FFCP PHASE1:Hg19::chr16:88752836..88752852,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr16:88752836..88752852,- to FFCP PHASE1:Hg19::chr16:88752836..88752852,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=333929 | |EntrezGene=333929 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18411 | |HGNC=18411 | ||
|TSSclassifier=strong | |||
|UniProt=Q3KNW1 | |UniProt=Q3KNW1 | ||
|association_with_transcript=29bp_to_ENST00000332281,NM_178310,uc002flj.2_5end | |||
|cluster_id=chr16:88752836..88752852,- | |||
|description=CAGE_peak_3_at_SNAI3_5end | |||
|id=chr16:88752836..88752852,- | |||
|ontology_enrichment_celltype=CL:0000037!3.58e-42!172;CL:0000566!3.58e-42!172;CL:0002032!5.43e-41!165;CL:0000837!5.43e-41!165;CL:0000738!2.03e-37!140;CL:0000988!2.16e-37!182;CL:0002087!1.28e-30!119;CL:0002031!2.42e-30!124;CL:0000763!9.21e-28!112;CL:0000049!9.21e-28!112;CL:0000766!1.83e-24!76;CL:0000557!1.01e-20!71;CL:0000839!1.21e-18!70;CL:0002009!4.69e-17!65;CL:0002194!7.81e-17!63;CL:0000576!7.81e-17!63;CL:0000040!7.81e-17!63;CL:0000559!7.81e-17!63;CL:0002057!4.69e-12!42;CL:0000542!9.86e-12!53;CL:0000051!9.86e-12!53;CL:0000838!2.36e-11!52;CL:0000860!1.57e-10!45 | |||
|ontology_enrichment_celltype_v019=CL:0000094;3.18e-14;8!CL:0000081;5.29e-10;11!CL:0002393;2.17e-09;6!CL:0002397;2.17e-09;6!CL:0000775;1.53e-08;3!CL:0000766;9.54e-08;69!CL:0000738;1.60e-07;136!CL:0000767;3.42e-07;3!CL:0000623;3.42e-07;3!CL:0000840;8.19e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,4.78e-26,168;CL:0002032,5.86e-25,161;CL:0000837,5.86e-25,161;CL:0000738,7.33e-25,136;CL:0000988,5.50e-24,177;CL:0000766,2.05e-23,72;CL:0000763,5.52e-23,108;CL:0000049,5.52e-23,108;CL:0000557,4.87e-17,67;CL:0002031,7.21e-17,120;CL:0002087,7.62e-17,115;CL:0002009,1.76e-14,61;CL:0000094,2.24e-14,8;CL:0000839,2.91e-14,66;CL:0002194,1.33e-13,59;CL:0000576,1.33e-13,59;CL:0000040,1.33e-13,59;CL:0000559,1.33e-13,59;CL:0000473,2.69e-10,48;CL:0000234,2.69e-10,48;CL:0000081,4.13e-10,11;CL:0000775,1.57e-08,3;CL:0000623,1.61e-07,3;CL:0000825,1.61e-07,3;CL:0000767,2.26e-07,3;CL:0000860,5.01e-07,42;CL:0002057,5.01e-07,42;CL:0000840,5.53e-07,5;CL:0001029,5.53e-07,5 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!4.20e-26!102;UBERON:0003061!4.20e-26!102;UBERON:0002193!1.96e-23!112;UBERON:0002371!3.29e-18!80;UBERON:0001474!1.38e-15!86;UBERON:0002405!1.15e-13!115;UBERON:0004765!1.40e-11!101;UBERON:0001434!1.40e-11!101;UBERON:0007023!9.29e-11!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;5.23e-09;15!UBERON:0000179;5.23e-09;15!UBERON:0000463;5.23e-09;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,4.89e-22,98;UBERON:0003061,4.89e-22,98;UBERON:0002193,2.45e-20,108;UBERON:0002371,1.20e-15,76;UBERON:0001474,5.76e-14,82;UBERON:0002405,1.22e-13,93;UBERON:0004765,4.37e-12,90;UBERON:0001434,3.55e-10,100;UBERON:0000178,2.31e-09,15;UBERON:0000179,2.31e-09,15;UBERON:0000463,2.31e-09,15 | |||
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| ||
|short_description=p3@SNAI3 | |||
}} | }} |
Latest revision as of 09:55, 18 September 2015
Short description: | p3@SNAI3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SNAI3_5end |
Coexpression cluster: | NA |
Association with transcript: | 29bp_to_ENST00000332281, NM_178310, uc002flj.2_5end |
EntrezGene: | SNAI3 |
HGNC: | 18411 |
UniProt: | Q3KNW1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 4.78e-26 | 168 |
hematopoietic oligopotent progenitor cell | 5.86e-25 | 161 |
hematopoietic multipotent progenitor cell | 5.86e-25 | 161 |
leukocyte | 7.33e-25 | 136 |
hematopoietic cell | 5.50e-24 | 177 |
myeloid leukocyte | 2.05e-23 | 72 |
myeloid cell | 5.52e-23 | 108 |
common myeloid progenitor | 5.52e-23 | 108 |
granulocyte monocyte progenitor cell | 4.87e-17 | 67 |
hematopoietic lineage restricted progenitor cell | 7.21e-17 | 120 |
nongranular leukocyte | 7.62e-17 | 115 |
macrophage dendritic cell progenitor | 1.76e-14 | 61 |
granulocyte | 2.24e-14 | 8 |
myeloid lineage restricted progenitor cell | 2.91e-14 | 66 |
monopoietic cell | 1.33e-13 | 59 |
monocyte | 1.33e-13 | 59 |
monoblast | 1.33e-13 | 59 |
promonocyte | 1.33e-13 | 59 |
defensive cell | 2.69e-10 | 48 |
phagocyte | 2.69e-10 | 48 |
blood cell | 4.13e-10 | 11 |
neutrophil | 1.57e-08 | 3 |
natural killer cell | 1.61e-07 | 3 |
pro-NK cell | 1.61e-07 | 3 |
basophil | 2.26e-07 | 3 |
classical monocyte | 5.01e-07 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.01e-07 | 42 |
immature conventional dendritic cell | 5.53e-07 | 5 |
common dendritic progenitor | 5.53e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 4.89e-22 | 98 |
blood island | 4.89e-22 | 98 |
hemolymphoid system | 2.45e-20 | 108 |
bone marrow | 1.20e-15 | 76 |
bone element | 5.76e-14 | 82 |
immune system | 1.22e-13 | 93 |
skeletal element | 4.37e-12 | 90 |
skeletal system | 3.55e-10 | 100 |
blood | 2.31e-09 | 15 |
haemolymphatic fluid | 2.31e-09 | 15 |
organism substance | 2.31e-09 | 15 |