FFCP PHASE1:Hg19::chr1:170632108..170632114,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5396 | |EntrezGene=5396 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9142 | |HGNC=9142 | ||
|TSSclassifier=strong | |||
|UniProt=P54821 | |UniProt=P54821 | ||
|association_with_transcript=-160bp_to_ENST00000367760_5end | |association_with_transcript=-160bp_to_ENST00000367760_5end | ||
|cluster_id=chr1:170632108..170632114,+ | |||
|coexpression_cluster_id=C3903 | |coexpression_cluster_id=C3903 | ||
|description=CAGE_peak_29_at_PRRX1_5end | |description=CAGE_peak_29_at_PRRX1_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000057!2.38e-20!75;CL:0000055!2.89e-18!180;CL:0002620!1.08e-12!23;CL:0000048!1.87e-07!430;CL:0002539!1.90e-07!10;CL:0000723!5.47e-07!436;CL:0002334!8.61e-07!12 | |ontology_enrichment_celltype=CL:0000057!2.38e-20!75;CL:0000055!2.89e-18!180;CL:0002620!1.08e-12!23;CL:0000048!1.87e-07!430;CL:0002539!1.90e-07!10;CL:0000723!5.47e-07!436;CL:0002334!8.61e-07!12 | ||
|ontology_enrichment_celltype_v019=CL:0002573;1.60e-13;2!CL:0000511;9.04e-11;1!CL:0002625;9.04e-11;1!CL:0000216;9.04e-11;1!CL:0002552;1.79e-08;5 | |ontology_enrichment_celltype_v019=CL:0002573;1.60e-13;2!CL:0000511;9.04e-11;1!CL:0002625;9.04e-11;1!CL:0000216;9.04e-11;1!CL:0002552;1.79e-08;5 | ||
|ontology_enrichment_celltype_v019_2=CL:0002573,9.60e-14,2;CL:0000511,5.57e-11,1;CL:0002625,5.57e-11,1;CL:0000216,5.57e-11,1;CL:0002552,2.08e-08,5 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003102!1.41e-10!95;UBERON:0002199!2.58e-10!45;UBERON:0002416!2.58e-10!45;UBERON:0000914!4.05e-10!83;UBERON:0002329!4.05e-10!83;UBERON:0003077!4.05e-10!83;UBERON:0003059!4.05e-10!83;UBERON:0007282!4.05e-10!83;UBERON:0009618!4.05e-10!83;UBERON:0007285!4.05e-10!83;UBERON:0002097!5.00e-09!40;UBERON:0004290!1.76e-08!70;UBERON:0004237!1.90e-07!10;UBERON:0004695!1.90e-07!10;UBERON:0002111!1.90e-07!10;UBERON:0004178!1.90e-07!10 | |ontology_enrichment_uberon=UBERON:0003102!1.41e-10!95;UBERON:0002199!2.58e-10!45;UBERON:0002416!2.58e-10!45;UBERON:0000914!4.05e-10!83;UBERON:0002329!4.05e-10!83;UBERON:0003077!4.05e-10!83;UBERON:0003059!4.05e-10!83;UBERON:0007282!4.05e-10!83;UBERON:0009618!4.05e-10!83;UBERON:0007285!4.05e-10!83;UBERON:0002097!5.00e-09!40;UBERON:0004290!1.76e-08!70;UBERON:0004237!1.90e-07!10;UBERON:0004695!1.90e-07!10;UBERON:0002111!1.90e-07!10;UBERON:0004178!1.90e-07!10 | ||
|ontology_enrichment_uberon_v019=UBERON:0001136;9.04e-11;1!UBERON:0001343;9.04e-11;1!UBERON:0004910;9.04e-11;1!UBERON:0004813;9.04e-11;1!UBERON:0002346;1.30e-10;4!UBERON:0000923;1.30e-10;4!UBERON:0010316;1.30e-10;4!UBERON:0005291;1.30e-10;4!UBERON:0002050;1.15e-08;5!UBERON:0005423;1.15e-08;5 | |ontology_enrichment_uberon_v019=UBERON:0001136;9.04e-11;1!UBERON:0001343;9.04e-11;1!UBERON:0004910;9.04e-11;1!UBERON:0004813;9.04e-11;1!UBERON:0002346;1.30e-10;4!UBERON:0000923;1.30e-10;4!UBERON:0010316;1.30e-10;4!UBERON:0005291;1.30e-10;4!UBERON:0002050;1.15e-08;5!UBERON:0005423;1.15e-08;5 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001136,5.57e-11,1;UBERON:0001343,5.57e-11,1;UBERON:0004910,5.57e-11,1;UBERON:0005154,5.57e-11,1;UBERON:0005295,5.57e-11,1;UBERON:0004813,5.57e-11,1;UBERON:0005297,5.57e-11,1;UBERON:0005294,5.57e-11,1;UBERON:0010141,5.57e-11,1;UBERON:0005891,5.57e-11,1 | |||
