FFCP PHASE1:Hg19::chr4:68995571..68995593,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=389208 | |EntrezGene=389208 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29994 | |HGNC=29994 | ||
|TSSclassifier=strong | |||
|UniProt=Q6ZWK6 | |UniProt=Q6ZWK6 | ||
|association_with_transcript=0bp_to_NM_207407,uc003hdt.1_5end | |association_with_transcript=0bp_to_NM_207407,uc003hdt.1_5end | ||
|cluster_id=chr4:68995571..68995593,- | |||
|coexpression_cluster_id=C820 | |coexpression_cluster_id=C820 | ||
|description=CAGE_peak_1_at_TMPRSS11F_5end | |description=CAGE_peak_1_at_TMPRSS11F_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002076!2.76e-18!43;CL:0002251!5.05e-14!21;CL:0000223!1.97e-13!59;CL:0002621!1.03e-09!3;CL:0002368!2.52e-09!13;CL:0000622!2.77e-09!5;CL:0002623!3.68e-09!3;CL:0000154!9.91e-08!6;CL:0000150!1.64e-07!9;CL:0002159!5.41e-07!13;CL:0000066!6.21e-07!254 | |ontology_enrichment_celltype=CL:0002076!2.76e-18!43;CL:0002251!5.05e-14!21;CL:0000223!1.97e-13!59;CL:0002621!1.03e-09!3;CL:0002368!2.52e-09!13;CL:0000622!2.77e-09!5;CL:0002623!3.68e-09!3;CL:0000154!9.91e-08!6;CL:0000150!1.64e-07!9;CL:0002159!5.41e-07!13;CL:0000066!6.21e-07!254 | ||
|ontology_enrichment_celltype_v019=CL:0002621;1.67e-14;3!CL:0002537;5.95e-09;5!CL:0000197;1.74e-07;6!CL:0000098;1.74e-07;6!CL:0002167;1.74e-07;6 | |ontology_enrichment_celltype_v019=CL:0002621;1.67e-14;3!CL:0002537;5.95e-09;5!CL:0000197;1.74e-07;6!CL:0000098;1.74e-07;6!CL:0002167;1.74e-07;6 | ||
|ontology_enrichment_celltype_v019_2=CL:0002621,1.73e-14,3;CL:0002537,6.19e-09,5;CL:0000197,1.68e-07,6;CL:0000098,1.68e-07,6;CL:0002167,1.68e-07,6 | |||
|ontology_enrichment_development_v019=UBERON:0009143;9.57e-12;1!UBERON:0003124;4.67e-11;1 | |ontology_enrichment_development_v019=UBERON:0009143;9.57e-12;1!UBERON:0003124;4.67e-11;1 | ||
|ontology_enrichment_disease=DOID:1749!7.52e-09!14 | |ontology_enrichment_disease=DOID:1749!7.52e-09!14 | ||
|ontology_enrichment_disease_v019=DOID:178;2.54e-11;1!DOID:326;2.54e-11;1!DOID:3978;2.54e-11;1!DOID:3394;2.54e-11;1!DOID:5844;2.54e-11;1 | |ontology_enrichment_disease_v019=DOID:178;2.54e-11;1!DOID:326;2.54e-11;1!DOID:3978;2.54e-11;1!DOID:3394;2.54e-11;1!DOID:5844;2.54e-11;1 | ||
|ontology_enrichment_disease_v019_2=DOID:178,2.96e-11,1;DOID:326,2.96e-11,1;DOID:3978,2.96e-11,1;DOID:3394,2.96e-11,1;DOID:5844,2.96e-11,1 | |||
|ontology_enrichment_uberon=UBERON:0000166!3.06e-17!21;UBERON:0000165!1.78e-14!28;UBERON:0000930!1.78e-14!28;UBERON:0001004!2.85e-14!72;UBERON:0000161!1.60e-12!35;UBERON:0000974!2.87e-12!10;UBERON:0000344!2.20e-10!12;UBERON:0001444!8.27e-10!48;UBERON:0001949!1.03e-09!3;UBERON:0003729!4.17e-09!5;UBERON:0004119!3.39e-08!169;UBERON:0000925!3.39e-08!169;UBERON:0006595!3.39e-08!169;UBERON:0003102!1.22e-07!95;UBERON:0000065!7.12e-07!53;UBERON:0005631!8.18e-07!14;UBERON:0000158!8.18e-07!14;UBERON:0001042!8.47e-07!10;UBERON:0009145!8.47e-07!10;UBERON:0000341!9.89e-07!2 | |ontology_enrichment_uberon=UBERON:0000166!3.06e-17!21;UBERON:0000165!1.78e-14!28;UBERON:0000930!1.78e-14!28;UBERON:0001004!2.85e-14!72;UBERON:0000161!1.60e-12!35;UBERON:0000974!2.87e-12!10;UBERON:0000344!2.20e-10!12;UBERON:0001444!8.27e-10!48;UBERON:0001949!1.03e-09!3;UBERON:0003729!4.17e-09!5;UBERON:0004119!3.39e-08!169;UBERON:0000925!3.39e-08!169;UBERON:0006595!3.39e-08!169;UBERON:0003102!1.22e-07!95;UBERON:0000065!7.12e-07!53;UBERON:0005631!8.18e-07!14;UBERON:0000158!8.18e-07!14;UBERON:0001042!8.47e-07!10;UBERON:0009145!8.47e-07!10;UBERON:0000341!9.89e-07!2 | ||
