FFCP PHASE1:Hg19::chr15:63414832..63414860,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr15:63414832..63414860,+
|short_description=p6@LACTB
|description=CAGE_peak_6_at_LACTB_5end
|association_with_transcript=50bp_to_ENST00000557972_5end
|Entrez...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=114294 | |EntrezGene=114294 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16468 | |HGNC=16468 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=50bp_to_ENST00000557972_5end | |||
|cluster_id=chr15:63414832..63414860,+ | |||
|coexpression_cluster_id=C143 | |||
|description=CAGE_peak_6_at_LACTB_5end | |||
|id=chr15:63414832..63414860,+ | |||
|ontology_enrichment_celltype=CL:0002009!3.98e-25!65;CL:0000557!5.77e-25!71;CL:0002057!2.32e-24!42;CL:0002194!4.81e-24!63;CL:0000576!4.81e-24!63;CL:0000040!4.81e-24!63;CL:0000559!4.81e-24!63;CL:0000839!3.88e-23!70;CL:0000860!6.44e-23!45;CL:0000766!1.06e-22!76;CL:0000763!2.32e-13!112;CL:0000049!2.32e-13!112;CL:0002031!1.10e-10!124;CL:0000738!4.10e-09!140;CL:0002087!1.01e-08!119 | |||
|ontology_enrichment_celltype_v019=CL:0000860;3.59e-70;33!CL:0002057;3.59e-70;33!CL:0000473;1.23e-65;39!CL:0000234;1.23e-65;39!CL:0000576;2.84e-35;48!CL:0000766;1.85e-26;69!CL:0000763;2.41e-14;100!CL:0000235;1.55e-12;6!CL:0002087;6.49e-09;104!CL:0000738;1.58e-08;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,9.43e-79,48;CL:0000234,9.43e-79,48;CL:0000860,2.36e-67,42;CL:0002057,2.36e-67,42;CL:0002194,1.83e-64,59;CL:0000576,1.83e-64,59;CL:0000040,1.83e-64,59;CL:0000559,1.83e-64,59;CL:0002009,4.64e-62,61;CL:0000766,7.86e-61,72;CL:0000839,6.81e-60,66;CL:0000557,7.32e-59,67;CL:0000763,3.09e-37,108;CL:0000049,3.09e-37,108;CL:0002031,1.89e-30,120;CL:0002087,2.22e-30,115;CL:0000738,3.63e-29,136;CL:0002032,4.94e-23,161;CL:0000837,4.94e-23,161;CL:0000037,1.21e-21,168;CL:0000988,3.14e-21,177;CL:0000235,2.10e-12,6;CL:0000134,9.36e-10,354;CL:0002320,2.39e-09,361;CL:0000048,4.22e-09,427;CL:0000723,8.34e-09,433;CL:0000219,1.55e-08,386;CL:0000034,2.01e-08,441 | |||
|ontology_enrichment_development_v019=CL:0002057;4.47e-49;42!CL:0000049;1.14e-13;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!7.22e-23!80;UBERON:0001474!1.25e-19!86;UBERON:0004765!2.65e-16!101;UBERON:0001434!2.65e-16!101;UBERON:0002390!2.80e-16!102;UBERON:0003061!2.80e-16!102;UBERON:0002193!6.29e-16!112;UBERON:0002405!2.22e-15!115;UBERON:0002204!5.23e-11!167;UBERON:0003081!2.02e-08!216 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,8.72e-51,76;UBERON:0001474,2.24e-46,82;UBERON:0002405,2.92e-42,93;UBERON:0004765,2.10e-41,90;UBERON:0002390,3.07e-37,98;UBERON:0003061,3.07e-37,98;UBERON:0001434,2.66e-36,100;UBERON:0002193,5.07e-35,108;UBERON:0002204,5.82e-23,167;UBERON:0003081,3.48e-19,203;UBERON:0000926,3.20e-12,315;UBERON:0004120,3.20e-12,315;UBERON:0006603,3.20e-12,315;UBERON:0002384,8.57e-09,371 | |||
|phase1_expression=0,0.642301571672949,0.281908808191942,2.00146596706261,1.34088328328186,0,0,0,0.261185628199839,0,0,0.218441372130172,0,0,0.662794751455832,2.01697543935533,1.20538905604795,0.730310090387373,0,0,0.408001382488506,0,0,0,0,0.61130724598361,0.246301768349837,0.314843125254717,0,0,0,0,0,0,0.0774672005803016,0,0,0,1.60435557976113,0,0.223915474239924,0,0.77272670290256,2.90796477559129,3.02300754951048,3.15359279544161,1.62700325833979,3.70051099219643,2.16794459626573,10.9323109082417,7.94