FFCP PHASE1:Hg19::chr12:47628787..47628808,+: Difference between revisions
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|id=chr12:47628787..47628808,+
|short_description=p10@FAM113B
|description=CAGE_peak_10_at_FAM113B_5end
|association_with_transcript=-398bp_to_ENST00000330951_5end
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=91523 | |EntrezGene=91523 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=28255 | |HGNC=28255 | ||
|TSSclassifier=strong | |||
|UniProt=C9J074 | |UniProt=C9J074 | ||
|association_with_transcript=-398bp_to_ENST00000330951_5end | |||
|cluster_id=chr12:47628787..47628808,+ | |||
|coexpression_cluster_id=C330 | |||
|description=CAGE_peak_10_at_FAM113B_5end | |||
|id=chr12:47628787..47628808,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000322;6.73e-11;3!CL:0000082;5.75e-07;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000322,6.73e-11,3;CL:0000082,5.84e-07,19;CL:0002076,8.88e-07,42 | |||
|ontology_enrichment_development_v019=UBERON:0008814;1.33e-15;2!UBERON:0010056;1.33e-15;2 | |||
|ontology_enrichment_disease=DOID:1749!5.04e-25!14;DOID:305!1.33e-12!106;DOID:0050687!1.34e-08!143;DOID:3111!1.48e-08!1;DOID:3603!1.48e-08!1 | |||
|ontology_enrichment_disease_v019=DOID:1749;6.68e-19;14!DOID:1325;3.02e-17;7!DOID:3904;3.02e-17;7!DOID:3910;1.15e-15;2!DOID:1324;1.39e-08;15!DOID:5093;2.18e-08;4!DOID:1612;2.18e-08;4!DOID:0050615;4.19e-08;16!DOID:3908;4.79e-07;5 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,6.89e-19,14;DOID:1325,3.15e-17,7;DOID:3904,3.15e-17,7;DOID:3910,1.15e-15,2;DOID:305,2.72e-13,106;DOID:0050687,6.71e-10,143;DOID:1324,1.42e-08,15;DOID:5093,2.11e-08,4;DOID:1612,2.11e-08,4;DOID:0050615,4.26e-08,16;DOID:7,3.17e-07,39;DOID:3908,4.79e-07,5 | |||
|ontology_enrichment_uberon=UBERON:0003343!2.46e-17!4;UBERON:0004785!2.46e-17!4;UBERON:0003729!5.58e-14!5;UBERON:0000344!4.95e-10!12;UBERON:0000997!9.46e-09!1;UBERON:0005056!9.46e-09!1;UBERON:0000974!3.18e-07!10 | |||
|ontology_enrichment_uberon_v019=UBERON:0003343;3.92e-29;4!UBERON:0004785;3.92e-29;4!UBERON:0000974;8.23e-20;6!UBERON:0004903;1.15e-15;2!UBERON:0002173;1.15e-15;2!UBERON:0002186;1.15e-15;2!UBERON:0004821;6.73e-11;3!UBERON:0007499;6.73e-11;3!UBERON:0003215;6.73e-11;3!UBERON:0010368;6.73e-11;3!UBERON:0009911;6.73e-11;3!UBERON:0002299;6.73e-11;3!UBERON:0006524;6.73e-11;3!UBERON:0008874;6.73e-11;3!UBERON:0002169;6.73e-11;3!UBERON:0004894;6.73e-11;3!UBERON:0001723;7.42e-11;3!UBERON:0001033;7.42e-11;3!UBERON:0003729;1.06e-09;13!UBERON:0009856;1.70e-08;4!UBERON:0004802;5.75e-07;19!UBERON:0000115;5.75e-07;19!UBERON:0000161;6.29e-07;19!UBERON:0000166;6.29e-07;19 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003343,4.21e-29,4;UBERON:0004785,4.21e-29,4;UBERON:0004903,1.15e-15,2;UBERON:0002173,1.15e-15,2;UBERON:0002186,1.15e-15,2;UBERON:0000974,2.66e-12,10;UBERON:0004821,6.73e-11,3;UBERON:0003215,6.73e-11,3;UBERON:0010368,6.73e-11,3;UBERON:0009911,6.73e-11,3;UBERON:0002299,6.73e-11,3;UBERON:0006524,6.73e-11,3;UBERON:0008874,6.73e-11,3;UBERON:0002169,6.73e-11,3;UBERON:0004894,6.73e-11,3;UBERON:0001723,7.42e-11,3;UBERON:0001033,7.42e-11,3;UBERON:0010056,7.42e-11,3;UBERON:0003729,1.08e-09,13;UBERON:0004802,5.84e-07,19;UBERON:0000115,5.84e-07,19 | |||
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|short_description=p10@FAM113B | |||
}} | }} |
Latest revision as of 12:33, 18 September 2015
Short description: | p10@FAM113B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_10_at_FAM113B_5end |
Coexpression cluster: | C330_bronchioalveolar_oral_signet_embryonic_lymphangiectasia_testis_adult |
Association with transcript: | -398bp_to_ENST00000330951_5end |
EntrezGene: | FAM113B |
HGNC: | 28255 |
UniProt: | C9J074 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pneumocyte | 6.73e-11 | 3 |
epithelial cell of lung | 5.84e-07 | 19 |
endo-epithelial cell | 8.88e-07 | 42 |
Ontology term | p-value | n |
---|---|---|
mucosa of oral region | 4.21e-29 | 4 |
respiratory system mucosa | 4.21e-29 | 4 |
bronchoalveolar duct junction | 1.15e-15 | 2 |
alveolar duct | 1.15e-15 | 2 |
bronchiole | 1.15e-15 | 2 |
neck | 2.66e-12 | 10 |
pulmonary alveolus epithelium | 6.73e-11 | 3 |
alveolus | 6.73e-11 | 3 |
pulmonary lobule | 6.73e-11 | 3 |
lobule | 6.73e-11 | 3 |
alveolus of lung | 6.73e-11 | 3 |
alveolar system | 6.73e-11 | 3 |
pulmonary acinus | 6.73e-11 | 3 |
alveolar sac | 6.73e-11 | 3 |
alveolar wall | 6.73e-11 | 3 |
tongue | 7.42e-11 | 3 |
gustatory system | 7.42e-11 | 3 |
future tongue | 7.42e-11 | 3 |
mouth mucosa | 1.08e-09 | 13 |
respiratory tract epithelium | 5.84e-07 | 19 |
lung epithelium | 5.84e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 6.89e-19 | 14 |
bronchus cancer | 3.15e-17 | 7 |
bronchogenic carcinoma | 3.15e-17 | 7 |
lung adenocarcinoma | 1.15e-15 | 2 |
carcinoma | 2.72e-13 | 106 |
cell type cancer | 6.71e-10 | 143 |
lung cancer | 1.42e-08 | 15 |
thoracic cancer | 2.11e-08 | 4 |
breast cancer | 2.11e-08 | 4 |
respiratory system cancer | 4.26e-08 | 16 |
disease of anatomical entity | 3.17e-07 | 39 |
non-small cell lung carcinoma | 4.79e-07 | 5 |