FFCP PHASE1:Hg19::chr1:163038648..163038667,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:163038648..163038667,+ to FFCP PHASE1:Hg19::chr1:163038648..163038667,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5999 | |EntrezGene=5999 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10000 | |HGNC=10000 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-57bp_to_ENST00000527393_5end | |||
|cluster_id=chr1:163038648..163038667,+ | |||
|coexpression_cluster_id=C3897 | |||
|description=CAGE_peak_3_at_RGS4_5end | |||
|id=chr1:163038648..163038667,+ | |||
|ontology_enrichment_celltype=CL:0000359!3.82e-16!32;CL:0000680!5.15e-13!57;CL:0000056!5.15e-13!57;CL:0000355!5.15e-13!57;CL:0000192!9.56e-13!42;CL:0000514!9.56e-13!42;CL:0000183!4.09e-12!59;CL:0000187!1.06e-11!54;CL:0000393!1.86e-09!60;CL:0000211!1.86e-09!60;CL:0000222!9.76e-09!119 | |||
|ontology_enrichment_celltype_v019=CL:0000359;1.75e-14;32!CL:0000192;1.40e-07;43!CL:0002589;7.29e-07;2!CL:0002593;7.29e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000359,4.05e-15,32;CL:0000192,2.12e-10,43;CL:0000514,2.12e-10,43;CL:0000680,5.68e-08,58;CL:0000056,5.68e-08,58;CL:0000355,5.68e-08,58;CL:0000187,1.91e-07,55;CL:0002589,5.93e-07,2;CL:0002593,9.27e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000514;1.40e-07;43 | |||
|ontology_enrichment_disease=DOID:2394!3.50e-11!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;9.96e-16;14!DOID:193;3.42e-10;29!DOID:120;3.29e-09;27 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,6.91e-16,14;DOID:193,2.87e-10,29;DOID:120,2.68e-09,27 | |||
|ontology_enrichment_uberon=UBERON:0002616!1.36e-18!59;UBERON:0000955!4.92e-17!69;UBERON:0006238!4.92e-17!69;UBERON:0001049!4.30e-16!57;UBERON:0005068!4.30e-16!57;UBERON:0006241!4.30e-16!57;UBERON:0007135!4.30e-16!57;UBERON:0000073!7.27e-15!94;UBERON:0001016!7.27e-15!94;UBERON:0001637!1.32e-14!42;UBERON:0003509!1.32e-14!42;UBERON:0004572!1.32e-14!42;UBERON:0005743!1.69e-14!86;UBERON:0000025!2.11e-14!194;UBERON:0001017!2.18e-14!82;UBERON:0002780!4.57e-14!41;UBERON:0001890!4.57e-14!41;UBERON:0006240!4.57e-14!41;UBERON:0000119!4.89e-14!312;UBERON:0000483!1.62e-13!309;UBERON:0003080!1.72e-13!42;UBERON:0002619!1.46e-12!22;UBERON:0004573!1.77e-12!33;UBERON:0004571!1.77e-12!33;UBERON:0001869!1.80e-12!32;UBERON:0003075!3.62e-12!86;UBERON:0007284!3.62e-12!86;UBERON:0001893!3.72e-12!34;UBERON:0002020!4.17e-12!34;UBERON:0003528!4.17e-12!34;UBERON:0001134!2.24e-11!61;UBERON:0002036!2.24e-11!61;UBERON:0003082!2.24e-11!61;UBERON:0002791!2.49e-11!33;UBERON:0001950!2.64e-11!20;UBERON:0002346!5.51e-11!90;UBERON:0004111!6.34e-11!241;UBERON:0000475!8.70e-11!365;UBERON:0001981!1.18e-10!60;UBERON:0007500!1.18e-10!60;UBERON:0004537!1.18e-10!60;UBERON:0006965!1.18e-10!60;UBERON:0002385!1.20e-10!63;UBERON:0001015!1.20e-10!63;UBERON:0000383!1.20e-10!63;UBERON:0004290!1.40e-10!70;UBERON:0000914!2.35e-10!83;UBERON:0002329!2.35e-10!83;UBERON:0003077!2.35e-10!83;UBERON:0003