FFCP PHASE1:Hg19::chr17:79826305..79826324,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr17:79826305..79826324,- to FFCP PHASE1:Hg19::chr17:79826305..79826324,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=396 | |EntrezGene=396 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=678 | |HGNC=678 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=174bp_to_BC007630_5end | |||
|cluster_id=chr17:79826305..79826324,- | |||
|coexpression_cluster_id=C2444 | |||
|description=CAGE_peak_2_at_ARHGDIA_5end | |||
|id=chr17:79826305..79826324,- | |||
|ontology_enrichment_celltype=CL:0002371!1.83e-22!591;CL:0000144!3.03e-21!625;CL:0000548!3.64e-20!679;CL:0000004!3.64e-20!679;CL:0000255!3.64e-20!679;CL:0000012!4.68e-19!682;CL:0000003!1.03e-15!722;CL:0000055!8.74e-15!180;CL:0000220!1.16e-12!246;CL:0002321!1.58e-12!248;CL:0000222!1.65e-11!119;CL:0000063!2.85e-10!578;CL:0000057!5.52e-09!75;CL:0000723!4.25e-08!436;CL:0000183!5.75e-08!59;CL:0000034!1.31e-07!444;CL:0000680!2.53e-07!57;CL:0000056!2.53e-07!57;CL:0000355!2.53e-07!57;CL:0000048!2.56e-07!430;CL:0000393!2.71e-07!60;CL:0000211!2.71e-07!60 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,5.80e-13,250;CL:0000222,4.77e-12,121;CL:0000057,5.19e-09,76;CL:0000723,4.62e-08,433;CL:0000034,1.33e-07,441;CL:0000680,1.39e-07,58;CL:0000056,1.39e-07,58;CL:0000355,1.39e-07,58;CL:0000393,1.50e-07,61;CL:0000211,1.50e-07,61;CL:0000048,2.77e-07,427;CL:0000187,5.57e-07,55 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!1.56e-08!83;UBERON:0002329!1.56e-08!83;UBERON:0003077!1.56e-08!83;UBERON:0003059!1.56e-08!83;UBERON:0007282!1.56e-08!83;UBERON:0009618!1.56e-08!83;UBERON:0007285!1.56e-08!83;UBERON:0005256!2.22e-08!143;UBERON:0003914!3.67e-08!118;UBERON:0001981!6.12e-08!60;UBERON:0007500!6.12e-08!60;UBERON:0004537!6.12e-08!60;UBERON:0006965!6.12e-08!60;UBERON:0004872!7.21e-08!84;UBERON:0002049!1.09e-07!79;UBERON:0007798!1.09e-07!79;UBERON:0004290!1.52e-07!70;UBERON:0000926!2.09e-07!448;UBERON:0004120!2.09e-07!448;UBERON:0006603!2.09e-07!448;UBERON:0000055!4.05e-07!69;UBERON:0000486!4.15e-07!82 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,7.59e-10,78;UBERON:0000926,1.40e-08,315;UBERON:0004120,1.40e-08,315;UBERON:0006603,1.40e-08,315;UBERON:0003914,4.25e-08,117;UBERON:0007524,5.66e-08,73;UBERON:0007500,6.24e-08,59;UBERON:0001981,6.24e-08,59;UBERON:0004537,6.24e-08,59;UBERON:0006965,6.24e-08,59;UBERON:0004872,6.73e-08,83;UBERON:0002329,8.29e-08,71;UBERON:0003059,8.29e-08,71;UBERON:0007282,8.29e-08,71;UBERON:0004290,8.29e-08,71;UBERON:0009618,8.29e-08,71;UBERON:0000490,8.72e-08,148;UBERON:0003077,9.11e-08,72;UBERON:0007285,9.11e-08,72;UBERON:0002049,1.31e-07,78;UBERON:0007798,1.31e-07,78;UBERON:0000486,2.35e-07,83;UBERON:0000055,4.90e-07,68 | |||
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| ||
|short_description=p2@ARHGDIA | |||
}} | }} |
Latest revision as of 08:56, 18 September 2015
Short description: | p2@ARHGDIA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_ARHGDIA_5end |
Coexpression cluster: | C2444_Alveolar_Endothelial_Smooth_leiomyoma_Preadipocyte_Hair_Renal |
Association with transcript: | 174bp_to_BC007630_5end |
EntrezGene: | ARHGDIA |
HGNC: | 678 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 5.80e-13 | 250 |
mesodermal cell | 4.77e-12 | 121 |
fibroblast | 5.19e-09 | 76 |
somatic stem cell | 4.62e-08 | 433 |
stem cell | 1.33e-07 | 441 |
muscle precursor cell | 1.39e-07 | 58 |
myoblast | 1.39e-07 | 58 |
multi-potent skeletal muscle stem cell | 1.39e-07 | 58 |
electrically responsive cell | 1.50e-07 | 61 |
electrically active cell | 1.50e-07 | 61 |
multi fate stem cell | 2.77e-07 | 427 |
muscle cell | 5.57e-07 | 55 |
Ontology term | p-value | n |
---|---|---|
epithelial vesicle | 7.59e-10 | 78 |
mesoderm | 1.40e-08 | 315 |
mesoderm-derived structure | 1.40e-08 | 315 |
presumptive mesoderm | 1.40e-08 | 315 |
epithelial tube | 4.25e-08 | 117 |
dense mesenchyme tissue | 5.66e-08 | 73 |
epithelial tube open at both ends | 6.24e-08 | 59 |
blood vessel | 6.24e-08 | 59 |
blood vasculature | 6.24e-08 | 59 |
vascular cord | 6.24e-08 | 59 |
splanchnic layer of lateral plate mesoderm | 6.73e-08 | 83 |
somite | 8.29e-08 | 71 |
presomitic mesoderm | 8.29e-08 | 71 |
presumptive segmental plate | 8.29e-08 | 71 |
dermomyotome | 8.29e-08 | 71 |
trunk paraxial mesoderm | 8.29e-08 | 71 |
unilaminar epithelium | 8.72e-08 | 148 |
paraxial mesoderm | 9.11e-08 | 72 |
presumptive paraxial mesoderm | 9.11e-08 | 72 |
vasculature | 1.31e-07 | 78 |
vascular system | 1.31e-07 | 78 |
multilaminar epithelium | 2.35e-07 | 83 |
vessel | 4.90e-07 | 68 |