FFCP PHASE1:Hg19::chr17:79989519..79989570,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5881 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9803 | |||
|TSSclassifier=strong | |||
|UniProt=P60763 | |||
|association_with_transcript=0bp_to_ENST00000306897,NM_005052,uc002kdf.2_5end | |||
|cluster_id=chr17:79989519..79989570,+ | |||
|coexpression_cluster_id=C3700 | |||
|description=CAGE_peak_1_at_RAC3_5end | |||
|id=chr17:79989519..79989570,+ | |||
|ontology_enrichment_celltype=CL:0002321!2.23e-23!248;CL:0000220!1.01e-22!246;CL:0000066!3.85e-22!254;CL:0000133!9.23e-12!59;CL:0000221!9.66e-12!71;CL:0000222!3.00e-09!119;CL:0002319!9.43e-09!25;CL:1000449!4.11e-08!16;CL:0002078!5.67e-08!44;CL:0000055!5.83e-08!180;CL:0000115!6.65e-08!35;CL:0000333!1.13e-07!41;CL:1000497!1.55e-07!18;CL:0002518!1.55e-07!18;CL:0000548!6.55e-07!679;CL:0000004!6.55e-07!679;CL:0000255!6.55e-07!679;CL:0002139!7.23e-07!24;CL:0000012!8.81e-07!682 | |||
|ontology_enrichment_celltype_v019=CL:0002319;6.01e-09;25!CL:1000449;4.92e-08;15!CL:1000497;1.99e-07;17!CL:0002518;1.99e-07;17!CL:0000115;3.46e-07;36!CL:0002139;6.10e-07;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,4.83e-24,250;CL:0000066,8.85e-22,253;CL:0000221,3.14e-12,72;CL:0000133,6.02e-12,59;CL:0000222,9.90e-10,121;CL:0002319,6.05e-09,25;CL:0000115,1.89e-08,36;CL:0002078,3.06e-08,45;CL:1000449,5.40e-08,15;CL:0000333,8.06e-08,41;CL:1000497,2.17e-07,17;CL:0002518,2.17e-07,17;CL:0002139,6.64e-07,24;CL:0000393,8.59e-07,61;CL:0000211,8.59e-07,61 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000119!2.81e-17!312;UBERON:0000483!1.15e-16!309;UBERON:0000481!1.56e-12!347;UBERON:0000475!6.23e-11!365;UBERON:0000924!8.48e-10!173;UBERON:0006601!8.48e-10!173;UBERON:0000064!2.29e-09!219;UBERON:0004121!3.64e-09!169;UBERON:0004211!4.11e-08!16;UBERON:0001285!4.11e-08!16;UBERON:0007684!4.11e-08!16;UBERON:0003220!4.11e-08!16;UBERON:0004208!4.11e-08!16;UBERON:0006555!9.12e-08!17;UBERON:0005103!9.12e-08!17;UBERON:0000083!9.12e-08!17;UBERON:0009201!9.12e-08!17;UBERON:0004819!9.12e-08!17;UBERON:0006553!9.12e-08!17;UBERON:0003074!9.12e-08!17;UBERON:0003060!9.12e-08!17;UBERON:0002100!1.04e-07!216;UBERON:0002049!1.25e-07!79;UBERON:0007798!1.25e-07!79;UBERON:0000025!2.68e-07!194;UBERON:0000477!5.22e-07!286;UBERON:0000080!5.35e-07!18;UBERON:0002120!5.35e-07!18;UBERON:0004875!5.35e-07!18;UBERON:0005721!5.35e-07!18;UBERON:0005754!5.35e-07!18;UBERON:0007297!5.35e-07!18;UBERON:0000487!7.94e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0000490;1.11e-08;33!UBERON:0006555;4.92e-08;15!UBERON:0004819;4.92e-08;15!UBERON:0001285;4.92e-08;15!UBERON:0007684;4.92e-08;15!UBERON:0006554;1.73e-07;30!UBERON:0001008;1.73e-07;30!UBERON:0002113;2.45e-07;24!UBERON:0011143;2.45e-07;24!UBERON:0000487;6.18e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000119,1.71e-16,309;UBERON:0000483,6.80e-16,306;UBERON:0004121,5.66e-10,171;UBERON:0000924,5.66e-10,171;UBERON:0006601,5.66e-10,171;UBERON:0000490,4.96e-08,148;UBERON:0004211,5.40e-08,15;UBERON:0009773,5.40e-08,15;UBERON:0001231,5.40e-08,15;UBERON:0001285,5.40e-08,15;UBERON:0007684,5.40e-08,15;UBERON:0004208,5.40e-08,15;UBERON:0006555,1.24e-07,16;UBERON:0004819,1.24e-07,16;UBERON:0002049,1.47e-07,78;UBERON:0007798,1.47e-07,78;UBERON:0003104,2.72e-07,160;UBERON:0009142,2.72e-07,160;UBERON:0007503,4.20e-07,78;UBERON:0002100,6.60e-07,199;UBERON:0000487,7.30e-07,22;UBERON:0000025,7.78e-07,192 | |||
