327,5.42270404062111,15.7807848061038,7.04641054403633,61.4934903470384,61.1660564783932,62.4991307661653,17.689322464954,20.7291946252147,18.2878653020272,35.0409755458751,45.3451132426571,40.2689541571775,68.3341368502713,84.2894170444743,56.3665595029088,54.0861697565643,63.7840159257461,41.3843902305024,69.9833731895336,84.5584935494812,63.6504486993406,55.719732504611,73.9575666656762,37.9782688712193,84.78523818674,66.4323086047514,54.9829928187175,38.5926021218458,49.865914405408,38.7864522984752,94.898421031547,115.179200612301,75.9843143774602,42.4610244283896,58.4060868630626,41.4830693386773,61.7507492686036,89.4914655449782,59.1784664514454,13.3090830376523,23.5990772961198,30.1908449532061,17.9725809834392,19.8233498550788,22.9837588976825,12.8255734683562,12.1339173091445,19.5450644528158,28.1593991138116,26.2146533405823,25.7957683620431,27.737464466823,25.6253431703048,25.2891073579973,25.7807500386096,27.6675588815256,42.6909726832086,82.8004437013024,97.0973999438081,29.0776922873857,50.4457706683382,6.58460211937693,38.1616954020836,40.0870978004148,32.690638340922,13.3749196312542,13.6887351986108,15.1503297835115,11.6896037044747,20.3881136099868,18.2655662634399,21.9318555637785,19.2270743273161,22.2878896322675,27.5725816826942,18.9103590294228,22.6607014584396,17.3881851441032,12.159498179289,18.4603171381902,22.9978152370949,11.7841716405469,20.6939066545037,20.6176467289578,17.7113784413652,9.2383970153988,8.46408490013344,15.207232711174,13.5517607169995,10.7508753369711,17.4903017173284,7.81364931745256,9.03240796613151,37.9020677262497,36.1044264307735,40.8404818949493,4.87613732627923,3.35350429851818,4.34732710268003,7.22878304769133,7.01873074890245,5.64901423947212,4.7717156823066,15.0856809793817,5.10488012685966,4.43458794925128,5.18225235589444,8.31717129410475,3.27865759463288,3.33705998505986,10.3855165969499,10.9701734498538,13.5617119729242,36.0120842701066,33.1757048252474,42.7176126529,6.16163462836786,4.30117297553062,5.9013885273291,9.04492707078415,7.97048928798821,7.42818713238182,6.06085402956751,6.46041897923322,7.47109151642091,7.02913286805807,12.0848795132744,12.1643536914962,11.470916704764,6.61793544622564,8.91156142669936,3.66128885964727,5.38870494302808,6.75668882899933,6.13266549863533,3.79706263827252,6.77846452542507,65.8902087180316,85.3116581126316,3.92484646928281,10.4364109856017,5.57174251324151,7.41491412554025,4.30254931123221,5.32002573297536,10.0921968025615,16.0123493594557,6.41335625884616,5.60179863719579,11.4504071259235,6.21155231831143,5.44886739521753,5.76175924479999,5.38939293217732,3.43376084513353,5.13424639390004,5.38015249986484,5.16711794032565,6.31304483035713,5.75848307479219,3.26646674007829,3.31652656741774,2.78979609174567,11.8800285728205,7.91254173691382,3.64064544775211,10.7792721272436,2.18836948140286,2.37725187756732,3.60183350129438,2.19488810440419,7.04921930337745,11.4180924769014,4.8775838758809,3.22901344239952,2.98980344345994,4.23863802319124,3.00091096084402,5.46178404963726,4.12224864073007,4.09457083929498,3.71307930930786,3.80004320128675,2.77677151668526,3.95814564161887,5.33431987502079,2.4850671476163,3.12331504505685,4.91725717700414,9.85630351132814,12.8190676677692,11.7589884109492,2.43947412259191,2.38553582978673,2.09149097165133,3.10983165046111,1.51392510525377,0.72995471815166,6.25798129319264,7.07565032012174,11.0507937081984,4.17931135228781,2.88751792667834,4.02243120135469,5.39471008249925,2.89213235860178,4.74264082749294,4.57546832594053,4.27087114399974,4.58426447744559,2.35465758150415,3.46272441251751,8.85786545549578,9.81692416624121,3.7041661019826,8.82052268313252,7.60530208930985,7.86261773342101,1.77236972004421,1.32438929824395,3.19769940212095,2.40194934417936,5.1582634142054,2.24803506515239,3.41798506199545,3.79612625149971,3.25808305310325,3.11980435583874,7.21656710126366,6.14431146367907,5.75302601755526,12.1267816119302,10.1856812766854,10.4639783729029,0,2.57545848628462,25.8527856391767,20.5923753322529,28.5371831594358,11.2480600784132,12.0947132303179,8.50650583454319,4.29880908973672,2.61570544662566,4.98397482914775,9.36060152002293,3.25779205848936,16.1715930121802,10.2325166926043,17.8001831131196,3.36538839748496,1.90994212779139,1.17217447210047,8.55362230113526,4.01027221542962,4.80548892550268,6.00235508524214,6.839996145067,4.79556075716608,2.7868548611961,8.66120495577111,0,5.071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| |||
|short_description=p1@TRAF3 | |||
}} |
Latest revision as of 14:10, 18 September 2015
Short description: | p1@TRAF3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TRAF3_5end |
Coexpression cluster: | C290_Eosinophils_CD14_Basophils_Mast_CD4_CD8_immature |
Association with transcript: | 0bp_to_ENST00000347662, ENST00000392745, ENST00000539721, ENST00000560371, ENST00000560463, NM_001199427, NM_003300, NM_145725, NM_145726, uc001ymc.1, uc001ymd.1, uc001yme.1, uc010txy.1_5end |
EntrezGene: | TRAF3 |
HGNC: | 12033 |
UniProt: | A6NHG8Q13114 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 8.12e-31 | 108 |
hematopoietic system | 3.56e-30 | 98 |
blood island | 3.56e-30 | 98 |
immune system | 1.90e-26 | 93 |
bone marrow | 3.40e-24 | 76 |
bone element | 9.40e-22 | 82 |
skeletal element | 3.07e-18 | 90 |
lateral plate mesoderm | 6.17e-16 | 203 |
skeletal system | 1.86e-15 | 100 |
connective tissue | 2.70e-09 | 371 |
musculoskeletal system | 3.47e-08 | 167 |