FFCP PHASE1:Hg19::chr1:53556610..53556625,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:53556610..53556625,- to FFCP PHASE1:Hg19::chr1:53556610..53556625,-: NSchange) |
No edit summary |
||
(10 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6512 | |EntrezGene=6512 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10945 | |HGNC=10945 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=28bp_to_ENST00000488036,uc001cux.2_5end | |||
|cluster_id=chr1:53556610..53556625,- | |||
|coexpression_cluster_id=C3986 | |||
|description=CAGE_peak_4_at_SLC1A7_5end | |||
|id=chr1:53556610..53556625,- | |||
|ontology_enrichment_celltype=CL:0000625!4.49e-08!11;CL:1000306!1.52e-07!4;CL:0002547!1.52e-07!4;CL:0000623!5.56e-07!3;CL:0000825!5.56e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0002195;3.73e-14;2!CL:0002571;3.73e-14;2!CL:0000623;7.51e-10;3!CL:0000625;2.79e-09;11!CL:0000767;3.68e-09;3!CL:0002379;8.27e-08;1!CL:0002581;1.74e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002195,3.50e-14,2;CL:0002571,3.50e-14,2;CL:0000623,7.36e-10,3;CL:0000825,7.36e-10,3;CL:0000625,2.64e-09,11;CL:0000767,5.13e-09,3;CL:0002379,8.84e-08,1;CL:0002581,1.07e-07,1 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3620;8.27e-08;1!DOID:3565;8.27e-08;1!DOID:2513;1.74e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3620,8.84e-08,1;DOID:3565,8.84e-08,1;DOID:2513,1.91e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0007023!1.47e-24!115;UBERON:0001049!1.31e-15!57;UBERON:0005068!1.31e-15!57;UBERON:0006241!1.31e-15!57;UBERON:0007135!1.31e-15!57;UBERON:0002616!2.26e-12!59;UBERON:0002298!1.71e-11!8;UBERON:0000955!2.50e-10!69;UBERON:0006238!2.50e-10!69;UBERON:0003075!7.28e-10!86;UBERON:0007284!7.28e-10!86;UBERON:0001017!2.45e-09!82;UBERON:0003080!3.30e-09!42;UBERON:0002346!4.18e-09!90;UBERON:0005743!1.35e-08!86;UBERON:0003076!1.92e-08!15;UBERON:0003057!1.92e-08!15;UBERON:0000025!2.94e-08!194;UBERON:0002780!3.16e-08!41;UBERON:0001890!3.16e-08!41;UBERON:0006240!3.16e-08!41;UBERON:0002020!3.50e-08!34;UBERON:0003528!3.50e-08!34;UBERON:0000073!6.24e-08!94;UBERON:0001016!6.24e-08!94;UBERON:0000415!1.52e-07!4;UBERON:0007240!1.52e-07!4;UBERON:0005742!1.52e-07!4;UBERON:0005734!1.52e-07!4;UBERON:0004664!1.52e-07!4;UBERON:0004663!1.52e-07!4;UBERON:0002791!3.64e-07!33;UBERON:0001893!7.18e-07!34;UBERON:0004733!7.49e-07!12;UBERON:0002028!7.49e-07!12;UBERON:0007277!7.49e-07!12 | |||
|ontology_enrichment_uberon_v019=UBERON:0002038;1.74e-07;1!UBERON:0002135;1.74e-07;1!UBERON:0009661;1.74e-07;1!UBERON:0002950;1.74e-07;1!UBERON:0001891;1.74e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002135,1.30e-07,1;UBERON:0002038,3.17e-07,1;UBERON:0009661,3.17e-07,1;UBERON:0002950,3.17e-07,1;UBERON:0001891,3.17e-07,1;UBERON:0009616,3.17e-07,1;UBERON:0010286,3.17e-07,1 | |||
|phase1_expression=1.09007027562334,0.428201047781966,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15148819429164,1.08371286321253,0,0,0,0,0,0,0.553995408531877,2.4065333696417,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.334231370655521,0,0,0,0.128091319725675,0,0,0,0,0.14828656316206,0,0,0,0,0,0,0,0,0,1.05402583354441,0.639933055772092,1.24930726552346,0.236777252044017,0,1.81446068902259,3.20928234940209,0.289648807765598,0,0,0.12786256184353,0,0,0,0,0,0,0,0,0.392937226493138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0.264818361626438,1.14734648299525,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18611685633159,0,0,0,0.0920498986422993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