FFCP PHASE1:Hg19::chr6:33387830..33387860,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8831 | |EntrezGene=8831 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11497 | |HGNC=11497 | ||
|TSSclassifier=strong | |||
|UniProt=Q96PV0 | |UniProt=Q96PV0 | ||
|association_with_transcript=0bp_to_ENST00000293748,ENST00000479510,NM_006772,uc003oeo.1,uc010juy.2,uc011dri.1_5end | |association_with_transcript=0bp_to_ENST00000293748,ENST00000479510,NM_006772,uc003oeo.1,uc010juy.2,uc011dri.1_5end | ||
|cluster_id=chr6:33387830..33387860,+ | |||
|coexpression_cluster_id=C3 | |coexpression_cluster_id=C3 | ||
|description=CAGE_peak_2_at_SYNGAP1_5end | |description=CAGE_peak_2_at_SYNGAP1_5end | ||
|id=chr6:33387830..33387860,+ | |id=chr6:33387830..33387860,+ | ||
|ontology_enrichment_celltype=CL:0002319;8.94e-10;25 | |ontology_enrichment_celltype=CL:0002319!4.43e-09!25;CL:0000133!6.17e-09!59;CL:0000055!4.94e-07!180 | ||
| | |ontology_enrichment_celltype_v019=CL:0002319;8.94e-10;25 | ||
|ontology_enrichment_celltype_v019_2=CL:0002319,6.55e-10,25;CL:0000133,8.10e-10,59 | |||
|ontology_enrichment_development_v019=UBERON:0006601;4.78e-09;82 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_uberon=UBERON:0001869;1.05e-21;32!UBERON:0002780;3.21e-21;41!UBERON:0001890;3.21e-21;41!UBERON:0003528;3.49e-21;34!UBERON:0002020;3.49e-21;34!UBERON:0001893;5.35e-21;34!UBERON:0002791;5.58e-21;32!UBERON:0000073;3.76e-20;53!UBERON:0002616;3.76e-20;53!UBERON:0002619;3.21e-19;22!UBERON:0000956;1.06e-18;25!UBERON:0000203;1.06e-18;25!UBERON:0001950;1.37e-17;20!UBERON:0001017;2.90e-17;75!UBERON:0000955;7.66e-16;68!UBERON:0001016;1.41e-15;83!UBERON:0004732;7.06e-08;13!UBERON:0004733;1.32e-07;12!UBERON:0002028;1.32e-07;12!UBERON:0002420;2.00e-07;9!UBERON:0007245;2.00e-07;9!UBERON:0010009;2.00e-07;9!UBERON:0010011;2.00e-07;9!UBERON:0000454;2.00e-07;9!UBERON:0000125;3.58e-07;9!UBERON:0002308;3.58e-07;9 | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.53e-40!94;UBERON:0001016!1.53e-40!94;UBERON:0001017!3.03e-39!82;UBERON:0005743!1.32e-38!86;UBERON:0000955!8.71e-33!69;UBERON:0006238!8.71e-33!69;UBERON:0001049!9.26e-32!57;UBERON:0005068!9.26e-32!57;UBERON:0006241!9.26e-32!57;UBERON:0007135!9.26e-32!57;UBERON:0002346!4.40e-30!90;UBERON:0002616!7.06e-29!59;UBERON:0003075!9.20e-29!86;UBERON:0007284!9.20e-29!86;UBERON:0002780!7.29e-25!41;UBERON:0001890!7.29e-25!41;UBERON:0006240!7.29e-25!41;UBERON:0003080!9.03e-25!42;UBERON:0000924!1.15e-24!173;UBERON:0006601!1.15e-24!173;UBERON:0004121!2.09e-23!169;UBERON:0003056!3.62e-22!61;UBERON:0002020!9.33e-21!34;UBERON:0003528!9.33e-21!34;UBERON:0001893!1.45e-20!34;UBERON:0001869!3.52e-20!32;UBERON:0002791!6.23e-20!33;UBERON:0000033!7.58e-20!123;UBERON:0000153!4.27e-19!129;UBERON:0007811!4.27e-19!129;UBERON:0007023!7.07e-19!115;UBERON:0002619!2.67e-16!22;UBERON:0000956!8.25e-16!25;UBERON:0000203!8.25e-16!25;UBERON:0001950!6.08e-15!20;UBERON:0003076!4.02e-08!15;UBERON:0003057!4.02e-08!15;UBERON:0000475!4.88e-08!365;UBERON:0000025!2.98e-07!194;UBERON:0004732!5.45e-07!13 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;1.05e-21;32!UBERON:0002780;3.21e-21;41!UBERON:0001890;3.21e-21;41!UBERON:0003528;3.49e-21;34!UBERON:0002020;3.49e-21;34!UBERON:0001893;5.35e-21;34!UBERON:0002791;5.58e-21;32!UBERON:0000073;3.76e-20;53!UBERON:0002616;3.76e-20;53!UBERON:0002619;3.21e-19;22!UBERON:0000956;1.06e-18;25!UBERON:0000203;1.06e-18;25!UBERON:0001950;1.37e-17;20!UBERON:0001017;2.90e-17;75!UBERON:0000955;7.66e-16;68!UBERON:0001016;1.41e-15;83!UBERON:0004732;7.06e-08;13!UBERON:0004733;1.32e-07;12!UBERON:0002028;1.32e-07;12!UBERON:0002420;2.00e-07;9!UBERON:0007245;2.00e-07;9!UBERON:0010009;2.00e-07;9!UBERON:0010011;2.00e-07;9!UBERON:0000454;2.00e-07;9!UBERON:0000125;3.58e-07;9!UBERON:0002308;3.58e-07;9 | |||
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| ||
|short_description=p2@SYNGAP1 | |short_description=p2@SYNGAP1 | ||
}} | }} |
Latest revision as of 07:29, 18 September 2015
Short description: | p2@SYNGAP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SYNGAP1_5end |
Coexpression cluster: | C3_occipital_temporal_insula_medial_postcentral_frontal_amygdala |
Association with transcript: | 0bp_to_ENST00000293748, ENST00000479510, NM_006772, uc003oeo.1, uc010juy.2, uc011dri.1_5end |
EntrezGene: | SYNGAP1 |
HGNC: | 11497 |
UniProt: | Q96PV0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 6.55e-10 | 25 |
neurectodermal cell | 8.10e-10 | 59 |