059!2.35e-10!83;UBERON:0007282!2.35e-10!83;UBERON:0009618!2.35e-10!83;UBERON:0007285!2.35e-10!83;UBERON:0000956!2.49e-10!25;UBERON:0000203!2.49e-10!25;UBERON:0000477!9.23e-10!286;UBERON:0002049!9.64e-10!79;UBERON:0007798!9.64e-10!79;UBERON:0003056!1.26e-09!61;UBERON:0000033!1.33e-09!123;UBERON:0004872!3.70e-09!84;UBERON:0000486!6.24e-09!82;UBERON:0000153!6.79e-09!129;UBERON:0007811!6.79e-09!129;UBERON:0000055!1.81e-08!69;UBERON:0004121!4.82e-08!169;UBERON:0000481!6.45e-08!347;UBERON:0000200!1.12e-07!6;UBERON:0000924!1.83e-07!173;UBERON:0006601!1.83e-07!173;UBERON:0004535!7.68e-07!110 | |||
|ontology_enrichment_uberon_v019=UBERON:0001950;2.36e-25;20!UBERON:0002619;7.75e-23;22!UBERON:0000956;8.59e-20;25!UBERON:0000203;8.59e-20;25!UBERON:0001869;1.46e-19;32!UBERON:0000200;2.48e-18;6!UBERON:0001893;2.86e-18;34!UBERON:0002791;2.27e-17;32!UBERON:0003528;7.31e-16;34!UBERON:0002020;7.31e-16;34!UBERON:0002780;3.95e-13;41!UBERON:0001890;3.95e-13;41!UBERON:0004573;2.88e-10;33!UBERON:0004571;2.88e-10;33!UBERON:0001870;3.24e-10;3!UBERON:0000073;1.85e-09;53!UBERON:0002616;1.85e-09;53!UBERON:0001637;6.62e-09;42!UBERON:0003509;6.62e-09;42!UBERON:0004572;6.62e-09;42!UBERON:0002771;3.12e-07;2!UBERON:0002702;3.12e-07;2!UBERON:0000955;3.88e-07;68!UBERON:0001871;4.21e-07;6!UBERON:0001529;7.29e-07;2!UBERON:0002456;7.29e-07;2!UBERON:0007204;7.29e-07;2!UBERON:0001017;7.86e-07;75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001950,1.48e-25,20;UBERON:0002619,5.07e-23,22;UBERON:0001869,1.16e-22,32;UBERON:0001893,4.16e-21,34;UBERON:0000956,5.94e-20,25;UBERON:0000203,5.94e-20,25;UBERON:0002791,8.11e-20,32;UBERON:0002780,6.08e-19,41;UBERON:0001890,6.08e-19,41;UBERON:0003080,6.08e-19,41;UBERON:0006240,6.08e-19,41;UBERON:0000200,1.21e-18,6;UBERON:0003528,1.90e-18,34;UBERON:0002020,1.90e-18,34;UBERON:0000073,2.02e-15,53;UBERON:0002616,2.02e-15,53;UBERON:0000955,5.58e-15,68;UBERON:0006238,5.58e-15,68;UBERON:0001049,2.37e-14,56;UBERON:0005068,2.37e-14,56;UBERON:0006241,2.37e-14,56;UBERON:0007135,2.37e-14,56;UBERON:0001016,8.00e-14,89;UBERON:0001017,4.03e-13,81;UBERON:0001637,1.65e-12,42;UBERON:0003509,1.65e-12,42;UBERON:0004572,1.65e-12,42;UBERON:0004573,3.24e-12,33;UBERON:0004571,3.24e-12,33;UBERON:0003056,2.38e-11,61;UBERON:0001870,2.62e-10,3;UBERON:0000025,2.47e-09,192;UBERON:0003075,2.13e-08,82;UBERON:0007284,2.13e-08,82;UBERON:0007500,6.74e-08,59;UBERON:0001981,6.74e-08,59;UBERON:0004537,6.74e-08,59;UBERON:0006965,6.74e-08,59;UBERON:0002346,8.27e-08,86;UBERON:0002702,2.53e-07,2;UBERON:0001134,3.03e-07,62;UBERON:0002036,3.03e-07,62;UBERON:0003082,3.03e-07,62;UBERON:0002771,3.14e-07,2;UBERON:0001871,3.42e-07,6;UBERON:0001529,5.93e-07,2;UBERON:0007204,5.93e-07,2;UBERON:0002385,6.44e-07,64;UBERON:0001015,6.44e-07,64;UBERON:0000383,6.44e-07,64;UBERON:0002049,7.20e-07,78;UBERON:0007798,7.20e-07,78;UBERON:0002456,9.27e-07,2;UBERON:0003077,9.94e-07,72;UBERON:0007285,9.94e-07,72 | |||
