FFCP PHASE1:Hg19::chr12:45270483..45270502,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4753 | |EntrezGene=4753 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7751 | |HGNC=7751 | ||
|TSSclassifier=strong | |||
|UniProt=Q99435 | |UniProt=Q99435 | ||
|association_with_transcript=-236bp_to_NM_001145108,NM_006159,uc001rog.2,uc001roh.2,uc001roj.2,uc009zkd.2,uc010slb.1_5end | |association_with_transcript=-236bp_to_NM_001145108,NM_006159,uc001rog.2,uc001roh.2,uc001roj.2,uc009zkd.2,uc010slb.1_5end | ||
|cluster_id=chr12:45270483..45270502,- | |||
|description=CAGE_peak_9_at_NELL2_5end | |description=CAGE_peak_9_at_NELL2_5end | ||
|id=chr12:45270483..45270502,- | |id=chr12:45270483..45270502,- | ||
|ontology_enrichment_celltype=CL:0000625;1.09e-48;11!CL:0000791;6.99e-42;18!CL:0000789;6.99e-42;18!CL:0002419;6.99e-42;18!CL:0000084;1.77e-29;25!CL:0002553;3.61e-07;1 | |ontology_enrichment_celltype=CL:0000791!7.38e-24!18;CL:0000789!7.38e-24!18;CL:0002420!7.38e-24!18;CL:0002419!7.38e-24!18;CL:0000790!7.38e-24!18;CL:0000625!3.69e-20!11;CL:0000084!9.91e-16!25;CL:0000827!9.91e-16!25;CL:0000838!1.12e-08!52;CL:0000542!2.07e-08!53;CL:0000051!2.07e-08!53;CL:0000624!2.12e-07!6 | ||
| | |ontology_enrichment_celltype_v019=CL:0000625;1.09e-48;11!CL:0000791;6.99e-42;18!CL:0000789;6.99e-42;18!CL:0002419;6.99e-42;18!CL:0000084;1.77e-29;25!CL:0002553;3.61e-07;1 | ||
|ontology_enrichment_disease=DOID:0050619;2.95e-07;1!DOID:1357;2.95e-07;1 | |ontology_enrichment_celltype_v019_2=CL:0000625,6.21e-49,11;CL:0000791,4.02e-42,18;CL:0000789,4.02e-42,18;CL:0002420,4.02e-42,18;CL:0002419,4.02e-42,18;CL:0000790,4.02e-42,18;CL:0000084,1.19e-29,25;CL:0000827,1.19e-29,25;CL:0000838,5.40e-13,52;CL:0000542,1.05e-12,53;CL:0000051,1.05e-12,53;CL:0002553,3.73e-07,1 | ||
|ontology_enrichment_uberon=UBERON:0002619;1.26e-21;22!UBERON:0001950;2.39e-19;20!UBERON:0000956;6.37e-19;25!UBERON:0000203;6.37e-19;25!UBERON:0002021;9.04e-18;5!UBERON:0001869;1.63e-13;32!UBERON:0002791;1.77e-13;32!UBERON:0003528;3.77e-12;34!UBERON:0002020;3.77e-12;34!UBERON:0001893;5.04e-12;34!UBERON:0002780;1.21e-07;41!UBERON:0001890;1.21e-07;41!UBERON:0000955;1.54e-07;68!UBERON:0001871;2.36e-07;6!UBERON:0001764;2.95e-07;1!UBERON:0001825;2.95e-07;1 | |ontology_enrichment_development_v019=CL:0000790;6.99e-42;18 | ||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0050619;2.95e-07;1!DOID:1357;2.95e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:0050619,2.95e-07,1;DOID:1357,2.95e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0001049!2.41e-38!57;UBERON:0005068!2.41e-38!57;UBERON:0006241!2.41e-38!57;UBERON:0007135!2.41e-38!57;UBERON:0005743!3.51e-38!86;UBERON:0000073!5.09e-38!94;UBERON:0001016!5.09e-38!94;UBERON:0001017!6.44e-37!82;UBERON:0000955!4.67e-33!69;UBERON:0006238!4.67e-33!69;UBERON:0002616!7.31e-33!59;UBERON:0002346!7.80e-31!90;UBERON:0002780!1.37e-29!41;UBERON:0001890!1.37e-29!41;UBERON:0006240!1.37e-29!41;UBERON:0003080!1.14e-28!42;UBERON:0003075!3.78e-28!86;UBERON:0007284!3.78e-28!86;UBERON:0001893!4.62e-28!34;UBERON:0001869!5.33e-28!32;UBERON:0002020!6.97e-28!34;UBERON:0003528!6.97e-28!34;UBERON:0002791!1.03e-26!33;UBERON:0007023!2.35e-26!115;UBERON:0002619!4.70e-26!22;UBERON:0000956!1.80e-24!25;UBERON:0000203!1.80e-24!25;UBERON:0001950!2.58e-23!20;UBERON:0003056!1.08e-22!61;UBERON:0000153!3.04e-21!129;UBERON:0007811!3.04e-21!129;UBERON:0000924!5.38e-21!173;UBERON:0006601!5.38e-21!173;UBERON:0000033!7.29e-21!123;UBERON:0004121!5.53e-19!169;UBERON:0003076!1.28e-10!15;UBERON:0003057!1.28e-10!15;UBERON:0000200!2.74e-10!6;UBERON:0001871!7.24e-10!7;UBERON:0004733!1.96e-09!12;UBERON:0002028!1.96e-09!12;UBERON:0007277!1.96e-09!12;UBERON:0002021!2.43e-09!5;UBERON:0000349!1.44e-08!5;UBERON:0004732!1.47e-08!13;UBERON:0000178!4.74e-08!15;UBERON:0000179!4.74e-08!15;UBERON:0000463!4.74e-08!15;UBERON:0002298!4.14e-07!8 