FFCP PHASE1:Hg19::chr14:102606215..102606257,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=91833 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19667 | |||
|TSSclassifier=strong | |||
|UniProt=F8W9S4,Q8TBZ3,E7EUY8,F5H8E6,G3V5R0,G3V5V2,G3V2F8 | |||
|association_with_transcript=0bp_to_ENST00000299135,ENST00000342702,ENST00000454394,ENST00000499851,ENST00000555879,ENST00000556094,ENST00000556807,ENST00000558567,ENST00000561154,uc001ylf.2_5end | |||
|cluster_id=chr14:102606215..102606257,+ | |||
|description=CAGE_peak_1_at_WDR20_5end | |||
|id=chr14:102606215..102606257,+ | |||
|ontology_enrichment_celltype=CL:0000738!8.60e-14!140;CL:0002031!3.23e-11!124;CL:0002087!2.49e-09!119;CL:0000791!1.71e-08!18;CL:0000789!1.71e-08!18;CL:0002420!1.71e-08!18;CL:0002419!1.71e-08!18;CL:0000790!1.71e-08!18;CL:0000037!4.25e-07!172;CL:0000566!4.25e-07!172;CL:0000625!8.46e-07!11 | |||
|ontology_enrichment_celltype_v019=CL:0000791;1.47e-08;18!CL:0000789;1.47e-08;18!CL:0002419;1.47e-08;18!CL:0000625;8.59e-07;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,2.70e-15,136;CL:0002031,1.25e-12,120;CL:0002087,1.31e-10,115;CL:0000791,1.71e-08,18;CL:0000789,1.71e-08,18;CL:0002420,1.71e-08,18;CL:0002419,1.71e-08,18;CL:0000790,1.71e-08,18;CL:0000037,5.79e-08,168;CL:0000766,3.12e-07,72;CL:0002032,3.46e-07,161;CL:0000837,3.46e-07,161;CL:0000625,8.46e-07,11 | |||
|ontology_enrichment_development_v019=CL:0000790;1.47e-08;18 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!7.75e-33!115;UBERON:0001049!2.25e-22!57;UBERON:0005068!2.25e-22!57;UBERON:0006241!2.25e-22!57;UBERON:0007135!2.25e-22!57;UBERON:0002616!3.16e-19!59;UBERON:0002780!7.51e-18!41;UBERON:0001890!7.51e-18!41;UBERON:0006240!7.51e-18!41;UBERON:0003080!8.11e-18!42;UBERON:0001017!1.37e-17!82;UBERON:0005743!2.04e-16!86;UBERON:0000955!1.95e-15!69;UBERON:0006238!1.95e-15!69;UBERON:0001893!7.64e-15!34;UBERON:0002020!1.98e-14!34;UBERON:0003528!1.98e-14!34;UBERON:0002791!2.45e-14!33;UBERON:0000073!3.12e-14!94;UBERON:0001016!3.12e-14!94;UBERON:0001869!1.47e-13!32;UBERON:0002619!6.47e-12!22;UBERON:0003075!1.41e-11!86;UBERON:0007284!1.41e-11!86;UBERON:0001950!4.94e-11!20;UBERON:0002346!8.44e-11!90;UBERON:0000956!2.36e-10!25;UBERON:0000203!2.36e-10!25;UBERON:0003056!8.08e-09!61;UBERON:0000153!2.75e-07!129;UBERON:0007811!2.75e-07!129 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;5.17e-13;41!UBERON:0001890;5.17e-13;41!UBERON:0000073;5.31e-13;53!UBERON:0002616;5.31e-13;53!UBERON:0001893;1.40e-12;34!UBERON:0003528;3.10e-12;34!UBERON:0002020;3.10e-12;34!UBERON:0002791;3.34e-12;32!UBERON:0001869;4.44e-12;32!UBERON:0002619;7.40e-12;22!UBERON:0001950;5.35e-11;20!UBERON:0000956;2.65e-10;25!UBERON:0000203;2.65e-10;25!UBERON:0007023;6.77e-10;114!UBERON:0001017;2.05e-08;75!UBERON:0000955;2.27e-07;68!UBERON:0001016;8.31e-07;83 