|phase1_expression=2.90685406832891,6.42301571672949,2.67813367782345,5.00366491765652,11.6209884551095,6.10636966870258,15.1979926900986,5.05375898741465,21.1560358841869,9.09215565055583,52.3350875979321,11.5773927228991,27.4317657357592,11.1389717664042,15.90707403494,4.03395087871065,9.64311244838363,6.57279081348636,10.7345215733912,29.7952960545827,57.9361963133679,36.3607476914582,18.6053391635187,30.5229967912532,43.312210660207,1.06978768047132,0.656804715599566,0.865818594450472,0,0,1.70297735647684,20.2272669385364,30.120591877825,14.4204063965047,0,0,8.80801318004542,0,0,0,0,0,0,0,0.377875943688809,0,0,0,0,0,0.512321413058201,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.42159801053347,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.64342657158052,3.36305137788922,5.00429761072646,0.393419540227666,0.786021525498329,1.64481199199607,0.501559486172034,0.977766799900771,0,0,0.779873198196215,0.589211814949674,0.443067789167242,0,2.0494611156108,2.9913649938772,3.12432018746985,4.69795030235942,1.73881851441031,0.444859689486181,0.267540828089713,0,1.47302145506836,0,0,0.253019692019503,0.318565414324097,0,0.950452044448374,0.301150238155546,0,0,0.236777252044017,0,0.201606743224732,0,0,0,6.03630773733273,3.96373941714944,5.78302643815306,2.00535164254356,3.47631645505977,1.5905718941022,3.89307896242109,16.0709189178915,28.3813628752082,24.3302356369959,4.78073625566651,15.6646973965793,18.168437696437,0,0,0.930705723632056,0.476981248610684,0,0,12.5220316641024,35.2696183993511,8.33137203858226,20.3510859092643,20.1359729380755,23.1099155229657,18.809546988313,18.864423419361,10.3172216179146,6.02497102976406,7.25092770796465,15.9657142200888,17.5724681434682,6.25027236587977,44.5578071334968,8.66207364355574,17.5132910648412,16.6664991115317,35.2628266171531,18.0360475317944,43.9684185432977,0,0,18.3159501899864,2.48485975847659,3.54565432660823,3.17782033951725,3.44203944898576,4.61068896857864,10.0921968025615,11.7423895302675,30.0934409068935,5.29058760179603,12.9322245186901,11.1154094117152,10.8977347904351,9.21881479167998,22.7291788878783,20.9147251476315,17.1141546463335,26.0040704160134,32.8816596202542,22.9859581002747,20.927170198635,10.0035543914898,19.039319183324,14.2589578022556,1.18800285728205,3.4617370098998,4.55080680969013,15.8095991199572,15.31858636982,14.8891038647637,3.3247693858102,7.90159717585508,2.45190236639216,2.55404700141215,10.889489583362,1.97328599257748,2.13557388818567,1.27159140695737,1.80054657650641,1.44273540933814,1.28820270022815,1.30281799432113,1.68776332241266,0.876933046450788,0.757301322732344,1.47279837827679,2.58633690910099,1.06502877754984,2.51880245569101,3.22165125389926,2.70565194428616,3.00020732649918,4.58887352622406,17.198292564273,18.5541675650079,17.5452853732973,14.7198698121826,16.6531761577915,27.0083245716114,7.8224766164908,9.64861407289328,2.76269842704961,7.89425477654364,18.0469870417396,4.73227200159376,4.72037132218685,5.06123162755312,3.74999507290139,2.61455332910887,3.79632990577755,5.52808363456674,4.12065076763227,5.38646019724947,16.2394200017423,47.6822030931716,13.9935163852676,41.1624391879517,0,0.982827216677626,2.36315962672562,0.882926198829301,7.50229475112993,14.5832638753747,7.24351883696929,6.74410519545717,7.33861498604905,10.3699058577553,5.86454949558584,47.8370001228606,31.7528952455601,16.8099087213861,11.0364172581672,9.23945265670872,12.5006088395685,7.99067439385313,11.0628615714299,9.4433