FFCP PHASE1:Hg19::chr11:59522582..59522595,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6809 | |EntrezGene=6809 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11438 | |HGNC=11438 | ||
|TSSclassifier=strong | |||
|UniProt=Q13277,B4DME0,Q53YE2 | |UniProt=Q13277,B4DME0,Q53YE2 | ||
|association_with_transcript=50bp_to_ENST00000337979,ENST00000535361,NM_001178040,NM_004177_5end | |association_with_transcript=50bp_to_ENST00000337979,ENST00000535361,NM_001178040,NM_004177_5end | ||
|cluster_id=chr11:59522582..59522595,+ | |||
|coexpression_cluster_id=C26 | |coexpression_cluster_id=C26 | ||
|description=CAGE_peak_5_at_STX3_5end | |description=CAGE_peak_5_at_STX3_5end | ||
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|ontology_enrichment_celltype=CL:0000766!2.36e-21!76;CL:0002057!3.90e-19!42;CL:0000860!4.52e-18!45;CL:0000557!3.04e-17!71;CL:0000839!6.66e-17!70;CL:0002194!1.18e-15!63;CL:0000576!1.18e-15!63;CL:0000040!1.18e-15!63;CL:0000559!1.18e-15!63;CL:0002009!2.41e-15!65;CL:0000763!1.20e-12!112;CL:0000049!1.20e-12!112 | |ontology_enrichment_celltype=CL:0000766!2.36e-21!76;CL:0002057!3.90e-19!42;CL:0000860!4.52e-18!45;CL:0000557!3.04e-17!71;CL:0000839!6.66e-17!70;CL:0002194!1.18e-15!63;CL:0000576!1.18e-15!63;CL:0000040!1.18e-15!63;CL:0000559!1.18e-15!63;CL:0002009!2.41e-15!65;CL:0000763!1.20e-12!112;CL:0000049!1.20e-12!112 | ||
|ontology_enrichment_celltype_v019=CL:0000860;9.67e-45;33!CL:0002057;9.67e-45;33!CL:0000473;1.29e-34;39!CL:0000234;1.29e-34;39!CL:0000576;2.14e-21;48!CL:0000766;3.20e-18;69!CL:0000763;3.16e-10;100!CL:0000094;1.26e-08;8!CL:0000097;5.14e-07;5!CL:0002543;5.72e-07;6!CL:0000775;5.74e-07;3 | |ontology_enrichment_celltype_v019=CL:0000860;9.67e-45;33!CL:0002057;9.67e-45;33!CL:0000473;1.29e-34;39!CL:0000234;1.29e-34;39!CL:0000576;2.14e-21;48!CL:0000766;3.20e-18;69!CL:0000763;3.16e-10;100!CL:0000094;1.26e-08;8!CL:0000097;5.14e-07;5!CL:0002543;5.72e-07;6!CL:0000775;5.74e-07;3 | ||
|ontology_enrichment_celltype_v019_2=CL:0000766,9.40e-40,72;CL:0000860,3.17e-36,42;CL:0002057,3.17e-36,42;CL:0000473,7.61e-35,48;CL:0000234,7.61e-35,48;CL:0000839,3.65e-31,66;CL:0000557,1.59e-30,67;CL:0002194,1.70e-27,59;CL:0000576,1.70e-27,59;CL:0000040,1.70e-27,59;CL:0000559,1.70e-27,59;CL:0002009,2.96e-26,61;CL:0000763,2.71e-23,108;CL:0000049,2.71e-23,108;CL:0000738,8.16e-15,136;CL:0002031,4.12e-12,120;CL:0002032,2.13e-11,161;CL:0000837,2.13e-11,161;CL:0000037,1.99e-10,168;CL:0002087,2.16e-09,115;CL:0000988,2.62e-09,177;CL:0000094,8.49e-09,8;CL:0002543,4.39e-07,6;CL:0000775,5.01e-07,3;CL:0000097,5.07e-07,5;CL:0002028,5.07e-07,5 | |||
|ontology_enrichment_development_v019=CL:0002057;1.73e-27;42!CL:0000049;3.71e-08;108 | |ontology_enrichment_development_v019=CL:0002057;1.73e-27;42!CL:0000049;3.71e-08;108 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!3.89e-14!102;UBERON:0003061!3.89e-14!102;UBERON:0002371!3.93e-14!80;UBERON:0002193!5.31e-14!112;UBERON:0001474!1.63e-13!86;UBERON:0004765!1.37e-10!101;UBERON:0001434!1.37e-10!101;UBERON:0002405!1.18e-09!115 | |ontology_enrichment_uberon=UBERON:0002390!3.89e-14!102;UBERON:0003061!3.89e-14!102;UBERON:0002371!3.93e-14!80;UBERON:0002193!5.31e-14!112;UBERON:0001474!1.63e-13!86;UBERON:0004765!1.37e-10!101;UBERON:0001434!1.37e-10!101;UBERON:0002405!1.18e-09!115 | ||
|ontology_enrichment_uberon_v019= | |ontology_enrichment_uberon_v019= | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,5.40e-27,76;UBERON:0002193,3.20e-25,108;UBERON:0002390,7.35e-25,98;UBERON:0003061,7.35e-25,98;UBERON:0001474,3.77e-24,82;UBERON:0002405,6.46e-24,93;UBERON:0004765,5.82e-21,90;UBERON:0001434,1.03e-17,100;UBERON:0003081,1.93e-13,203;UBERON:0000926,3.12e-09,315;UBERON:0004120,3.12e-09,315;UBERON:0006603,3.12e-09,315;UBERON:0002204,1.80e-07,167 | |||