|phase1_expression=0.726713517082227,0.214100523890983,0.422863212287913,0,0.446961094427288,0,0,0,0,0,0,0,0,0,0.331397375727916,1.34465029290355,2.41077811209591,0.730310090387373,0,0,0.612002073732759,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,0.189069634328136,0,0,0.589405839739707,0,0,0,0,0,0,0,0,0.198762407366705,0.860234595106124,0.347140501607594,0.56530794192401,0,0,0.417989933073621,0.258416759169329,0,0,0,0,0,0,0,0.17859945656816,0,0.337834441449967,0,0,0,0,0,0,0.496971951695318,2.40597972162702,1.19168262731897,0,0,0,0,0,0.622422070799533,0.538842688278752,0,0.151357427644931,1.15235184896,0,0.312160076830321,0,0.298897361103602,0,0,0,0.204154171254893,0,0.103325781175765,0,0,0,0,0,0,0.277064115484183,0,0,0,0.680593098960126,0.179389635688862,0,0,0,0.206105058476878,0,0,0,0.292311015483596,0,0.184099797284599,0.484938170456436,0,0.302256294682921,0.508681776931463,0.193260853163297,0,0,0,0,0,0,0,0,0,0.643240938192885,0,0.464367928031979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343135620597051,0.219500570817251,0,0.100528972411631,0,0,0,0,0,0.352226082707465,0,0,0,0,0,0,0,0,0,0.503946384596579,0.567100388969546,0,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0.336393253036082,0,0.51336800074665,0.775630294546667,0,0,0.531876233169741,0,0,0,0,0.285955987316295,0.542621605391443,0,0.325736184293735,0,0.791951872933429,6.02878754119172,3.48613383440118,5.59848750619519,0,0,0,1.67737398844108,0,0,1.01346914667305,0.205476322550383,0.179060963239896,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0.12269149171914,0,0,0.207970861530807,0,0,0.819989904948992,0,0,0,1.32845119707087,0.368738337083406,0.260650843404249,0.195801157462741,0,0,0,0,0,0,0,0,0,0.280660094433074,0.384417447767103,0,0.160853921143607,1.48418066444991,0.154209693802656,0.532685175939381,0.164254312027618,1.03850885836724,0,0,0,0.184161977871793,0.114814448164607,0.182091168006717,0,0,0.231046011313244,0,0,0,0,0,0.215915916102139,0,0.270946437543853,0.501689773854853,0,0,0,0,0,0,0.656029291399411,0,0.103041011647722,0,0,0,0,1.6068392984416,0,0.154048617114644,0.15350367472613,0,0.107420244868274,0,0.170453254832202,0.0890320356467374,0,0,0,0.10115778085555,0,0.31481234683064,0,2.7723022215848,4.25844824253617,0.869932992075073,1.8532421910392,2.14687330112987,1.116475108079,0,0.571890581771475,0,0.42793898803392,0.636406495851874,2.35484592059769,0,0,0.117812402345686,1.61745985258653,0,0.842516912477962,0,2.68084838594413,1.05650146756755,0.136499911407986,0,0,0.551365343546124,0.66343897524122,1.31535265576129,0,0.655894752046633,3.24656603140326,0.30982349809975,0.563391205064483,0.286822704408103,0.392996164052485,6.4200789266625,0,0.211107635297664,0,0,0,0,0,0,0,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121360521749513,0,0,0.71623345421307,0,0.921482106297696,0.994147647766298,1.40669416410513,0.111308705022906,0,0,0,0,4.78672220923124,0,0,0,0,0,0,0,0,1.11136990144637,0.969332746095218,2.04089815956073