|phase1_expression=0.363356758541113,0.428201047781966,0.140954404095971,0,0,0,0,0,0.522371256399677,0,0,0,0,0,0,0.672325146451775,0.602694528023977,1.46062018077475,0.487932798790507,0,0,0,0,0,0,1.22261449196722,0.985207073399349,0.787107813136792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0.144846518960824,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.860234595106124,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.379891534993739,0,0,0.354668382198357,0,1.06748995729705,0,0.622422070799533,0,0.326923806226917,0,0,0.468642863667593,0.936480230490962,0,0.896692083310806,0.352303495931295,0.161872944368132,0.842704840213491,0.61246251376468,0.491337269247072,1.23990937410919,1.18800285728205,0.247266929278557,0,0,0.841680569770331,1.12606667884768,0.554128230968366,0,0,0.901428353439581,0.113432183160021,0.179389635688862,0.213557388818567,0.635795703478686,0.300091096084402,0.206105058476878,0,0.18611685633159,0.337552664482532,0.389748020644795,0.252433774244115,0.368199594569197,0.80823028409406,0,0.10075209822764,0.169560592310488,0,0,0,0,0,0,0,0,0,1.56449532329816,0.643240938192885,0,0.928735856063958,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0.224262168690721,0,0.1466765716419,0.387815147273333,3.57656445851882,0.845302752556,0.26593811658487,0,0.257207374262142,0,0.532844358032199,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205476322550383,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0,0.500170521059677,0,0.415941723061614,0.178428988797162,0.315404830067869,0.937131319941706,0.601892199455438,0,0,0,0.184369168541703,0.781952530212746,0,0,0,0,0,0,0,0,0.744323423456331,0.460385919864187,0.561320188866147,0.384417447767103,1.02341449813341,0,0,0.462629081407967,0.710246901252508,0.328508624055237,0,0.116210378459959,0,0,0,0,0,0.393373244878272,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,0,0.325378394664303,0.103041011647722,0,0,0,0,1.6068392984416,0.193341436584244,0,0.15350367472613,0,0.214840489736547,0,0.0852266274161009,0.267096106940212,0,0,0,0,0,0.31481234683064,0.6970372701606,0.616067160352178,0,0.869932992075073,0.37064843820784,0.286249773483982,0,0,0,0,0.855877976067841,2.54562598340749,0,0,0,0,0,0,0,0,0.974853958525138,0,0.545999645631943,0,0,0.551365343546124,0,0,0,0,0,0,0,0.430234056612155,0,0.35667105148125,0.709522128141196,0.844430541190656,0,0.75894634753143,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,2.09244169283818,0,0,0,0,0.394573622547734,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0.885741385813839,0.120596438625408,0,0,0,0,0,0,0.307801034015188,0,0,0,0,0,0.183195186803725,0,0,0,0,0,0,0,0,0,0,0,0,0.649165919226273,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.947798694427319,0,0,0,0,0,0,0,0.554698692052555,0,0,0,0,0.171986032471617,0,0,0,0.0969890164884194,0,0,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0.271808412147228,0.104602846312333,0,0,0,0,0,0,0,0,0.229160424011684,0,0,0,0,0.134366944973453,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0.714695326373367,0,0.25426853765475,0.542999601753713,0,0,0,0,0.340776043570843,0,0,0,0.129282956361551,0.26446520348538,0,0,0.213574825135389,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124192805882767,0,0,0,0,0,0,0,0.298509605773748,0.233713309847224,0,0.378806010550178,0.50313580350515,0,0.457680136793847,0.453692771289717,1.39893480524502,0.443565449968902,0.63718706865481,2.69881