.28933980974443,0,0,0,3.909311436168,0.791951872933429,0,0,0,0,0,0,0,0,0,0,0,0,0,5.71389204585589,9.9188684435378,0.256686072559497,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413536052245775,0.862856803274467,1.28073069364133,0,0,0,0.248107807818777,0,0,0,0,0.160853921143607,1.48418066444991,0,0.177561725313127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.48763373908959,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,1.31717957183961,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0.476463550915578,0,0,1.08006287447623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439524537815682,0,0,0,0,0,0,0,0.984685914873589,0,0,0,0.796991953004279,0,0,0,0,1.24415835064723,0,0,0,0.197286811273867,0,0,0,0,0,0,0.787139999965761,1.44999915086959,0,0,0,0,0.291604613383254,0,0,0.723578631752448,0,0.331737779793674,0.295547618953547,0,0,0,0,0,0,0.179515288819544,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.995261931078505,0.0884575645033392,0,0,0,0,0,0,0.234264445725339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0.0633107959558787,11.3419801986186,0,0.426905989478705,0,0.144090417154106,0,0,0,0,0,0,0,0,0,0,0.547621515567972,0,0,0,1.39641200636127,0.916641696046735,0,0,0.429226048136571,0,0,0,12.8145544480199,0,0,0,0,0,0,1.36203406111576,0,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0.714695326373367,0,0,0,0,0,0,0,0,0,0,0,0,3.04134984008187,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1251909307065,0.573409195690071,1.44207766997908,0.310482014706917,0,0.124980407962107,0,0,2.11739237728355,0,0,0,0,0,0,0.251567901752575,0,0.915360273587694,0.604923695052956,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.493765180635,0,0,0,0.308801447160972,0,0,0,0,0,0,0,1.24432592536558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.636008701306837,0,0,0,0,0.256916900385838,0,0.638535436228605,0,0,0,0.161475645631851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.620060389503552,0,0,0,0,0,0,0,1.00885116665647,0,0,0,0,0.171488009437418,0.135939465953663,0.131545547125698,0,0,0,0,5.0448989396482,0,0,0,0,0,0.116241425368125,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307988420568741,0,0,0,0,0,0,0,0,0.771741581079447,0,0,0,0,0.196308467114945,0.297046400327086,0,0,0,0,0,0,0,0,0,0,1.00337708206016,0,0.135982980381829,0,0,0,0,0,0,0,0,0.101988829741982,0,0,0,0,0,0,0.310298987585686,0.852935927603924,0,0.0645889098360061,0,0,0,0.202117188958219,1.74173398317569,0.342233301085281,0,0.215166616178029,0,0,0,0,0,0,0,0,0,0.201273793591026,0 | |phase1_expression=1.09007027562334,0.428201047781966,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15148819429164,1.08371286321253,0,0,0,0,0,0,0.553995408531877,2.4065333696417,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.334231370655521,0,0,0,0.128091319725675,0,0,0,0,0.14828656316206,0,0,0,0,0,0,0,0,0,1.05402583354441,0.639933055772092,1.24930726552346,0.236777252044017,0,1.81446068902259,3.20928234940209,0.289648807765598,0,0,0.12786256184353,0,0,0,0,0,0,0,0,0.392937226493138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0.264818361626438,1.14734648299525,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18611685633159,0,0,0,0.0920498986422993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.28933980974443,0,0,0,3.909311436168,0.791951872933429,0,0,0,0,0,0,0,0,0,0,0,0,0,5.71389204585589,9.9188684435378,0.256686072559497,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413536052245775,0.862856803274467,1.28