FFCP PHASE1:Hg19::chr17:79826336..79826347,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=396 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=678 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=151bp_to_BC007630_5end | |||
|cluster_id=chr17:79826336..79826347,- | |||
|coexpression_cluster_id=C2444 | |||
|description=CAGE_peak_16_at_ARHGDIA_5end | |||
|id=chr17:79826336..79826347,- | |||
|ontology_enrichment_celltype=CL:0002371!6.00e-12!591;CL:0000144!1.10e-11!625;CL:0000548!1.60e-10!679;CL:0000004!1.60e-10!679;CL:0000255!1.60e-10!679;CL:0000222!4.64e-10!119;CL:0000012!6.17e-10!682;CL:0002321!2.65e-09!248;CL:0000220!2.92e-09!246;CL:0000055!3.02e-09!180;CL:0000003!1.70e-08!722;CL:0000183!8.59e-07!59 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,3.88e-09,121;CL:0002321,6.37e-08,250;CL:0000187,8.31e-07,55;CL:0000048,8.89e-07,427;CL:0000680,9.99e-07,58;CL:0000056,9.99e-07,58;CL:0000355,9.99e-07,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005256!1.21e-09!143;UBERON:0003914!1.68e-09!118;UBERON:0004872!1.10e-08!84;UBERON:0000914!6.41e-08!83;UBERON:0002329!6.41e-08!83;UBERON:0003077!6.41e-08!83;UBERON:0003059!6.41e-08!83;UBERON:0007282!6.41e-08!83;UBERON:0009618!6.41e-08!83;UBERON:0007285!6.41e-08!83;UBERON:0002049!1.01e-07!79;UBERON:0007798!1.01e-07!79;UBERON:0004290!1.06e-07!70;UBERON:0001981!1.98e-07!60;UBERON:0007500!1.98e-07!60;UBERON:0004537!1.98e-07!60;UBERON:0006965!1.98e-07!60;UBERON:0000055!2.85e-07!69;UBERON:0000926!3.41e-07!448;UBERON:0004120!3.41e-07!448;UBERON:0006603!3.41e-07!448;UBERON:0000486!3.49e-07!82;UBERON:0001637!4.04e-07!42;UBERON:0003509!4.04e-07!42;UBERON:0004572!4.04e-07!42;UBERON:0004535!6.18e-07!110;UBERON:0000490!9.17e-07!138;UBERON:0001009!9.48e-07!113 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,1.89e-12,78;UBERON:0005256,4.07e-10,122;UBERON:0002329,2.87e-09,71;UBERON:0003059,2.87e-09,71;UBERON:0007282,2.87e-09,71;UBERON:0004290,2.87e-09,71;UBERON:0009618,2.87e-09,71;UBERON:0003914,3.89e-09,117;UBERON:0004872,5.04e-09,83;UBERON:0003077,5.45e-09,72;UBERON:0007285,5.45e-09,72;UBERON:0000486,6.06e-09,83;UBERON:0007524,1.01e-08,73;UBERON:0000490,1.59e-08,148;UBERON:0003104,1.74e-07,160;UBERON:0009142,1.74e-07,160;UBERON:0001637,4.58e-07,42;UBERON:0003509,4.58e-07,42;UBERON:0004572,4.58e-07,42;UBERON:0000926,6.14e-07,315;UBERON:0004120,6.14e-07,315;UBERON:0006603,6.14e-07,315;UBERON:0002067,7.39e-07,9;UBERON:0004016,7.39e-07,9;UBERON:0010083,7.39e-07,9 | |||
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| |||
|short_description=p16@ARHGDIA | |||
}} |
Latest revision as of 08:57, 18 September 2015
Short description: | p16@ARHGDIA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_16_at_ARHGDIA_5end |
Coexpression cluster: | C2444_Alveolar_Endothelial_Smooth_leiomyoma_Preadipocyte_Hair_Renal |
Association with transcript: | 151bp_to_BC007630_5end |
EntrezGene: | ARHGDIA |
HGNC: | 678 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 3.88e-09 | 121 |
embryonic cell | 6.37e-08 | 250 |
muscle cell | 8.31e-07 | 55 |
multi fate stem cell | 8.89e-07 | 427 |
muscle precursor cell | 9.99e-07 | 58 |
myoblast | 9.99e-07 | 58 |
multi-potent skeletal muscle stem cell | 9.99e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
epithelial vesicle | 1.89e-12 | 78 |
trunk mesenchyme | 4.07e-10 | 122 |
somite | 2.87e-09 | 71 |
presomitic mesoderm | 2.87e-09 | 71 |
presumptive segmental plate | 2.87e-09 | 71 |
dermomyotome | 2.87e-09 | 71 |
trunk paraxial mesoderm | 2.87e-09 | 71 |
epithelial tube | 3.89e-09 | 117 |
splanchnic layer of lateral plate mesoderm | 5.04e-09 | 83 |
paraxial mesoderm | 5.45e-09 | 72 |
presumptive paraxial mesoderm | 5.45e-09 | 72 |
multilaminar epithelium | 6.06e-09 | 83 |
dense mesenchyme tissue | 1.01e-08 | 73 |
unilaminar epithelium | 1.59e-08 | 148 |
mesenchyme | 1.74e-07 | 160 |
entire embryonic mesenchyme | 1.74e-07 | 160 |
artery | 4.58e-07 | 42 |
arterial blood vessel | 4.58e-07 | 42 |
arterial system | 4.58e-07 | 42 |
mesoderm | 6.14e-07 | 315 |
mesoderm-derived structure | 6.14e-07 | 315 |
presumptive mesoderm | 6.14e-07 | 315 |
dermis | 7.39e-07 | 9 |
dermatome | 7.39e-07 | 9 |
future dermis | 7.39e-07 | 9 |