FFCP PHASE1:Hg19::chr12:48298765..48298783,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7421 | |EntrezGene=7421 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12679 | |HGNC=12679 | ||
|TSSclassifier=strong | |||
|UniProt=G3V1V9 | |UniProt=G3V1V9 | ||
|association_with_transcript=2bp_to_ENST00000550325,uc001rql.2_5end | |association_with_transcript=2bp_to_ENST00000550325,uc001rql.2_5end | ||
|cluster_id=chr12:48298765..48298783,- | |||
|coexpression_cluster_id=C65 | |||
|description=CAGE_peak_2_at_VDR_5end | |description=CAGE_peak_2_at_VDR_5end | ||
|id=chr12:48298765..48298783,- | |id=chr12:48298765..48298783,- | ||
|ontology_enrichment_celltype=CL:0000766!9.92e-22!76;CL:0002057!6.57e-21!42;CL:0000860!8.20e-20!45;CL:0000557!2.39e-19!71;CL:0002009!7.95e-19!65;CL:0002194!7.92e-18!63;CL:0000576!7.92e-18!63;CL:0000040!7.92e-18!63;CL:0000559!7.92e-18!63;CL:0000839!1.29e-16!70;CL:0000763!2.39e-13!112;CL:0000049!2.39e-13!112;CL:0000063!3.74e-08!578;CL:0000548!7.49e-08!679;CL:0000004!7.49e-08!679;CL:0000255!7.49e-08!679;CL:0002076!1.63e-07!43;CL:0000012!1.68e-07!682;CL:0002371!1.70e-07!591 | |ontology_enrichment_celltype=CL:0000766!9.92e-22!76;CL:0002057!6.57e-21!42;CL:0000860!8.20e-20!45;CL:0000557!2.39e-19!71;CL:0002009!7.95e-19!65;CL:0002194!7.92e-18!63;CL:0000576!7.92e-18!63;CL:0000040!7.92e-18!63;CL:0000559!7.92e-18!63;CL:0000839!1.29e-16!70;CL:0000763!2.39e-13!112;CL:0000049!2.39e-13!112;CL:0000063!3.74e-08!578;CL:0000548!7.49e-08!679;CL:0000004!7.49e-08!679;CL:0000255!7.49e-08!679;CL:0002076!1.63e-07!43;CL:0000012!1.68e-07!682;CL:0002371!1.70e-07!591 | ||
|ontology_enrichment_celltype_v019=CL:0000860;2.05e-20;33!CL:0002057;2.05e-20;33!CL:0000473;7.59e-17;39!CL:0000234;7.59e-17;39!CL:0000576;6.48e-13;48!CL:0000766;2.79e-11;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,2.23e-24,72;CL:0000860,3.20e-23,42;CL:0002057,3.20e-23,42;CL:0000473,1.24e-22,48;CL:0000234,1.24e-22,48;CL:0000557,1.10e-21,67;CL:0002009,3.77e-21,61;CL:0002194,5.13e-20,59;CL:0000576,5.13e-20,59;CL:0000040,5.13e-20,59;CL:0000559,5.13e-20,59;CL:0000839,5.60e-19,66;CL:0000763,1.35e-13,108;CL:0000049,1.35e-13,108;CL:0002076,8.75e-08,42 | |||
|ontology_enrichment_development_v019=CL:0002057;1.61e-17;42 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.74e-17!102;UBERON:0003061!1.74e-17!102;UBERON:0002371!7.92e-17!80;UBERON:0001474!2.64e-15!86;UBERON:0004765!5.77e-14!101;UBERON:0001434!5.77e-14!101;UBERON:0002204!9.17e-14!167;UBERON:0002193!1.10e-13!112;UBERON:0000926!1.05e-09!448;UBERON:0004120!1.05e-09!448;UBERON:0006603!1.05e-09!448;UBERON:0002405!6.76e-07!115 | |ontology_enrichment_uberon=UBERON:0002390!1.74e-17!102;UBERON:0003061!1.74e-17!102;UBERON:0002371!7.92e-17!80;UBERON:0001474!2.64e-15!86;UBERON:0004765!5.77e-14!101;UBERON:0001434!5.77e-14!101;UBERON:0002204!9.17e-14!167;UBERON:0002193!1.10e-13!112;UBERON:0000926!1.05e-09!448;UBERON:0004120!1.05e-09!448;UBERON:0006603!1.05e-09!448;UBERON:0002405!6.76e-07!115 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,4.79e-19,98;UBERON:0003061,4.79e-19,98;UBERON:0002371,1.05e-18,76;UBERON:0001474,8.06e-17,82;UBERON:0004765,7.27e-16,90;UBERON:0002193,1.55e-15,108;UBERON:0001434,2.59e-14,100;UBERON:0002405,1.15e-12,93;UBERON:0002204,1.56e-12,167;UBERON:0003081,8.77e-07,203 | |||
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| ||
|short_description=p2@VDR | |short_description=p2@VDR | ||
}} | }} |
Latest revision as of 13:30, 18 September 2015
Short description: | p2@VDR |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_VDR_5end |
Coexpression cluster: | C65_CD14_Eosinophils_Monocytederived_Basophils_immature_Macrophage_Neutrophils |
Association with transcript: | 2bp_to_ENST00000550325, uc001rql.2_5end |
EntrezGene: | VDR |
HGNC: | 12679 |
UniProt: | G3V1V9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 2.23e-24 | 72 |
classical monocyte | 3.20e-23 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.20e-23 | 42 |
defensive cell | 1.24e-22 | 48 |
phagocyte | 1.24e-22 | 48 |
granulocyte monocyte progenitor cell | 1.10e-21 | 67 |
macrophage dendritic cell progenitor | 3.77e-21 | 61 |
monopoietic cell | 5.13e-20 | 59 |
monocyte | 5.13e-20 | 59 |
monoblast | 5.13e-20 | 59 |
promonocyte | 5.13e-20 | 59 |
myeloid lineage restricted progenitor cell | 5.60e-19 | 66 |
myeloid cell | 1.35e-13 | 108 |
common myeloid progenitor | 1.35e-13 | 108 |
endo-epithelial cell | 8.75e-08 | 42 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 4.79e-19 | 98 |
blood island | 4.79e-19 | 98 |
bone marrow | 1.05e-18 | 76 |
bone element | 8.06e-17 | 82 |
skeletal element | 7.27e-16 | 90 |
hemolymphoid system | 1.55e-15 | 108 |
skeletal system | 2.59e-14 | 100 |
immune system | 1.15e-12 | 93 |
musculoskeletal system | 1.56e-12 | 167 |
lateral plate mesoderm | 8.77e-07 | 203 |