,0,0,0,0,0,0,0,0,0,0,0,1.4471572635049,0,0.110579259931225,0.295547618953547,2.63262476584767,0,0,0,0,0,0,0,0.31900115973192,0.915975934018623,1.06606955203727,0,0,0,0,0,0,0,0,0,0,0,0.216388639742091,0,0.176915129006678,0,0,0,0,0.134802265961354,0,1.1713222286267,0,0,4.12726645207958,0,0,0,0,0,0,0,0,0,0,0,0.277349346026277,0,0,0,0,0,0,0,0,0.290967049465258,0,0,0,0,3.41878298161745,0,0.0801588202515337,0,0,0,0,0,0,0,0,0.135904206073614,0.104602846312333,0,0,0,0.273810757783986,0,1.28929632425987,0,0.279282401272254,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795229689809303,0.408610218334727,0,0,0,0,0,3.21972650287531,0,0,0.0524545881349981,0,0,0,0,0,0,1.08599920350743,2.5926644736038,0.653174720218818,0,0,0.170388021785422,0,0,0,0.517131825446202,0.39669780522807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.65820453990096,2.68457782784319,2.6290095448365,0.573409195690071,0.887432412294818,0.434674820589684,0,0,0,0,0,0,0.144921028610825,0.447764408660622,0,1.10961172300523,0.378806010550178,0.251567901752575,0.889811221596536,0.228840068396924,0.907385542579434,0.466311601748341,0.295710299979268,0.955780602982214,2.24901556081802,0.310525913752519,2.48823724704513,2.12673371646396,1.5652351854352,1.80309130796662,5.71207818253193,2.44122439922797,0.181848659202559,1.71856891267982,0.928067519756987,1.59238355479446,0,0,0,0,0,0,0.260994291965212,0,0.463044948647668,0,0,0.308801447160972,0,0.353378291891762,0,0,0,0,0,2.21213497842769,0,0,0,0,0,0,0,0,0,1.70254786070051,0,0,0,0,3.66604358748718,0.157265941855896,0,0,0,0,0,0,0,0,0,0,2.44071055366546,0,1.11743701340006,2.05116364240755,0,2.14387482639075,1.77623210195036,0,0,0,0,0,0,0,0,0,0,0,0,0.49131575253029,0,2.97165372320936,0.781078098613847,1.86018116851066,2.98054307911362,0,0,0,0,0,0,0,0.606965604236632,0.455324382702595,0,0,0.685952037749674,1.69924332442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| ||
|short_description=p3@RGS4 | |||
}} | }} |
Latest revision as of 07:51, 18 September 2015
Short description: | p3@RGS4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_RGS4_5end |
Coexpression cluster: | C3897_Mesothelial_Multipotent_mesenchymal_Fibroblast_argyrophil_medial_leiomyoma |
Association with transcript: | -57bp_to_ENST00000527393_5end |
EntrezGene: | RGS4 |
HGNC: | 10000 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vascular associated smooth muscle cell | 4.05e-15 | 32 |
smooth muscle cell | 2.12e-10 | 43 |
smooth muscle myoblast | 2.12e-10 | 43 |
muscle precursor cell | 5.68e-08 | 58 |
myoblast | 5.68e-08 | 58 |
multi-potent skeletal muscle stem cell | 5.68e-08 | 58 |
muscle cell | 1.91e-07 | 55 |
smooth muscle cell of the brachiocephalic vasculature | 5.93e-07 | 2 |
smooth muscle cell of the internal thoracic artery | 9.27e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 6.91e-16 | 14 |
reproductive organ cancer | 2.87e-10 | 29 |
female reproductive organ cancer | 2.68e-09 | 27 |