073069364133,0,0,0,0.248107807818777,0,0,0,0,0.160853921143607,1.48418066444991,0,0.177561725313127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.48763373908959,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,1.31717957183961,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0.476463550915578,0,0,1.08006287447623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439524537815682,0,0,0,0,0,0,0,0.984685914873589,0,0,0,0.796991953004279,0,0,0,0,1.24415835064723,0,0,0,0.197286811273867,0,0,0,0,0,0,0.787139999965761,1.44999915086959,0,0,0,0,0.291604613383254,0,0,0.723578631752448,0,0.331737779793674,0.295547618953547,0,0,0,0,0,0,0.179515288819544,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.995261931078505,0.0884575645033392,0,0,0,0,0,0,0.234264445725339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0.0633107959558787,11.3419801986186,0,0.426905989478705,0,0.144090417154106,0,0,0,0,0,0,0,0,0,0,0.547621515567972,0,0,0,1.39641200636127,0.916641696046735,0,0,0.429226048136571,0,0,0,12.8145544480199,0,0,0,0,0,0,1.36203406111576,0,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0.714695326373367,0,0,0,0,0,0,0,0,0,0,0,0,3.04134984008187,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1251909307065,0.573409195690071,1.44207766997908,0.310482014706917,0,0.124980407962107,0,0,2.11739237728355,0,0,0,0,0,0,0.251567901752575,0,0.915360273587694,0.604923695052956,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.493765180635,0,0,0,0.308801447160972,0,0,0,0,0,0,0,1.24432592536558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.636008701306837,0,0,0,0,0.256916900385838,0,0.638535436228605,0,0,0,0.161475645631851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.620060389503552,0,0,0,0,0,0,0,1.00885116665647,0,0,0,0,0.171488009437418,0.135939465953663,0.131545547125698,0,0,0,0,5.0448989396482,0,0,0,0,0,0.116241425368125,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307988420568741,0,0,0,0,0,0,0,0,0.771741581079447,0,0,0,0,0.196308467114945,0.297046400327086,0,0,0,0,0,0,0,0,0,0,1.00337708206016,0,0.135982980381829,0,0,0,0,0,0,0,0,0.101988829741982,0,0,0,0,0,0,0.310298987585686,0.852935927603924,0,0.0645889098360061,0,0,0,0.202117188958219,1.74173398317569,0.342233301085281,0,0.215166616178029,0,0,0,0,0,0,0,0,0,0.201273793591026,0 | ||
|short_description=p4@SLC1A7 | |||
}} | }} |
Latest revision as of 13:27, 18 September 2015
Short description: | p4@SLC1A7 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SLC1A7_5end |
Coexpression cluster: | C3986_hepatoblastoma_gall_Mesenchymal_Natural_locus_tongue_mesothelioma |
Association with transcript: | 28bp_to_ENST00000488036, uc001cux.2_5end |
EntrezGene: | SLC1A7 |
HGNC: | 10945 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatic stem cell | 3.50e-14 | 2 |
hepatic mesenchymal stem cell | 3.50e-14 | 2 |
natural killer cell | 7.36e-10 | 3 |
pro-NK cell | 7.36e-10 | 3 |
CD8-positive, alpha-beta T cell | 2.64e-09 | 11 |
basophil | 5.13e-09 | 3 |
meningothelial cell | 8.84e-08 | 1 |
perirenal preadipocyte | 1.07e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
mitral valve | 1.30e-07 | 1 |
substantia nigra | 3.17e-07 | 1 |
midbrain nucleus | 3.17e-07 | 1 |
regional part of midbrain | 3.17e-07 | 1 |
midbrain | 3.17e-07 | 1 |
presumptive midbrain | 3.17e-07 | 1 |
midbrain neural tube | 3.17e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
central nervous system cancer | 8.84e-08 | 1 |
meningioma | 8.84e-08 | 1 |
basal cell carcinoma | 1.91e-07 | 1 |