|phase1_expression=0.54503513781167,3.21150785836475,0.422863212287913,2.00146596706261,0,0,0,0,0,0,0,0,0.263766978228454,0,0,0.672325146451775,0,0,0.487932798790507,0.123121058076788,0,0,0,0,0,0,0,0,1.57345710739562,0,0.464448369948228,0,0,0,0,0,0.293600439334847,0.553995408531877,0.802177789880567,0.434021741431704,0.447830948479849,0.32389366601898,1.54545340580512,4.21654892460738,6.42389104270976,6.0646015296954,6.74044207026485,9.86802931252382,6.19412741790207,10.6446185159196,11.7833925003386,8.27687804610048,4.13694816883942,5.16387746867061,5.41705946377367,4.70605848856512,6.5497476013883,4.94391665779186,4.28517449319264,8.66508373105453,5.11469700639233,10.8850929061616,8.57693727773017,9.37694451171927,2.61188314765726,9.64554881974938,7.4738669879469,11.8086872670669,16.1659704710262,11.2938199246661,3.63239701580021,8.10210799172642,4.1140110367315,0.633765858935825,0.212604299965044,0,0.673971786878971,0.450530678524519,0.964353520182481,0,0,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222820913770347,0,0,0,0.128091319725675,0.390178042679635,1.31550323682941,0.829050053357545,0,0,0,0,0.339928028092699,0,0,0,0,0,0,0,0.127986611154418,0,0.236777252044017,0,0,0.802320587350522,0,0,0,0,0.361439152384566,0,0,0,0,0.189069634328136,0.221729397462564,0,0.785874452986276,0,0,0.649094787309367,0,0.531831842075461,0.238490624305342,0,0,0.39752481473341,0,0,0.56530794192401,1.25849830862972,0,0.835979866147242,2.58416759169329,2.84613010149368,1.33888245105868,0.402829317109147,0.760272105718513,0.24406205754817,0.735326160691737,0,1.51809538082936,2.46982309888787,1.23872628531654,3.06633274931766,0.949265659568129,1.28241220751285,6.58902087180316,15.511210565933,0,0,0,0.529636723252875,0,0,0,0,0.24666754841716,0.311211035399766,0.67355336034844,0.490385709340376,0.151357427644931,0,0,0.312160076830321,0,0,0.23486899728753,0.161872944368132,0.140450806702248,0,0.245668634623536,0.103325781175765,0,0.494533858557114,0,0,0.168336113954066,0,0,0,0,0.45071417671979,0.113432183160021,0.717558542755448,0.213557388818567,0.423863802319124,0.900273288253207,0.206105058476878,0.515281080091258,0.18611685633159,0.337552664482532,0.194874010322397,0.252433774244115,0.184099797284599,0,1.06502877754984,0.10075209822764,0,0.386521706326594,0.545492241181669,0.573609190778008,0.243947412259191,0.265059536642971,0.464775771478074,0.829288440122964,0.252320850875628,1.09493207722749,0,0.643240938192885,0,0.464367928031979,0.721879481669586,0.118306800039844,0,0.241011029883482,0,0,0,0,0.196221465125346,0,2.21446636387394,0,0,0,0,0,0,0,1.96781501668982,0.171567810298526,0.329250856225877,0,0,0,0.325808305310325,0,0,0,0,0.288732895522148,0.462985512576611,0.380508304469197,0,0,0.738651018262192,0.234004265139238,1.48631162288728,0.93733833986777,0.503946384596579,0.425325291727159,0,0,0,0.492663237895943,3.78608266256872,9.32976519933474,10.9531164596891,10.0993946741104,0.380987365753014,1.52795370223311,0,0,0.514137463516618,0.901029173531752,1.71495859578347,0.224262168690721,0,0.07333828582095,0.517086863031111,0,0,0,0,0,0,0,0,0,0,0,0.355391948742546,0,1.20575750823834,0.871533458600294,0.499864955910285,2.43247561282381,0,0,0.479249710983165,0,0,1.01346914667305,0.205476322550383,0.358121926479791,0.784596007954691,0,0,0.128343036279748,0.508189248444927,1.30139853857622,0.773288812777695,0.335032530668698,0.637938751653163,6.74106321552464,11.966458368161,4.97298616123243,0,0,0,0.207970861530807,0.713715955188647,0.157702415033935,0.117141414