FFCP PHASE1:Hg19::chr8:52811640..52811696,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr8:52811640..52811696,-
|short_description=p2@PCMTD1
|description=CAGE_peak_2_at_PCMTD1_5end
|association_with_transcript=0bp_to_ENST00000360540,ENST000005213...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=115294 | |EntrezGene=115294 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30483 | |HGNC=30483 | ||
|TSSclassifier=strong | |||
|UniProt=Q96MG8,E5RGG7 | |UniProt=Q96MG8,E5RGG7 | ||
|association_with_transcript=0bp_to_ENST00000360540,ENST00000521344_5end | |||
|cluster_id=chr8:52811640..52811696,- | |||
|description=CAGE_peak_2_at_PCMTD1_5end | |||
|id=chr8:52811640..52811696,- | |||
|ontology_enrichment_celltype=CL:0000738!1.31e-16!140;CL:0000037!5.44e-14!172;CL:0000566!5.44e-14!172;CL:0002031!1.78e-12!124;CL:0002032!3.83e-12!165;CL:0000837!3.83e-12!165;CL:0002087!1.86e-11!119;CL:0000988!5.65e-11!182;CL:0000766!2.37e-09!76;CL:0000763!1.69e-07!112;CL:0000049!1.69e-07!112;CL:0000557!2.07e-07!71;CL:0000839!2.90e-07!70 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,1.72e-17,136;CL:0000037,1.18e-14,168;CL:0002031,2.98e-13,120;CL:0002032,9.27e-13,161;CL:0000837,9.27e-13,161;CL:0002087,3.31e-12,115;CL:0000988,8.26e-12,177;CL:0000766,3.01e-10,72;CL:0000557,3.47e-08,67;CL:0000763,4.66e-08,108;CL:0000049,4.66e-08,108;CL:0000839,4.91e-08,66;CL:0002009,3.44e-07,61;CL:0002194,7.57e-07,59;CL:0000576,7.57e-07,59;CL:0000040,7.57e-07,59;CL:0000559,7.57e-07,59 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.25e-45!115;UBERON:0001049!1.75e-13!57;UBERON:0005068!1.75e-13!57;UBERON:0006241!1.75e-13!57;UBERON:0007135!1.75e-13!57;UBERON:0003080!2.03e-11!42;UBERON:0002780!6.67e-11!41;UBERON:0001890!6.67e-11!41;UBERON:0006240!6.67e-11!41;UBERON:0002390!1.23e-10!102;UBERON:0003061!1.23e-10!102;UBERON:0002616!4.67e-10!59;UBERON:0002193!2.54e-09!112;UBERON:0000955!5.53e-09!69;UBERON:0006238!5.53e-09!69;UBERON:0002020!1.76e-08!34;UBERON:0003528!1.76e-08!34;UBERON:0001893!1.88e-08!34;UBERON:0001017!3.27e-08!82;UBERON:0002791!3.73e-08!33;UBERON:0002346!6.16e-08!90;UBERON:0001869!7.26e-08!32;UBERON:0002619!1.13e-07!22;UBERON:0005743!1.14e-07!86;UBERON:0003075!1.51e-07!86;UBERON:0007284!1.51e-07!86;UBERON:0000073!4.86e-07!94;UBERON:0001016!4.86e-07!94;UBERON:0001950!4.87e-07!20 | |||
|ontology_enrichment_uberon_v019=UBERON:0007023;2.12e-12;114!UBERON:0002780;2.84e-08;41!UBERON:0001890;2.84e-08;41!UBERON:0002619;1.27e-07;22!UBERON:0000073;2.85e-07;53!UBERON:0002616;2.85e-07;53!UBERON:0002791;3.27e-07;32!UBERON:0003528;3.54e-07;34!UBERON:0002020;3.54e-07;34!UBERON:0001869;3.82e-07;32!UBERON:0001893;4.65e-07;34!UBERON:0001950;5.34e-07;20 