|ontology_enrichment_uberon_v019=UBERON:0001949;1.67e-14;3!UBERON:0002372;1.31e-11;1!UBERON:0001961;1.31e-11;1!UBERON:0001744;1.31e-11;1!UBERON:0001042;1.31e-11;1!UBERON:0001735;1.31e-11;1!UBERON:0005795;2.54e-11;1!UBERON:0007029;2.54e-11;1!UBERON:0000165;5.77e-09;28!UBERON:0000161;9.54e-09;19!UBERON:0000166;9.54e-09;19!UBERON:0000002;1.01e-07;6!UBERON:0001560;1.01e-07;6 | |ontology_enrichment_uberon_v019=UBERON:0001949;1.67e-14;3!UBERON:0002372;1.31e-11;1!UBERON:0001961;1.31e-11;1!UBERON:0001744;1.31e-11;1!UBERON:0001042;1.31e-11;1!UBERON:0001735;1.31e-11;1!UBERON:0005795;2.54e-11;1!UBERON:0007029;2.54e-11;1!UBERON:0000165;5.77e-09;28!UBERON:0000161;9.54e-09;19!UBERON:0000166;9.54e-09;19!UBERON:0000002;1.01e-07;6!UBERON:0001560;1.01e-07;6 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001949,1.73e-14,3;UBERON:0002372,1.31e-11,1;UBERON:0001961,1.31e-11,1;UBERON:0001744,1.31e-11,1;UBERON:0001735,1.31e-11,1;UBERON:0000166,1.84e-11,22;UBERON:0007029,2.68e-11,1;UBERON:0000165,1.16e-08,29;UBERON:0000930,1.16e-08,29;UBERON:0000002,9.26e-08,6;UBERON:0001560,9.26e-08,6;UBERON:0005795,1.63e-07,22;UBERON:0000161,6.07e-07,36;UBERON:0005631,6.17e-07,14;UBERON:0000158,6.17e-07,14 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.919421224478927,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.728590576585084,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.02478218224572,3.00020732649918,0.573609190778008,0.243947412259191,0,0.116193942869518,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245976877086227,0,0.329250856225877,0,0.201057944823262,0.833296006426766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425325291727159,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.511707249066704,0,0,0,0,0,0,0,0,0,0.184161977871793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0.574265537996172,0,0,0,0,0,0,0,0,0,0,1.4875642382488,0.192190067365106,0.382838137483752,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.288666338176536,0,0,0.659006605437454,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.556812347790485,0,0,0,0,0,0,0,0,0,7.1623345421307,0.890894042497916,1.22864280839693,0,0,0,0.16480387422676,0,0,0,0,0,0,0,0.0898683511473268,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.1538995422883,2.84715956464049,0,0,0,0.325942115766024,0.638002319463839,0.0915975934018623,0,0,0,0,0,0,0,0.189753732724185,0.317873157960757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.40793459937668,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.1964690054889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2249738915515,0.77380195455795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.738832686744051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214441591374926,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327130788511688,0,0,0,0,0,0,0,0,1.258915569475,2.48830904013189,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.588886311006154,0.11796972334774,0.733714394086716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.992422356778588,0,0,0,0,0,0,1.86274977341542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207216164163037,0.6828739083758,2.76503864725637,0,0,0,0,0,0,0,0,0,0,0,0,0,2.4285549652957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.07132363163395,1.05868461514708,0.240724100067505,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101988829741982,0,0.0918948995348449,0,0,0,0,0,5.33084954752452,0.23806443146374,0.0645889098360061,0.186224142887574,0,0,0,7.40236942849669,0.684466602170562,6.33109298337123,0.717222053926764,0,0.162806537221949,0,0,0,0,0.122241444182866,2.03448089157869,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.919421224478927,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.728590576585084,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.02478218224572,3.00020732649918