867298163,0.931577741257556,0,0,1.04349012362347,0.150257608997218,0,0,0.545545977607678,0.429642228169954,0.464033759878494,0.796191777397232,0,0.343395705182793,0.336749488765919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.552317850755522,0,0,0,0.107824811396682,0.314531883711793,0,0,1.91317428091515,0,0,0,0,0,0.352675943690684,0,0.0642292250964595,0,0,0,0,0,0.322951291263702,0,0,0,0,0,0,0,0.397832444232549,0.300841313397029,0,0,0,0,0,0,0,0,0,0,0,0.496211178389294,3.51742488719241,0,0,0,0,0,0,0,0,0.0679697329768317,0,0,0,0.39246546425257,0,0,0,0,0,0.285906176706625,0,0,0,0,0,0,0,0,1.65664801022791,1.44862788090568,0,0,0.31020638566432,0,0,0,0,0,0.821302454849976,0,0.485710993059139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169927114687817,0,0,4.29746970477194,0,0,0,0,0,0,0,0,0,0,0.743990036333503,1.38652688589425,0,0,0,0,0,0,0,0,0.227336094654718,0,0,0,0.213233981900981,0,0.129177819672012,0.0620747142958579,0,0.25458863311266,0,0.435433495793923,0,0.26940821205835,0.430333232356058,0,0,0,0,0,0,0.122241444182866,0,0,0.201273793591026,0 | |phase1_expression=0.363356758541113,0.428201047781966,0.140954404095971,0,0,0,0,0,0.522371256399677,0,0,0,0,0,0,0.672325146451775,0.602694528023977,1.46062018077475,0.487932798790507,0,0,0,0,0,0,1.22261449196722,0.985207073399349,0.787107813136792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0.144846518960824,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.860234595106124,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.379891534993739,0,0,0.354668382198357,0,1.06748995729705,0,0.622422070799533,0,0.326923806226917,0,0,0.468642863667593,0.936480230490962,0,0.896692083310806,0.352303495931295,0.161872944368132,0.842704840213491,0.61246251376468,0.491337269247072,1.23990937410919,1.18800285728205,0.247266929278557,0,0,0.841680569770331,1.12606667884768,0.554128230968366,0,0,0.901428353439581,0.113432183160021,0.179389635688862,0.213557388818567,0.635795703478686,0.300091096084402,0.206105058476878,0,0.18611685633159,0.337552664482532,0.389748020644795,0.252433774244115,0.368199594569197,0.80823028409406,0,0.10075209822764,0.169560592310488,0,0,0,0,0,0,0,0,0,1.56449532329816,0.643240938192885,0,0.928735856063958,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0.224262168690721,0,0.1466765716419,0.387815147273333,3.57656445851882,0.845302752556,0.26593811658487,0,0.257207374262142,0,0.532844358032199,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205476322550383,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0,0.500170521059677,0,0.415941723061614,0.178428988797162,0.315404830067869,0.937131319941706,0.601892199455438,0,0,0,0.184369168541703,0.781952530212746,0,0,0,0,0,0,0,0,0.744323423456331,0.460385919864187,0.561320188866147,0.384417447767103,1.02341449813341,0,0,0.462629081407967,0.710246901252508,0.328508624055237,0,0.116210378459959,0,0,0,0,0,0.393373244878272,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,0,0.325378394664303,0.103041011647722,0,0,0,0,1.6068392984416,0.193341436584244,0,0.15350367472613,0,0.214840489736547,0,0.0852266274161009,0.267096106940212,0,0,0,0,0,0.31481234683064,0.6970372701606,0.616067160352178,0,0.869932992075073,0.37064843820784,0.286249773483982,0,0,0,0,0.855877976067841,2.54562598340749,0,0,0,0,0,0,0,0,0.974853958525138,0,0.545999645631943,0,0,0.551365343546124,0