098190240212,9.22280696565482,0.689491361473237,1.29096936716765,2.70852973188684,2.63539275359647,3.82068610080984,2.69668181334102,4.28517449319264,1.92557416245656,2.55734850319616,3.95821560224059,6.38283704389222,7.6720455095885,2.90209238628584,3.40431134814684,4.35975574296902,9.04495194924276,8.86520961314342,4.56096573880745,4.23779651843358,2.20966581592539,3.79754864929061,0.633765858935825,1.06302149982522,0.419317291016752,0.336985893439485,0.450530678524519,0.16072558669708,0.285012743741249,0.79566670879636,0.365328307529268,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.334372990781356,0,0,0,0.111410456885174,0,0,0,0.25618263945135,0,0,0,0.289803085735052,0,0,0,0,0,0,0,0,0,0.950452044448374,0.301150238155546,0.127986611154418,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0,0,0,0.0945348171640679,0,0.175669571386252,0.261958150995425,0,0,0.324547393654683,0.522389211897802,1.06366368415092,0,0,0,0.198762407366705,0,0,0.56530794192401,0,0,0,0.516833518338658,0,0,0.805658634218294,0,0.732186172644509,0.367663080345869,0,0.17859945656816,0,0.225222960966644,0,0,0.183201743930407,0,0,0,0,0.379891534993739,0.132409180813219,0.573673241497627,0.709336764396714,0,0,0.49333509683432,0,0.269421344139376,0.326923806226917,0,0.576175924479999,0,0,0,0.448346041655403,0,0,0.140450806702248,0,0.122834317311768,0.103325781175765,0,0.247266929278557,0,0,0,0,0,0,0,0.150238058906597,0.226864366320042,0.538168907066586,0.213557388818567,0.211931901159562,0.300091096084402,0.412210116953756,0,0,0,0,0,0,0.323292113637624,0.355009592516614,0,0,0.193260853163297,0,0,0.609868530647977,0.265059536642971,0,0.310983165046111,0,0,0,0.643240938192885,0,1.39310378409594,0.721879481669586,0.236613600079688,0.505754070234305,0,0.55146986366197,0.217879444092406,0,0.404493924480493,0.392442930250692,0,0,0,0.4115740113314,0,0,0.982827216677626,0,0,0.122988438543114,0.514703430895577,0.109750285408626,0,0.100528972411631,0,0,0,0,0,0,0.288732895522148,0.462985512576611,3.23432058798817,0,0,1.47730203652438,0.702012795417713,1.18904929830983,0,0.16798212819886,0.283550194484773,0.0895585227028483,0,0,0,0.176096868026452,0.414656231081544,0.576479813667846,1.2624243342638,0.063497894292169,0,0,1.71072446022705,0.514137463516618,0.901029173531752,0.285826432630578,0,0,0.07333828582095,0.129271715757778,0,1.690605505112,0.797814349754612,0,0.257207374262142,0,0.266422179016099,0.285955987316295,0,0,0.325736184293735,0,0,0.301439377059586,0.871533458600294,1.29964888536674,1.2162378064119,1.50677127429638,16.8667151586425,0,1.14861935834114,0,0.144781306667579,0.410952645100767,0.179060963239896,0,0,0.215627574859517,0.128343036279748,0,0,0.773288812777695,0,0,2.24702107184155,8.97484377612075,0.414415513436035,0,0,0,0.207970861530807,0.713715955188647,0.473107245101804,0.117141414992713,0,0,0,0.664225598535437,0.553107505625109,0.0868836144680828,0,0,0,0,0,0.303127571446259,0,0,0.248107807818777,0.460385919864187,0,0.128139149255701,0,0.321707842287215,1.48418066444991,0.308419387605311,0.177561725313127,0.164254312027618,0,0.116210378459959,0,0,0.184161977871793,0.114814448164607,0.728364672026868,0.262248829918848,0,0.0770153371044148,0,0,0.105551628892876,0,0.170093705276516,1.0795795805107,0,0,0,0,0,0,0,0,0,0.328014645699706,0.325378394664303,0,0,0.082509499920588,0,0.650060246036521,0,0,0.462145851343933