477830436,0.246217006087397,0.702012795417713,1.63494278517601,4.68669169933885,3.02367830757947,4.67857820899875,4.29880908973672,4.65014301622339,12.2682457332868,0,1.93706554829097,0.414656231081544,0.288239906833923,0.50496973370552,8.8262073066115,19.8633981290304,7.03304683260282,30.7930402840869,28.9973529423372,9.31063479316144,10.2897515747008,14.0163855431701,13.5147621338317,11.734125731352,4.26596662000667,35.7656445851882,14.370146793452,2.6593811658487,6.24044621468197,14.9180277072042,41.1362482867507,19.4488190681753,7.57783366388182,20.6196210048748,31.2831327976692,9.77208552881205,7.10783897485092,23.7585561880029,6.93310567237048,7.84380112740265,9.79735313584159,0,1.00451418286425,0,10.5434936416296,19.5265290917994,11.4109524032575,2.31650090668127,6.98619496671304,1.43248770591916,13.6743875672103,0,0,0.128343036279748,8.89331184778622,18.219579540067,27.0651084472193,51.9300422536481,61.2421201587037,0,0,0,7.36148950314839,21.0071618845064,28.4828274884722,11.4383973841944,4.28229573113188,6.93890626149313,5.73992933464295,3.61135319673263,18.1926003244788,38.2850363782268,4.64957918974806,13.2745801350026,2.86715927744673,21.5381273209015,33.6280555334639,0.206768026122887,0,0.426910231213777,4.54691357169389,19.9722527412596,14.212343786495,1.24053903909388,0.61384789315225,2.24528075546459,1.66580894032411,2.55853624533352,3.21707842287215,4.45254199334973,1.3878872442239,5.32685175939381,0.9033987161519,1.55776328755086,1.74315567689939,9.30617761855491,10.6268429260741,8.10312702635888,1.722216722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| |||
|short_description=p1@RAC3 | |||
}} |
Latest revision as of 10:44, 18 September 2015
Short description: | p1@RAC3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RAC3_5end |
Coexpression cluster: | C3700_occipital_brain_temporal_duodenum_parietal_Renal_Neurons |
Association with transcript: | 0bp_to_ENST00000306897, NM_005052, uc002kdf.2_5end |
EntrezGene: | RAC3 |
HGNC: | 9803 |
UniProt: | P60763 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 4.83e-24 | 250 |
epithelial cell | 8.85e-22 | 253 |
ectodermal cell | 3.14e-12 | 72 |
neurectodermal cell | 6.02e-12 | 59 |
mesodermal cell | 9.90e-10 | 121 |
neural cell | 6.05e-09 | 25 |
endothelial cell | 1.89e-08 | 36 |
meso-epithelial cell | 3.06e-08 | 45 |
epithelial cell of nephron | 5.40e-08 | 15 |
migratory neural crest cell | 8.06e-08 | 41 |
kidney cell | 2.17e-07 | 17 |
kidney epithelial cell | 2.17e-07 | 17 |
endothelial cell of vascular tree | 6.64e-07 | 24 |
electrically responsive cell | 8.59e-07 | 61 |
electrically active cell | 8.59e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
cell layer | 1.71e-16 | 309 |
epithelium | 6.80e-16 | 306 |
ectoderm-derived structure | 5.66e-10 | 171 |
ectoderm | 5.66e-10 | 171 |
presumptive ectoderm | 5.66e-10 | 171 |
unilaminar epithelium | 4.96e-08 | 148 |
nephron epithelium | 5.40e-08 | 15 |
renal tubule | 5.40e-08 | 15 |
nephron tubule | 5.40e-08 | 15 |
nephron | 5.40e-08 | 15 |
uriniferous tubule | 5.40e-08 | 15 |
nephrogenic mesenchyme | 5.40e-08 | 15 |
excretory tube | 1.24e-07 | 16 |
kidney epithelium | 1.24e-07 | 16 |
vasculature | 1.47e-07 | 78 |
vascular system | 1.47e-07 | 78 |
mesenchyme | 2.72e-07 | 160 |
entire embryonic mesenchyme | 2.72e-07 | 160 |
epithelial vesicle | 4.20e-07 | 78 |
trunk | 6.60e-07 | 199 |
simple squamous epithelium | 7.30e-07 | 22 |
tube | 7.78e-07 | 192 |