FFCP PHASE1:Hg19::chr12:48298785..48298828,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7421 | |EntrezGene=7421 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12679 | |HGNC=12679 | ||
|TSSclassifier=strong | |||
|UniProt=P11473,B4DRV7,F8VRJ4,F8VXQ9,F8VPF8,G3V1V9,F1D8P8 | |UniProt=P11473,B4DRV7,F8VRJ4,F8VXQ9,F8VPF8,G3V1V9,F1D8P8 | ||
|association_with_transcript=0bp_to_ENST00000229022,ENST00000535672,ENST00000546653,ENST00000547065,ENST00000548664,ENST00000549336,ENST00000550325,NM_000376,NM_001017535,NM_001017536,uc001rql.2,uc001rqm.2,uc001rqn.2,uc010slq.1_5end | |association_with_transcript=0bp_to_ENST00000229022,ENST00000535672,ENST00000546653,ENST00000547065,ENST00000548664,ENST00000549336,ENST00000550325,NM_000376,NM_001017535,NM_001017536,uc001rql.2,uc001rqm.2,uc001rqn.2,uc010slq.1_5end | ||
|cluster_id=chr12:48298785..48298828,- | |||
|coexpression_cluster_id=C26 | |||
|description=CAGE_peak_1_at_VDR_5end | |description=CAGE_peak_1_at_VDR_5end | ||
|id=chr12:48298785..48298828,- | |id=chr12:48298785..48298828,- | ||
|ontology_enrichment_celltype=CL:0002057!2.73e-25!42;CL:0000766!1.25e-24!76;CL:0000860!1.15e-23!45;CL:0002009!3.74e-22!65;CL:0000557!1.42e-21!71;CL:0002194!4.53e-21!63;CL:0000576!4.53e-21!63;CL:0000040!4.53e-21!63;CL:0000559!4.53e-21!63;CL:0000763!1.74e-20!112;CL:0000049!1.74e-20!112;CL:0000839!2.04e-18!70;CL:0002371!2.88e-13!591;CL:0000063!8.97e-12!578;CL:0000548!1.02e-11!679;CL:0000004!1.02e-11!679;CL:0000255!1.02e-11!679;CL:0000012!1.74e-11!682;CL:0000134!2.29e-10!358;CL:0000723!8.72e-10!436;CL:0002320!8.75e-10!365;CL:0000144!1.68e-09!625;CL:0000048!2.90e-09!430;CL:0000003!4.17e-09!722;CL:0000034!2.31e-08!444;CL:0000219!9.64e-08!390;CL:0000738!2.71e-07!140;CL:0002032!2.79e-07!165;CL:0000837!2.79e-07!165;CL:0000037!6.49e-07!172;CL:0000566!6.49e-07!172;CL:0000988!7.48e-07!182 | |ontology_enrichment_celltype=CL:0002057!2.73e-25!42;CL:0000766!1.25e-24!76;CL:0000860!1.15e-23!45;CL:0002009!3.74e-22!65;CL:0000557!1.42e-21!71;CL:0002194!4.53e-21!63;CL:0000576!4.53e-21!63;CL:0000040!4.53e-21!63;CL:0000559!4.53e-21!63;CL:0000763!1.74e-20!112;CL:0000049!1.74e-20!112;CL:0000839!2.04e-18!70;CL:0002371!2.88e-13!591;CL:0000063!8.97e-12!578;CL:0000548!1.02e-11!679;CL:0000004!1.02e-11!679;CL:0000255!1.02e-11!679;CL:0000012!1.74e-11!682;CL:0000134!2.29e-10!358;CL:0000723!8.72e-10!436;CL:0002320!8.75e-10!365;CL:0000144!1.68e-09!625;CL:0000048!2.90e-09!430;CL:0000003!4.17e-09!722;CL:0000034!2.31e-08!444;CL:0000219!9.64e-08!390;CL:0000738!2.71e-07!140;CL:0002032!2.79e-07!165;CL:0000837!2.79e-07!165;CL:0000037!6.49e-07!172;CL:0000566!6.49e-07!172;CL:0000988!7.48e-07!182 | ||
|ontology_enrichment_celltype_v019=CL:0000860;6.72e-20;33!CL:0002057;6.72e-20;33!CL:0000473;8.55e-16;39!CL:0000234;8.55e-16;39!CL:0000576;3.78e-14;48!CL:0000766;8.13e-12;69!CL:0000763;8.33e-07;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.16e-25,42;CL:0002057,1.16e-25,42;CL:0000766,1.96e-25,72;CL:0000473,5.26e-24,48;CL:0000234,5.26e-24,48;CL:0002009,5.60e-23,61;CL:0000557,2.79e-22,67;CL:0002194,7.29e-22,59;CL:0000576,7.29e-22,59;CL:0000040,7.29e-22,59;CL:0000559,7.29e-22,59;CL:0000763,8.81e-21,108;CL:0000049,8.81e-21,108;CL:0000839,4.55e-19,66;CL:0000134,2.56e-10,354;CL:0000723,6.36e-10,433;CL:0002320,9.95e-10,361;CL:0000048,2.25e-09,427;CL:0000034,1.53e-08,441;CL:0000219,7.88e-08,386;CL:0000738,3.25e-07,136;CL:0002032,4.09e-07,161;CL:0000837,4.09e-07,161;CL:0000988,4.88e-07,177;CL:0000037,8.54e-07,168 | |||
