FFCP PHASE1:Hg19::chr19:4279450..4279459,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=56961 | |EntrezGene=56961 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30633 | |HGNC=30633 | ||
|TSSclassifier=strong | |||
|UniProt=Q96IW2 | |UniProt=Q96IW2 | ||
|association_with_transcript=-199bp_to_AK055673_5end | |association_with_transcript=-199bp_to_AK055673_5end | ||
|cluster_id=chr19:4279450..4279459,+ | |||
|coexpression_cluster_id=C1241 | |||
|description=CAGE_peak_8_at_SHD_5end | |description=CAGE_peak_8_at_SHD_5end | ||
|id=chr19:4279450..4279459,+ | |id=chr19:4279450..4279459,+ | ||
|ontology_enrichment_celltype=CL:0000784!6.99e-13!3;CL:0000188!7.53e-07!9 | |ontology_enrichment_celltype=CL:0000784!6.99e-13!3;CL:0000188!7.53e-07!9 | ||
|ontology_enrichment_celltype_v019=CL:0000784;8.02e-44;3!CL:0000333;4.11e-26;5!CL:0000451;1.82e-12;10!CL:0002321;3.96e-09;15!CL:0002575;2.40e-08;2!CL:0000188;3.09e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000784,8.03e-44,3;CL:0000451,1.82e-12,10;CL:0002575,3.08e-08,2;CL:0000188,2.95e-07,9 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:169;6.93e-22;6!DOID:171;2.11e-13;10!DOID:3095;1.36e-10;22!DOID:2994;1.36e-10;22 | |||
|ontology_enrichment_disease_v019_2=DOID:169,6.70e-22,6;DOID:171,2.07e-13,10;DOID:3095,1.23e-10,22;DOID:2994,1.23e-10,22 | |||
|ontology_enrichment_uberon=UBERON:0001950!3.59e-26!20;UBERON:0001893!2.50e-25!34;UBERON:0001049!5.21e-24!57;UBERON:0005068!5.21e-24!57;UBERON:0006241!5.21e-24!57;UBERON:0007135!5.21e-24!57;UBERON:0001869!5.34e-24!32;UBERON:0000073!6.43e-24!94;UBERON:0001016!6.43e-24!94;UBERON:0002619!1.24e-23!22;UBERON:0002791!5.36e-23!33;UBERON:0002780!5.76e-23!41;UBERON:0001890!5.76e-23!41;UBERON:0006240!5.76e-23!41;UBERON:0003080!2.50e-22!42;UBERON:0001017!4.74e-22!82;UBERON:0005743!9.38e-21!86;UBERON:0002616!1.08e-20!59;UBERON:0000956!1.46e-20!25;UBERON:0000203!1.46e-20!25;UBERON:0002020!1.65e-19!34;UBERON:0003528!1.65e-19!34;UBERON:0000955!1.28e-18!69;UBERON:0006238!1.28e-18!69;UBERON:0003075!1.90e-17!86;UBERON:0007284!1.90e-17!86;UBERON:0002346!2.02e-16!90;UBERON:0000200!1.51e-14!6;UBERON:0003056!3.75e-14!61;UBERON:0007023!8.43e-12!115;UBERON:0004121!1.90e-11!169;UBERON:0000924!4.98e-11!173;UBERON:0006601!4.98e-11!173;UBERON:0001871!6.97e-11!7;UBERON:0002771!9.28e-11!3;UBERON:0000033!2.40e-08!123;UBERON:0002360!2.91e-08!2;UBERON:0000094!2.91e-08!2;UBERON:0007645!2.91e-08!2;UBERON:0000013!9.58e-08!5;UBERON:0002410!9.58e-08!5;UBERON:0000153!9.64e-08!129;UBERON:0007811!9.64e-08!129;UBERON:0001872!3.12e-07!5;UBERON:0002021!3.79e-07!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0000013;4.11e-26;5!UBERON:0002410;4.11e-26;5!UBERON:0000010;8.07e-15;8!UBERON:0002360;2.40e-08;2!UBERON:0000094;2.40e-08;2!UBERON:0010743;2.40e-08;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000013,3.94e-26,5;UBERON:0002410,3.94e-26,5;UBERON:0000010,7.89e-15,8;UBERON:0002360,2.87e-08,2;UBERON:0000094,2.87e-08,2;UBERON:0010743,2.87e-08,2 | |||
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| ||
|short_description=p8@SHD | |short_description=p8@SHD | ||
}} | }} |
Latest revision as of 08:41, 18 September 2015
Short description: | p8@SHD |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_SHD_5end |
Coexpression cluster: | C1241_neuroblastoma_small_Skeletal_Dendritic_Pericytes_merkel_mesenchymal |
Association with transcript: | -199bp_to_AK055673_5end |
EntrezGene: | SHD |
HGNC: | 30633 |
UniProt: | Q96IW2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
plasmacytoid dendritic cell | 8.03e-44 | 3 |
dendritic cell | 1.82e-12 | 10 |
central nervous system pericyte | 3.08e-08 | 2 |
cell of skeletal muscle | 2.95e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
sympathetic nervous system | 3.94e-26 | 5 |
autonomic nervous system | 3.94e-26 | 5 |
peripheral nervous system | 7.89e-15 | 8 |
meninx | 2.87e-08 | 2 |
membrane organ | 2.87e-08 | 2 |
meningeal cluster | 2.87e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
neuroendocrine tumor | 6.70e-22 | 6 |
neuroectodermal tumor | 2.07e-13 | 10 |
germ cell and embryonal cancer | 1.23e-10 | 22 |
germ cell cancer | 1.23e-10 | 22 |