,0,0,0,0,0,0,0.430234056612155,0,0.35667105148125,0.709522128141196,0.844430541190656,0,0.75894634753143,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,2.09244169283818,0,0,0,0,0.394573622547734,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0.885741385813839,0.120596438625408,0,0,0,0,0,0,0.307801034015188,0,0,0,0,0,0.183195186803725,0,0,0,0,0,0,0,0,0,0,0,0,0.649165919226273,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.947798694427319,0,0,0,0,0,0,0,0.554698692052555,0,0,0,0,0.171986032471617,0,0,0,0.0969890164884194,0,0,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0.271808412147228,0.104602846312333,0,0,0,0,0,0,0,0,0.229160424011684,0,0,0,0,0.134366944973453,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0.714695326373367,0,0.25426853765475,0.542999601753713,0,0,0,0,0.340776043570843,0,0,0,0.129282956361551,0.26446520348538,0,0,0.213574825135389,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124192805882767,0,0,0,0,0,0,0,0.298509605773748,0.233713309847224,0,0.378806010550178,0.50313580350515,0,0.457680136793847,0.453692771289717,1.39893480524502,0.443565449968902,0.63718706865481,2.69881867298163,0.931577741257556,0,0,1.04349012362347,0.150257608997218,0,0,0.545545977607678,0.429642228169954,0.464033759878494,0.796191777397232,0,0.343395705182793,0.336749488765919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.552317850755522,0,0,0,0.107824811396682,0.314531883711793,0,0,1.91317428091515,0,0,0,0,0,0.352675943690684,0,0.0642292250964595,0,0,0,0,0,0.322951291263702,0,0,0,0,0,0,0,0.397832444232549,0.300841313397029,0,0,0,0,0,0,0,0,0,0,0,0.496211178389294,3.51742488719241,0,0,0,0,0,0,0,0,0.0679697329768317,0,0,0,0.39246546425257,0,0,0,0,0,0.285906176706625,0,0,0,0,0,0,0,0,1.65664801022791,1.44862788090568,0,0,0.31020638566432,0,0,0,0,0,0.821302454849976,0,0.485710993059139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169927114687817,0,0,4.29746970477194,0,0,0,0,0,0,0,0,0,0,0.743990036333503,1.38652688589425,0,0,0,0,0,0,0,0,0.227336094654718,0,0,0,0.213233981900981,0,0.129177819672012,0.0620747142958579,0,0.25458863311266,0,0.435433495793923,0,0.26940821205835,0.430333232356058,0,0,0,0,0,0,0.122241444182866,0,0,0.201273793591026,0 | ||
|short_description=p29@PRRX1 | |short_description=p29@PRRX1 | ||
}} | }} |
Latest revision as of 14:05, 18 September 2015
Short description: | p29@PRRX1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_29_at_PRRX1_5end |
Coexpression cluster: | C3903_peripheral_splenic_mesenchymal_neuroectodermal_b_dura_Fibroblast |
Association with transcript: | -160bp_to_ENST00000367760_5end |
EntrezGene: | PRRX1 |
HGNC: | 9142 |
UniProt: | P54821 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Schwann cell | 9.60e-14 | 2 |
androgen binding protein secreting cell | 5.57e-11 | 1 |
seminiferous tubule epithelial cell | 5.57e-11 | 1 |
Sertoli cell | 5.57e-11 | 1 |
fibroblast of gingiva | 2.08e-08 | 5 |
Ontology term | p-value | n |
---|---|---|
mesothelium | 5.57e-11 | 1 |
seminiferous tubule of testis | 5.57e-11 | 1 |
epithelium of male gonad | 5.57e-11 | 1 |
epithelial cord | 5.57e-11 | 1 |
sex cord | 5.57e-11 | 1 |
seminiferous tubule epithelium | 5.57e-11 | 1 |
testis sex cord | 5.57e-11 | 1 |
genital ridge | 5.57e-11 | 1 |
primitive sex cord of indifferent gonad | 5.57e-11 | 1 |
coelomic epithelium | 5.57e-11 | 1 |