|ontology_enrichment_development_v019=CL:0002057;7.06e-19;42!CL:0000049;7.53e-07;108 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!2.03e-20!80;UBERON:0002390!2.26e-20!102;UBERON:0003061!2.26e-20!102;UBERON:0001474!2.88e-19!86;UBERON:0004765!2.79e-18!101;UBERON:0001434!2.79e-18!101;UBERON:0002204!2.28e-17!167;UBERON:0002193!8.77e-17!112;UBERON:0002384!1.03e-09!375;UBERON:0002405!7.40e-09!115;UBERON:0000926!2.03e-08!448;UBERON:0004120!2.03e-08!448;UBERON:0006603!2.03e-08!448;UBERON:0003102!1.13e-07!95 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,5.64e-21,76;UBERON:0002390,9.80e-21,98;UBERON:0003061,9.80e-21,98;UBERON:0001474,9.45e-20,82;UBERON:0004765,8.83e-19,90;UBERON:0001434,2.19e-17,100;UBERON:0002193,4.06e-17,108;UBERON:0002204,6.14e-17,167;UBERON:0002405,3.32e-14,93;UBERON:0002384,1.56e-09,371;UBERON:0003102,1.28e-08,99 | |||
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| ||
|short_description=p1@VDR | |short_description=p1@VDR | ||
}} | }} |
Latest revision as of 13:31, 18 September 2015
Short description: | p1@VDR |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_VDR_5end |
Coexpression cluster: | C26_Eosinophils_Neutrophils_CD14_CD14CD16_Basophils_Monocytederived_Whole |
Association with transcript: | 0bp_to_ENST00000229022, ENST00000535672, ENST00000546653, ENST00000547065, ENST00000548664, ENST00000549336, ENST00000550325, NM_000376, NM_001017535, NM_001017536, uc001rql.2, uc001rqm.2, uc001rqn.2, uc010slq.1_5end |
EntrezGene: | VDR |
HGNC: | 12679 |
UniProt: | P11473B4DRV7F8VRJ4F8VXQ9F8VPF8G3V1V9F1D8P8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.16e-25 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.16e-25 | 42 |
myeloid leukocyte | 1.96e-25 | 72 |
defensive cell | 5.26e-24 | 48 |
phagocyte | 5.26e-24 | 48 |
macrophage dendritic cell progenitor | 5.60e-23 | 61 |
granulocyte monocyte progenitor cell | 2.79e-22 | 67 |
monopoietic cell | 7.29e-22 | 59 |
monocyte | 7.29e-22 | 59 |
monoblast | 7.29e-22 | 59 |
promonocyte | 7.29e-22 | 59 |
myeloid cell | 8.81e-21 | 108 |
common myeloid progenitor | 8.81e-21 | 108 |
myeloid lineage restricted progenitor cell | 4.55e-19 | 66 |
mesenchymal cell | 2.56e-10 | 354 |
somatic stem cell | 6.36e-10 | 433 |
connective tissue cell | 9.95e-10 | 361 |
multi fate stem cell | 2.25e-09 | 427 |
stem cell | 1.53e-08 | 441 |
motile cell | 7.88e-08 | 386 |
leukocyte | 3.25e-07 | 136 |
hematopoietic oligopotent progenitor cell | 4.09e-07 | 161 |
hematopoietic multipotent progenitor cell | 4.09e-07 | 161 |
hematopoietic cell | 4.88e-07 | 177 |
hematopoietic stem cell | 8.54e-07 | 168 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 5.64e-21 | 76 |
hematopoietic system | 9.80e-21 | 98 |
blood island | 9.80e-21 | 98 |
bone element | 9.45e-20 | 82 |
skeletal element | 8.83e-19 | 90 |
skeletal system | 2.19e-17 | 100 |
hemolymphoid system | 4.06e-17 | 108 |
musculoskeletal system | 6.14e-17 | 167 |
immune system | 3.32e-14 | 93 |
connective tissue | 1.56e-09 | 371 |
surface structure | 1.28e-08 | 99 |