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,3.87e-45,114;UBERON:0001049,5.67e-13,56;UBERON:0005068,5.67e-13,56;UBERON:0006241,5.67e-13,56;UBERON:0007135,5.67e-13,56;UBERON:0000073,1.15e-11,53;UBERON:0002616,1.15e-11,53;UBERON:0002390,1.97e-11,98;UBERON:0003061,1.97e-11,98;UBERON:0002780,6.67e-11,41;UBERON:0001890,6.67e-11,41;UBERON:0003080,6.67e-11,41;UBERON:0006240,6.67e-11,41;UBERON:0002193,5.47e-10,108;UBERON:0000955,1.42e-08,68;UBERON:0006238,1.42e-08,68;UBERON:0003528,1.76e-08,34;UBERON:0002020,1.76e-08,34;UBERON:0001893,1.88e-08,34;UBERON:0002791,6.86e-08,32;UBERON:0001869,7.26e-08,32;UBERON:0001017,7.69e-08,81;UBERON:0002619,1.13e-07,22;UBERON:0001016,3.68e-07,89;UBERON:0002346,4.80e-07,86;UBERON:0001950,4.87e-07,20 | |||
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| ||
|short_description=p2@PCMTD1 | |||
}} | }} |
Latest revision as of 11:10, 18 September 2015
Short description: | p2@PCMTD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_PCMTD1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000360540, ENST00000521344_5end |
EntrezGene: | PCMTD1 |
HGNC: | 30483 |
UniProt: | Q96MG8E5RGG7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 1.72e-17 | 136 |
hematopoietic stem cell | 1.18e-14 | 168 |
hematopoietic lineage restricted progenitor cell | 2.98e-13 | 120 |
hematopoietic oligopotent progenitor cell | 9.27e-13 | 161 |
hematopoietic multipotent progenitor cell | 9.27e-13 | 161 |
nongranular leukocyte | 3.31e-12 | 115 |
hematopoietic cell | 8.26e-12 | 177 |
myeloid leukocyte | 3.01e-10 | 72 |
granulocyte monocyte progenitor cell | 3.47e-08 | 67 |
myeloid cell | 4.66e-08 | 108 |
common myeloid progenitor | 4.66e-08 | 108 |
myeloid lineage restricted progenitor cell | 4.91e-08 | 66 |
macrophage dendritic cell progenitor | 3.44e-07 | 61 |
monopoietic cell | 7.57e-07 | 59 |
monocyte | 7.57e-07 | 59 |
monoblast | 7.57e-07 | 59 |
promonocyte | 7.57e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
adult organism | 3.87e-45 | 114 |
neural tube | 5.67e-13 | 56 |
neural rod | 5.67e-13 | 56 |
future spinal cord | 5.67e-13 | 56 |
neural keel | 5.67e-13 | 56 |
regional part of nervous system | 1.15e-11 | 53 |
regional part of brain | 1.15e-11 | 53 |
hematopoietic system | 1.97e-11 | 98 |
blood island | 1.97e-11 | 98 |
regional part of forebrain | 6.67e-11 | 41 |
forebrain | 6.67e-11 | 41 |
anterior neural tube | 6.67e-11 | 41 |
future forebrain | 6.67e-11 | 41 |
hemolymphoid system | 5.47e-10 | 108 |
brain | 1.42e-08 | 68 |
future brain | 1.42e-08 | 68 |
brain grey matter | 1.76e-08 | 34 |
gray matter | 1.76e-08 | 34 |
telencephalon | 1.88e-08 | 34 |
regional part of telencephalon | 6.86e-08 | 32 |
cerebral hemisphere | 7.26e-08 | 32 |
central nervous system | 7.69e-08 | 81 |
regional part of cerebral cortex | 1.13e-07 | 22 |
nervous system | 3.68e-07 | 89 |
neurectoderm | 4.80e-07 | 86 |
neocortex | 4.87e-07 | 20 |