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;1.26e-21;22!UBERON:0001950;2.39e-19;20!UBERON:0000956;6.37e-19;25!UBERON:0000203;6.37e-19;25!UBERON:0002021;9.04e-18;5!UBERON:0001869;1.63e-13;32!UBERON:0002791;1.77e-13;32!UBERON:0003528;3.77e-12;34!UBERON:0002020;3.77e-12;34!UBERON:0001893;5.04e-12;34!UBERON:0002780;1.21e-07;41!UBERON:0001890;1.21e-07;41!UBERON:0000955;1.54e-07;68!UBERON:0001871;2.36e-07;6!UBERON:0001764;2.95e-07;1!UBERON:0001825;2.95e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002619,1.49e-21,22;UBERON:0001950,2.94e-19,20;UBERON:0000956,7.36e-19,25;UBERON:0000203,7.36e-19,25;UBERON:0002021,1.90e-17,5;UBERON:0002791,1.77e-14,32;UBERON:0001869,1.77e-14,32;UBERON:0003528,1.50e-13,34;UBERON:0002020,1.50e-13,34;UBERON:0001893,1.50e-13,34;UBERON:0002780,5.38e-11,41;UBERON:0001890,5.38e-11,41;UBERON:0003080,5.38e-11,41;UBERON:0006240,5.38e-11,41;UBERON:0000955,2.62e-10,68;UBERON:0006238,2.62e-10,68;UBERON:0001016,5.57e-10,89;UBERON:0000073,6.65e-10,53;UBERON:0002616,6.65e-10,53;UBERON:0001017,9.83e-10,81;UBERON:0001049,2.82e-09,56;UBERON:0005068,2.82e-09,56;UBERON:0006241,2.82e-09,56;UBERON:0007135,2.82e-09,56;UBERON:0001871,2.21e-07,6;UBERON:0001764,2.95e-07,1;UBERON:0001825,2.95e-07,1;UBERON:0003056,6.86e-07,61 | |||
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| ||
|short_description=p9@NELL2 | |short_description=p9@NELL2 | ||
}} | }} |
Latest revision as of 09:38, 18 September 2015
Short description: | p9@NELL2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_NELL2_5end |
Coexpression cluster: | NA |
Association with transcript: | -236bp_to_NM_001145108, NM_006159, uc001rog.2, uc001roh.2, uc001roj.2, uc009zkd.2, uc010slb.1_5end |
EntrezGene: | NELL2 |
HGNC: | 7751 |
UniProt: | Q99435 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CD8-positive, alpha-beta T cell | 6.21e-49 | 11 |
mature alpha-beta T cell | 4.02e-42 | 18 |
alpha-beta T cell | 4.02e-42 | 18 |
immature T cell | 4.02e-42 | 18 |
mature T cell | 4.02e-42 | 18 |
immature alpha-beta T cell | 4.02e-42 | 18 |
T cell | 1.19e-29 | 25 |
pro-T cell | 1.19e-29 | 25 |
lymphoid lineage restricted progenitor cell | 5.40e-13 | 52 |
lymphocyte | 1.05e-12 | 53 |
common lymphoid progenitor | 1.05e-12 | 53 |
lung fibroblast | 3.73e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
regional part of cerebral cortex | 1.49e-21 | 22 |
neocortex | 2.94e-19 | 20 |
cerebral cortex | 7.36e-19 | 25 |
pallium | 7.36e-19 | 25 |
occipital lobe | 1.90e-17 | 5 |
regional part of telencephalon | 1.77e-14 | 32 |
cerebral hemisphere | 1.77e-14 | 32 |
brain grey matter | 1.50e-13 | 34 |
gray matter | 1.50e-13 | 34 |
telencephalon | 1.50e-13 | 34 |
regional part of forebrain | 5.38e-11 | 41 |
forebrain | 5.38e-11 | 41 |
anterior neural tube | 5.38e-11 | 41 |
future forebrain | 5.38e-11 | 41 |
brain | 2.62e-10 | 68 |
future brain | 2.62e-10 | 68 |
nervous system | 5.57e-10 | 89 |
regional part of nervous system | 6.65e-10 | 53 |
regional part of brain | 6.65e-10 | 53 |
central nervous system | 9.83e-10 | 81 |
neural tube | 2.82e-09 | 56 |
neural rod | 2.82e-09 | 56 |
future spinal cord | 2.82e-09 | 56 |
neural keel | 2.82e-09 | 56 |
temporal lobe | 2.21e-07 | 6 |
maxillary sinus | 2.95e-07 | 1 |
paranasal sinus | 2.95e-07 | 1 |
pre-chordal neural plate | 6.86e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
paranasal sinus cancer | 2.95e-07 | 1 |
maxillary sinus cancer | 2.95e-07 | 1 |