,0.573609190778008,0.243947412259191,0,0.116193942869518,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245976877086227,0,0.329250856225877,0,0.201057944823262,0.833296006426766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425325291727159,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.511707249066704,0,0,0,0,0,0,0,0,0,0.184161977871793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0.574265537996172,0,0,0,0,0,0,0,0,0,0,1.4875642382488,0.192190067365106,0.382838137483752,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.288666338176536,0,0,0.659006605437454,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.556812347790485,0,0,0,0,0,0,0,0,0,7.1623345421307,0.890894042497916,1.22864280839693,0,0,0,0.16480387422676,0,0,0,0,0,0,0,0.0898683511473268,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.1538995422883,2.84715956464049,0,0,0,0.325942115766024,0.638002319463839,0.0915975934018623,0,0,0,0,0,0,0,0.189753732724185,0.317873157960757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.40793459937668,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.1964690054889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2249738915515,0.77380195455795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.738832686744051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214441591374926,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327130788511688,0,0,0,0,0,0,0,0,1.258915569475,2.48830904013189,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.588886311006154,0.11796972334774,0.733714394086716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.992422356778588,0,0,0,0,0,0,1.86274977341542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207216164163037,0.6828739083758,2.76503864725637,0,0,0,0,0,0,0,0,0,0,0,0,0,2.4285549652957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.07132363163395,1.05868461514708,0.240724100067505,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101988829741982,0,0.0918948995348449,0,0,0,0,0,5.33084954752452,0.23806443146374,0.0645889098360061,0.186224142887574,0,0,0,7.40236942849669,0.684466602170562,6.33109298337123,0.717222053926764,0,0.162806537221949,0,0,0,0,0.122241444182866,2.03448089157869,0,0,0 | ||
|short_description=p1@TMPRSS11F | |short_description=p1@TMPRSS11F | ||
}} | }} |
Latest revision as of 07:25, 18 September 2015
Short description: | p1@TMPRSS11F |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TMPRSS11F_5end |
Coexpression cluster: | C820_cervical_tongue_esophagus_throat_tonsil_oral_uterus |
Association with transcript: | 0bp_to_NM_207407, uc003hdt.1_5end |
EntrezGene: | TMPRSS11F |
HGNC: | 29994 |
UniProt: | Q6ZWK6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
gingival epithelial cell | 1.73e-14 | 3 |
amnion mesenchymal stem cell | 6.19e-09 | 5 |
receptor cell | 1.68e-07 | 6 |
sensory epithelial cell | 1.68e-07 | 6 |
olfactory epithelial cell | 1.68e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
gingival epithelium | 1.73e-14 | 3 |
tonsil | 1.31e-11 | 1 |
mucosa-associated lymphoid tissue | 1.31e-11 | 1 |
lymphoid tissue | 1.31e-11 | 1 |
tonsillar ring | 1.31e-11 | 1 |
oral opening | 1.84e-11 | 22 |
surface | 2.68e-11 | 1 |
mouth | 1.16e-08 | 29 |
stomodeum | 1.16e-08 | 29 |
uterine cervix | 9.26e-08 | 6 |
neck of organ | 9.26e-08 | 6 |
embryonic uterus | 1.63e-07 | 22 |
orifice | 6.07e-07 | 36 |
extraembryonic membrane | 6.17e-07 | 14 |
membranous layer | 6.17e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
vascular disease | 2.96e-11 | 1 |
ischemia | 2.96e-11 | 1 |
extrinsic cardiomyopathy | 2.96e-11 | 1 |
myocardial ischemia | 2.96e-11 | 1 |
myocardial infarction | 2.96e-11 | 1 |