FFCP PHASE1:Hg19::chr12:48164790..48164808,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10411 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16629 | |||
|TSSclassifier=strong | |||
|UniProt=E7EQC8 | |||
|association_with_transcript=8bp_to_ENST00000549151_5end | |||
|cluster_id=chr12:48164790..48164808,- | |||
|coexpression_cluster_id=C2207 | |||
|description=CAGE_peak_16_at_RAPGEF3_5end | |||
|id=chr12:48164790..48164808,- | |||
|ontology_enrichment_celltype=CL:0000575!1.80e-09!2 | |||
|ontology_enrichment_celltype_v019=CL:0000575;6.36e-57;2!CL:0002159;4.56e-09;14!CL:0000333;5.38e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000575,1.13e-56,2;CL:0002159,4.95e-09,14 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:169!1.16e-10!6;DOID:171!1.12e-09!10 | |||
|ontology_enrichment_disease_v019=DOID:3193;1.54e-15;2!DOID:962;1.54e-15;2!DOID:1192;8.17e-11;3 | |||
|ontology_enrichment_disease_v019_2=DOID:3193,1.54e-15,2;DOID:962,1.54e-15,2;DOID:1192,8.17e-11,3 | |||
|ontology_enrichment_uberon=UBERON:0000007!6.22e-09!2;UBERON:0000013!1.51e-07!5;UBERON:0002410!1.51e-07!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0000964;4.21e-29;4!UBERON:0010409;4.21e-29;4!UBERON:0003714;1.54e-15;2!UBERON:0010313;2.66e-12;10!UBERON:0001801;4.56e-09;14!UBERON:0000013;5.38e-07;5!UBERON:0002410;5.38e-07;5!UBERON:0000019;6.38e-07;19!UBERON:0000047;6.38e-07;19!UBERON:0004088;6.38e-07;19!UBERON:0010230;6.38e-07;19!UBERON:0000945;6.39e-07;5!UBERON:0010039;6.39e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000964,5.61e-29,4;UBERON:0010409,5.61e-29,4;UBERON:0004348,5.61e-29,4;UBERON:0005427,5.61e-29,4;UBERON:0003714,1.54e-15,2;UBERON:0010313,2.98e-12,10;UBERON:0002342,2.98e-12,10;UBERON:0005062,2.98e-12,10;UBERON:0001801,4.95e-09,14;UBERON:0000013,5.38e-07,5;UBERON:0002410,5.38e-07,5 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0.0654895377488563,2.18577172975525,1.11235332835329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168584690078102,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234817388471643,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141405431953713,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0.427296284509893,0.962479855263359,0,0,0,0,0,0,0,0.211673582723883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,1.65471377237555,0,0,0.868124974666461,0,0,0,0,0,0,0.32681539055697,0.83654246567162,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189753732724185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394584402849391,0,0,0.126373159256976,0.751617097072463,0,0,0,0,0,0.569219092059585,0,0,0.0979923974143777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19980960958213,0,1.25990255782507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.788057072991982,2.57027481861491,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0,0,0,0,0.213574825135389,0.157204305099666,0.828478110694391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276697269872462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308801447160972,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127894371303652,0,0,0.109209638192014,0,0,0.619678821295011,2.23457967189298,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225630985047772,0,0,0,0,0,0.0675375846183947,0,0,0,0,0,0,0,0,0,0,0.606965604236632,0.227662191351298,0,0,0,0,0,0,0,0,0,0,0.913158720509496,0,0,0,0,5.69582984303814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11294608203896,0,0,0,0,0,0,0.471353094203252,0,0,0.4226557275834,0,0,0.0644578879735772,0,0,0,0,0,0,0,0,0.0679914901909147,0,0,0,0,0,0,0,0,0.101988829741982,0,0,0,0.0757786982182394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0898252021065869,0,0,0,0,0,0 | |||
|short_description=p16@RAPGEF3 | |||
}} |
Latest revision as of 13:09, 18 September 2015
Short description: | p16@RAPGEF3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_16_at_RAPGEF3_5end |
Coexpression cluster: | C2207_rhabdomyosarcoma_Corneal_bronchogenic_kidney_cervical_neuroepithelioma_neuroectodermal |
Association with transcript: | 8bp_to_ENST00000549151_5end |
EntrezGene: | RAPGEF3 |
HGNC: | 16629 |
UniProt: | E7EQC8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
corneal epithelial cell | 1.13e-56 | 2 |
general ecto-epithelial cell | 4.95e-09 | 14 |
Ontology term | p-value | n |
---|---|---|
cornea | 5.61e-29 | 4 |
eye surface | 5.61e-29 | 4 |
optic eminence | 5.61e-29 | 4 |
corneal primordium | 5.61e-29 | 4 |
neural tissue | 1.54e-15 | 2 |
neural crest-derived structure | 2.98e-12 | 10 |
neural crest | 2.98e-12 | 10 |
neural fold | 2.98e-12 | 10 |
anterior segment of eyeball | 4.95e-09 | 14 |
sympathetic nervous system | 5.38e-07 | 5 |
autonomic nervous system | 5.38e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
peripheral nerve sheath neoplasm | 1.54e-15 | 2 |
neurofibroma | 1.54e-15 | 2 |
peripheral nervous system neoplasm | 8.17e-11 | 3 |