FFCP PHASE1:Hg19::chr17:79989519..79989570,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5881 | |EntrezGene=5881 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9803 | |HGNC=9803 | ||
|TSSclassifier=strong | |||
|UniProt=P60763 | |UniProt=P60763 | ||
|association_with_transcript=0bp_to_ENST00000306897,NM_005052,uc002kdf.2_5end | |association_with_transcript=0bp_to_ENST00000306897,NM_005052,uc002kdf.2_5end | ||
|cluster_id=chr17:79989519..79989570,+ | |||
|coexpression_cluster_id=C3700 | |||
|description=CAGE_peak_1_at_RAC3_5end | |description=CAGE_peak_1_at_RAC3_5end | ||
|id=chr17:79989519..79989570,+ | |id=chr17:79989519..79989570,+ | ||
|ontology_enrichment_celltype=CL:0002321!2.23e-23!248;CL:0000220!1.01e-22!246;CL:0000066!3.85e-22!254;CL:0000133!9.23e-12!59;CL:0000221!9.66e-12!71;CL:0000222!3.00e-09!119;CL:0002319!9.43e-09!25;CL:1000449!4.11e-08!16;CL:0002078!5.67e-08!44;CL:0000055!5.83e-08!180;CL:0000115!6.65e-08!35;CL:0000333!1.13e-07!41;CL:1000497!1.55e-07!18;CL:0002518!1.55e-07!18;CL:0000548!6.55e-07!679;CL:0000004!6.55e-07!679;CL:0000255!6.55e-07!679;CL:0002139!7.23e-07!24;CL:0000012!8.81e-07!682 | |ontology_enrichment_celltype=CL:0002321!2.23e-23!248;CL:0000220!1.01e-22!246;CL:0000066!3.85e-22!254;CL:0000133!9.23e-12!59;CL:0000221!9.66e-12!71;CL:0000222!3.00e-09!119;CL:0002319!9.43e-09!25;CL:1000449!4.11e-08!16;CL:0002078!5.67e-08!44;CL:0000055!5.83e-08!180;CL:0000115!6.65e-08!35;CL:0000333!1.13e-07!41;CL:1000497!1.55e-07!18;CL:0002518!1.55e-07!18;CL:0000548!6.55e-07!679;CL:0000004!6.55e-07!679;CL:0000255!6.55e-07!679;CL:0002139!7.23e-07!24;CL:0000012!8.81e-07!682 | ||
|ontology_enrichment_celltype_v019=CL:0002319;6.01e-09;25!CL:1000449;4.92e-08;15!CL:1000497;1.99e-07;17!CL:0002518;1.99e-07;17!CL:0000115;3.46e-07;36!CL:0002139;6.10e-07;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,4.83e-24,250;CL:0000066,8.85e-22,253;CL:0000221,3.14e-12,72;CL:0000133,6.02e-12,59;CL:0000222,9.90e-10,121;CL:0002319,6.05e-09,25;CL:0000115,1.89e-08,36;CL:0002078,3.06e-08,45;CL:1000449,5.40e-08,15;CL:0000333,8.06e-08,41;CL:1000497,2.17e-07,17;CL:0002518,2.17e-07,17;CL:0002139,6.64e-07,24;CL:0000393,8.59e-07,61;CL:0000211,8.59e-07,61 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000119!2.81e-17!312;UBERON:0000483!1.15e-16!309;UBERON:0000481!1.56e-12!347;UBERON:0000475!6.23e-11!365;UBERON:0000924!8.48e-10!173;UBERON:0006601!8.48e-10!173;UBERON:0000064!2.29e-09!219;UBERON:0004121!3.64e-09!169;UBERON:0004211!4.11e-08!16;UBERON:0001285!4.11e-08!16;UBERON:0007684!4.11e-08!16;UBERON:0003220!4.11e-08!16;UBERON:0004208!4.11e-08!16;UBERON:0006555!9.12e-08!17;UBERON:0005103!9.12e-08!17;UBERON:0000083!9.12e-08!17;UBERON:0009201!9.12e-08!17;UBERON:0004819!9.12e-08!17;UBERON:0006553!9.12e-08!17;UBERON:0003074!9.12e-08!17;UBERON:0003060!9.12e-08!17;UBERON:0002100!1.04e-07!216;UBERON:0002049!1.25e-07!79;UBERON:0007798!1.25e-07!79;UBERON:0000025!2.68e-07!194;UBERON:0000477!5.22e-07!286;UBERON:0000080!5.35e-07!18;UBERON:0002120!5.35e-07!18;UBERON:0004875!5.35e-07!18;UBERON:0005721!5.35e-07!18;UBERON:0005754!5.35e-07!18;UBERON:0007297!5.35e-07!18;UBERON:0000487!7.94e-07!22 | |ontology_enrichment_uberon=UBERON:0000119!2.81e-17!312;UBERON:0000483!1.15e-16!309;UBERON:0000481!1.56e-12!347;UBERON:0000475!6.23e-11!365;UBERON:0000924!8.48e-10!173;UBERON:0006601!8.48e-10!173;UBERON:0000064!2.29e-09!219;UBERON:0004121!3.64e-09!169;UBERON:0004211!4.11e-08!16;UBERON:0001285!4.11e-08!16;UBERON:0007684!4.11e-08!16;UBERON:0003220!4.11e-08!16;UBERON:0004208!4.11e-08!16;UBERON:0006555!9.12e-08!17;UBERON:0005103!9.12e-08!17;UBERON:0000083!9.12e-08!17;UBERON:0009201!9.12e-08!17;UBERON:0004819!9.12e-08!17;UBERON:0006553!9.12e-08!17;UBERON:0003074!9.12e-08!17;UBERON:0003060!9.12e-08!17;UBERON:0002100!1.04e-07!216;UBERON:0002049!1.25e-07!79;UBERON:0007798!1.25e-07!79;UBERON:0000025!2.68e-07!194;UBERON:0000477!5.22e-07!286;UBERON:0000080!5.35e-07!18;UBERON:0002120!5.35e-07!18;UBERON:0004875!5.35e-07!18;UBERON:0005721!5.35e-07!18;UBERON:0005754!5.35e-07!18;UBERON:0007297!5.35e-07!18;UBERON:0000487!7.94e-07!22 | ||
|ontology_enrichment_uberon_v019=UBERON:0000490;1.11e-08;33!UBERON:0006555;4.92e-08;15!UBERON:0004819;4.92e-08;15!UBERON:0001285;4.92e-08;15!UBERON:0007684;4.92e-08;15!UBERON:0006554;1.73e-07;30!UBERON:0001008;1.73e-07;30!UBERON:0002113;2.45e-07;24!UBERON:0011143;2.45e-07;24!UBERON:0000487;6.18e-07;22 | |||
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| ||
|short_description=p1@RAC3 | |short_description=p1@RAC3 | ||
}} | }} |
Latest revision as of 10:44, 18 September 2015
Short description: | p1@RAC3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RAC3_5end |
Coexpression cluster: | C3700_occipital_brain_temporal_duodenum_parietal_Renal_Neurons |
Association with transcript: | 0bp_to_ENST00000306897, NM_005052, uc002kdf.2_5end |
EntrezGene: | RAC3 |
HGNC: | 9803 |
UniProt: | P60763 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 4.83e-24 | 250 |
epithelial cell | 8.85e-22 | 253 |
ectodermal cell | 3.14e-12 | 72 |
neurectodermal cell | 6.02e-12 | 59 |
mesodermal cell | 9.90e-10 | 121 |
neural cell | 6.05e-09 | 25 |
endothelial cell | 1.89e-08 | 36 |
meso-epithelial cell | 3.06e-08 | 45 |
epithelial cell of nephron | 5.40e-08 | 15 |
migratory neural crest cell | 8.06e-08 | 41 |
kidney cell | 2.17e-07 | 17 |
kidney epithelial cell | 2.17e-07 | 17 |
endothelial cell of vascular tree | 6.64e-07 | 24 |
electrically responsive cell | 8.59e-07 | 61 |
electrically active cell | 8.59e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
cell layer | 1.71e-16 | 309 |
epithelium | 6.80e-16 | 306 |
ectoderm-derived structure | 5.66e-10 | 171 |
ectoderm | 5.66e-10 | 171 |
presumptive ectoderm | 5.66e-10 | 171 |
unilaminar epithelium | 4.96e-08 | 148 |
nephron epithelium | 5.40e-08 | 15 |
renal tubule | 5.40e-08 | 15 |
nephron tubule | 5.40e-08 | 15 |
nephron | 5.40e-08 | 15 |
uriniferous tubule | 5.40e-08 | 15 |
nephrogenic mesenchyme | 5.40e-08 | 15 |
excretory tube | 1.24e-07 | 16 |
kidney epithelium | 1.24e-07 | 16 |
vasculature | 1.47e-07 | 78 |
vascular system | 1.47e-07 | 78 |
mesenchyme | 2.72e-07 | 160 |
entire embryonic mesenchyme | 2.72e-07 | 160 |
epithelial vesicle | 4.20e-07 | 78 |
trunk | 6.60e-07 | 199 |
simple squamous epithelium | 7.30e-07 | 22 |
tube | 7.78e-07 | 192 |