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.97e-32,114;UBERON:0001049,2.18e-22,56;UBERON:0005068,2.18e-22,56;UBERON:0006241,2.18e-22,56;UBERON:0007135,2.18e-22,56;UBERON:0000073,6.62e-21,53;UBERON:0002616,6.62e-21,53;UBERON:0002780,7.51e-18,41;UBERON:0001890,7.51e-18,41;UBERON:0003080,7.51e-18,41;UBERON:0006240,7.51e-18,41;UBERON:0001017,1.59e-17,81;UBERON:0000955,2.23e-15,68;UBERON:0006238,2.23e-15,68;UBERON:0001016,4.13e-15,89;UBERON:0001893,7.64e-15,34;UBERON:0003528,1.98e-14,34;UBERON:0002020,1.98e-14,34;UBERON:0002791,1.09e-13,32;UBERON:0001869,1.47e-13,32;UBERON:0003075,1.92e-12,82;UBERON:0007284,1.92e-12,82;UBERON:0002619,6.47e-12,22;UBERON:0002346,1.38e-11,86;UBERON:0001950,4.94e-11,20;UBERON:0000956,2.36e-10,25;UBERON:0000203,2.36e-10,25;UBERON:0003056,3.37e-09,61;UBERON:0010371,1.44e-08,104 | |||
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| |||
|short_description=p1@WDR20 | |||
}} |
Latest revision as of 13:27, 18 September 2015
Short description: | p1@WDR20 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_WDR20_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000299135, ENST00000342702, ENST00000454394, ENST00000499851, ENST00000555879, ENST00000556094, ENST00000556807, ENST00000558567, ENST00000561154, uc001ylf.2_5end |
EntrezGene: | WDR20 |
HGNC: | 19667 |
UniProt: | F8W9S4Q8TBZ3E7EUY8F5H8E6G3V5R0G3V5V2G3V2F8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 2.70e-15 | 136 |
hematopoietic lineage restricted progenitor cell | 1.25e-12 | 120 |
nongranular leukocyte | 1.31e-10 | 115 |
mature alpha-beta T cell | 1.71e-08 | 18 |
alpha-beta T cell | 1.71e-08 | 18 |
immature T cell | 1.71e-08 | 18 |
mature T cell | 1.71e-08 | 18 |
immature alpha-beta T cell | 1.71e-08 | 18 |
hematopoietic stem cell | 5.79e-08 | 168 |
myeloid leukocyte | 3.12e-07 | 72 |
hematopoietic oligopotent progenitor cell | 3.46e-07 | 161 |
hematopoietic multipotent progenitor cell | 3.46e-07 | 161 |
CD8-positive, alpha-beta T cell | 8.46e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
adult organism | 2.97e-32 | 114 |
neural tube | 2.18e-22 | 56 |
neural rod | 2.18e-22 | 56 |
future spinal cord | 2.18e-22 | 56 |
neural keel | 2.18e-22 | 56 |
regional part of nervous system | 6.62e-21 | 53 |
regional part of brain | 6.62e-21 | 53 |
regional part of forebrain | 7.51e-18 | 41 |
forebrain | 7.51e-18 | 41 |
anterior neural tube | 7.51e-18 | 41 |
future forebrain | 7.51e-18 | 41 |
central nervous system | 1.59e-17 | 81 |
brain | 2.23e-15 | 68 |
future brain | 2.23e-15 | 68 |
nervous system | 4.13e-15 | 89 |
telencephalon | 7.64e-15 | 34 |
brain grey matter | 1.98e-14 | 34 |
gray matter | 1.98e-14 | 34 |
regional part of telencephalon | 1.09e-13 | 32 |
cerebral hemisphere | 1.47e-13 | 32 |
neural plate | 1.92e-12 | 82 |
presumptive neural plate | 1.92e-12 | 82 |
regional part of cerebral cortex | 6.47e-12 | 22 |
neurectoderm | 1.38e-11 | 86 |
neocortex | 4.94e-11 | 20 |
cerebral cortex | 2.36e-10 | 25 |
pallium | 2.36e-10 | 25 |
pre-chordal neural plate | 3.37e-09 | 61 |
ecto-epithelium | 1.44e-08 | 104 |