FFCP PHASE1:Hg19::chr12:46662913..46662948,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=81539 | |EntrezGene=81539 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=13447 | |HGNC=13447 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-11bp_to_ENST00000546893_5end | |association_with_transcript=-11bp_to_ENST00000546893_5end | ||
|cluster_id=chr12:46662913..46662948,- | |||
|description=CAGE_peak_10_at_SLC38A1_5end | |description=CAGE_peak_10_at_SLC38A1_5end | ||
|id=chr12:46662913..46662948,- | |id=chr12:46662913..46662948,- | ||
Latest revision as of 10:54, 18 September 2015
| Short description: | p10@SLC38A1 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_10_at_SLC38A1_5end |
| Coexpression cluster: | NA |
| Association with transcript: | -11bp_to_ENST00000546893_5end |
| EntrezGene: | SLC38A1 |
| HGNC: | 13447 |
| UniProt: | NA |
| Genome view: | ZENBU |
View on UCSC genome browser
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CAGE Expression
| Sample | p10@SLC38A1 |
|---|
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| neural tube | 6.56e-23 | 56 |
| neural rod | 6.56e-23 | 56 |
| future spinal cord | 6.56e-23 | 56 |
| neural keel | 6.56e-23 | 56 |
| central nervous system | 3.27e-22 | 81 |
| nervous system | 2.28e-21 | 89 |
| regional part of nervous system | 3.44e-21 | 53 |
| regional part of brain | 3.44e-21 | 53 |
| brain | 1.29e-19 | 68 |
| future brain | 1.29e-19 | 68 |
Showing 1 to 10 of 35 entries