992713,0,0,1.03473071292505,0.664225598535437,0.184369168541703,0.347534457872331,0.195801157462741,0,0.206768026122887,0.647142602455851,0.320182673410333,0,0,0,0.248107807818777,0.153461973288062,1.68396056659844,0.128139149255701,0,0.160853921143607,1.48418066444991,0.154209693802656,0.355123450626254,0.164254312027618,0.519254429183621,0,1.45031339509947,1.00253235151642,0,0,0,0,0.902399225814824,0.539107359730903,0,0,0,0,1.02056223165909,0.431831832204279,0,0,0,0,0,0,0,0,0.256450125116389,0.984043937099117,0.650756789328606,0.721287081534056,0.0915694648183434,0,0,0,0,0,0,0.15350367472613,0.137836572484531,0,0,0.0852266274161009,0,0.330569830721956,0,0.127612712494584,0,0,0,0,0,0,0,0,0.286249773483982,0.744316738719335,0.632758849437452,0.762520775695299,0.511795582622668,0.42793898803392,0,0,0.719489830333259,0,0.353437207037059,0.202182481573316,0,0.421258456238981,0,0,1.05650146756755,0,0,0,0,0,0,0,0.655894752046633,0.202910376962704,0,0,0,0.0982490410131212,0.35667105148125,0.354761064070598,0,0,1.13841952129715,0,0,0,0,0.376575203107117,0,0,0,0.229723400206959,0.507447609232169,2.29391162142713,2.84823593587081,2.1440859791201,0.822724546172388,0.648473311192717,1.62009431171434,3.17250070517708,0.213648142254946,0,0.735120647943095,0,0,0,0.159426272728822,0,0,0.211673582723883,0.649243880549111,0,0,0,0,0.338583555603207,0,0,0,2.74804275804612,0.307240764308458,0,0.500547425135725,0.19538809540204,0.278406173895242,0,0,0.33307196799782,0,0.5614216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| ||
|short_description=p5@STX3 | |short_description=p5@STX3 | ||
}} | }} |
Latest revision as of 12:40, 18 September 2015
Short description: | p5@STX3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_STX3_5end |
Coexpression cluster: | C26_Eosinophils_Neutrophils_CD14_CD14CD16_Basophils_Monocytederived_Whole |
Association with transcript: | 50bp_to_ENST00000337979, ENST00000535361, NM_001178040, NM_004177_5end |
EntrezGene: | STX3 |
HGNC: | 11438 |
UniProt: | Q13277B4DME0Q53YE2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 9.40e-40 | 72 |
classical monocyte | 3.17e-36 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.17e-36 | 42 |
defensive cell | 7.61e-35 | 48 |
phagocyte | 7.61e-35 | 48 |
myeloid lineage restricted progenitor cell | 3.65e-31 | 66 |
granulocyte monocyte progenitor cell | 1.59e-30 | 67 |
monopoietic cell | 1.70e-27 | 59 |
monocyte | 1.70e-27 | 59 |
monoblast | 1.70e-27 | 59 |
promonocyte | 1.70e-27 | 59 |
macrophage dendritic cell progenitor | 2.96e-26 | 61 |
myeloid cell | 2.71e-23 | 108 |
common myeloid progenitor | 2.71e-23 | 108 |
leukocyte | 8.16e-15 | 136 |
hematopoietic lineage restricted progenitor cell | 4.12e-12 | 120 |
hematopoietic oligopotent progenitor cell | 2.13e-11 | 161 |
hematopoietic multipotent progenitor cell | 2.13e-11 | 161 |
hematopoietic stem cell | 1.99e-10 | 168 |
nongranular leukocyte | 2.16e-09 | 115 |
hematopoietic cell | 2.62e-09 | 177 |
granulocyte | 8.49e-09 | 8 |
vein endothelial cell | 4.39e-07 | 6 |
neutrophil | 5.01e-07 | 3 |
mast cell | 5.07e-07 | 5 |
basophil mast progenitor cell | 5.07e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 5.40e-27 | 76 |
hemolymphoid system | 3.20e-25 | 108 |
hematopoietic system | 7.35e-25 | 98 |
blood island | 7.35e-25 | 98 |
bone element | 3.77e-24 | 82 |
immune system | 6.46e-24 | 93 |
skeletal element | 5.82e-21 | 90 |
skeletal system | 1.03e-17 | 100 |
lateral plate mesoderm | 1.93e-13 | 203 |
mesoderm | 3.12e-09 | 315 |
mesoderm-derived structure | 3.12e-09 | 315 |
presumptive mesoderm | 3.12e-09 | 315 |
musculoskeletal system | 1.80e-07 | 167 |