,0.460511024178389,0.137836572484531,0,0.145016693914229,0.170453254832202,0,0,0,0.127612712494584,0.10115778085555,0.929691098594572,0.31481234683064,0,0,0,0,0,0.286249773483982,0,0.316379424718726,0.190630193923825,0,0,0,0,0.179872457583315,0.274537029736055,0.235624804691373,0,1.58510321173008,0.421258456238981,0,1.46228093778771,0,0.136499911407986,0.565621727814851,0,0,0.66343897524122,0,0,0,0,0.30982349809975,0.281695602532241,0.573645408816206,0,0,0,0.211107635297664,0.658589785919804,0,0,0,0,0,0,0,0,0,0,0,0,0,0.476463550915578,0,0,0,0,0,0,0,0,0,0,0.478278818186467,0.199579371432817,0,0,0.649243880549111,0,0,0,0,0.169291777801603,0,0.201799707191048,0,0,0,0,0,0.19538809540204,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0.222617410045812,0,0,0.19924798825107,0.276283915531148,0,0.511343412510774,0,0,0.179736702294654,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0.254253650292766,0,0,0,0.173624994933292,0,0.241192877250816,0,0.331737779793674,0.295547618953547,0.219385397153973,0,0,0,0,0,0.179515288819544,0.325942115766024,0.31900115973192,0.0915975934018623,0.533034776018635,0,0.156980256395025,0,0.225595660617181,0,0.167821586975843,0,0,0.42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| ||
|short_description=p6@LACTB | |||
}} | }} |
Latest revision as of 12:07, 18 September 2015
Short description: | p6@LACTB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_LACTB_5end |
Coexpression cluster: | C143_Monocytederived_CD14_Macrophage_Dendritic_Basophils_CD14CD16_Osteoblast |
Association with transcript: | 50bp_to_ENST00000557972_5end |
EntrezGene: | LACTB |
HGNC: | 16468 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 9.43e-79 | 48 |
phagocyte | 9.43e-79 | 48 |
classical monocyte | 2.36e-67 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.36e-67 | 42 |
monopoietic cell | 1.83e-64 | 59 |
monocyte | 1.83e-64 | 59 |
monoblast | 1.83e-64 | 59 |
promonocyte | 1.83e-64 | 59 |
macrophage dendritic cell progenitor | 4.64e-62 | 61 |
myeloid leukocyte | 7.86e-61 | 72 |
myeloid lineage restricted progenitor cell | 6.81e-60 | 66 |
granulocyte monocyte progenitor cell | 7.32e-59 | 67 |
myeloid cell | 3.09e-37 | 108 |
common myeloid progenitor | 3.09e-37 | 108 |
hematopoietic lineage restricted progenitor cell | 1.89e-30 | 120 |
nongranular leukocyte | 2.22e-30 | 115 |
leukocyte | 3.63e-29 | 136 |
hematopoietic oligopotent progenitor cell | 4.94e-23 | 161 |
hematopoietic multipotent progenitor cell | 4.94e-23 | 161 |
hematopoietic stem cell | 1.21e-21 | 168 |
hematopoietic cell | 3.14e-21 | 177 |
macrophage | 2.10e-12 | 6 |
mesenchymal cell | 9.36e-10 | 354 |
connective tissue cell | 2.39e-09 | 361 |
multi fate stem cell | 4.22e-09 | 427 |
somatic stem cell | 8.34e-09 | 433 |
motile cell | 1.55e-08 | 386 |
stem cell | 2.01e-08 | 441 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 8.72e-51 | 76 |
bone element | 2.24e-46 | 82 |
immune system | 2.92e-42 | 93 |
skeletal element | 2.10e-41 | 90 |
hematopoietic system | 3.07e-37 | 98 |
blood island | 3.07e-37 | 98 |
skeletal system | 2.66e-36 | 100 |
hemolymphoid system | 5.07e-35 | 108 |
musculoskeletal system | 5.82e-23 | 167 |
lateral plate mesoderm | 3.48e-19 | 203 |
mesoderm | 3.20e-12 | 315 |
mesoderm-derived structure | 3.20e-12 | 315 |
presumptive mesoderm | 3.20e-12 | 315 |
connective tissue | 8.57e-09 | 371 |