FFCP PHASE1:Hg19::chr19:42400648..42400676,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9138 | |EntrezGene=9138 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=681 | |HGNC=681 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-416bp_to_uc002osd.2_5end | |association_with_transcript=-416bp_to_uc002osd.2_5end | ||
|cluster_id=chr19:42400648..42400676,+ | |||
|coexpression_cluster_id=C1823 | |coexpression_cluster_id=C1823 | ||
|description=CAGE_peak_9_at_ARHGEF1_5end | |description=CAGE_peak_9_at_ARHGEF1_5end | ||
|id=chr19:42400648..42400676,+ | |id=chr19:42400648..42400676,+ | ||
|ontology_enrichment_celltype=CL:0000037!6.28e-14!172;CL:0000566!6.28e-14!172;CL:0002032!3.10e-13!165;CL:0000837!3.10e-13!165;CL:0000988!3.41e-12!182;CL:0000738!2.92e-11!140;CL:0000542!6.11e-11!53;CL:0000051!6.11e-11!53;CL:0000838!1.25e-10!52;CL:0002087!1.73e-10!119;CL:0002031!1.57e-08!124 | |ontology_enrichment_celltype=CL:0000037!6.28e-14!172;CL:0000566!6.28e-14!172;CL:0002032!3.10e-13!165;CL:0000837!3.10e-13!165;CL:0000988!3.41e-12!182;CL:0000738!2.92e-11!140;CL:0000542!6.11e-11!53;CL:0000051!6.11e-11!53;CL:0000838!1.25e-10!52;CL:0002087!1.73e-10!119;CL:0002031!1.57e-08!124 | ||
|ontology_enrichment_celltype_v019=CL:0000624;1.83e-09;6!CL:0000791;1.59e-08;18!CL:0000789;1.59e-08;18!CL:0002419;1.59e-08;18!CL:0000084;1.51e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000624,1.32e-09,6;CL:0000037,1.02e-08,168;CL:0000791,1.35e-08,18;CL:0000789,1.35e-08,18;CL:0002420,1.35e-08,18;CL:0002419,1.35e-08,18;CL:0000790,1.35e-08,18;CL:0002032,7.06e-08,161;CL:0000837,7.06e-08,161;CL:0000084,1.06e-07,25;CL:0000827,1.06e-07,25;CL:0000988,1.16e-07,177;CL:0000738,5.14e-07,136;CL:0000838,6.88e-07,52;CL:0002087,9.95e-07,115 | |||
|ontology_enrichment_development_v019=CL:0000790;1.59e-08;18 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.16e-16!115;UBERON:0001049!1.38e-12!57;UBERON:0005068!1.38e-12!57;UBERON:0006241!1.38e-12!57;UBERON:0007135!1.38e-12!57;UBERON:0003080!6.99e-10!42;UBERON:0001017!1.10e-09!82;UBERON:0002780!1.87e-09!41;UBERON:0001890!1.87e-09!41;UBERON:0006240!1.87e-09!41;UBERON:0002616!2.44e-09!59;UBERON:0005743!3.11e-09!86;UBERON:0000073!3.66e-09!94;UBERON:0001016!3.66e-09!94;UBERON:0002346!1.81e-08!90;UBERON:0000955!2.60e-08!69;UBERON:0006238!2.60e-08!69;UBERON:0003075!6.26e-08!86;UBERON:0007284!6.26e-08!86;UBERON:0000178!1.78e-07!15;UBERON:0000179!1.78e-07!15;UBERON:0000463!1.78e-07!15;UBERON:0002020!3.06e-07!34;UBERON:0003528!3.06e-07!34;UBERON:0002791!6.51e-07!33;UBERON:0001893!7.35e-07!34 | |ontology_enrichment_uberon=UBERON:0007023!2.16e-16!115;UBERON:0001049!1.38e-12!57;UBERON:0005068!1.38e-12!57;UBERON:0006241!1.38e-12!57;UBERON:0007135!1.38e-12!57;UBERON:0003080!6.99e-10!42;UBERON:0001017!1.10e-09!82;UBERON:0002780!1.87e-09!41;UBERON:0001890!1.87e-09!41;UBERON:0006240!1.87e-09!41;UBERON:0002616!2.44e-09!59;UBERON:0005743!3.11e-09!86;UBERON:0000073!3.66e-09!94;UBERON:0001016!3.66e-09!94;UBERON:0002346!1.81e-08!90;UBERON:0000955!2.60e-08!69;UBERON:0006238!2.60e-08!69;UBERON:0003075!6.26e-08!86;UBERON:0007284!6.26e-08!86;UBERON:0000178!1.78e-07!15;UBERON:0000179!1.78e-07!15;UBERON:0000463!1.78e-07!15;UBERON:0002020!3.06e-07!34;UBERON:0003528!3.06e-07!34;UBERON:0002791!6.51e-07!33;UBERON:0001893!7.35e-07!34 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.68e-11;15!UBERON:0000179;1.68e-11;15!UBERON:0000463;1.68e-11;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.01e-11,114;UBERON:0000178,1.44e-11,15;UBERON:0000179,1.44e-11,15;UBERON:0000463,1.44e-11,15;UBERON:0001049,6.94e-09,56;UBERON:0005068,6.94e-09,56;UBERON:0006241,6.94e-09,56;UBERON:0007135,6.94e-09,56;UBERON:0000073,1.10e-07,53;UBERON:0002616,1.10e-07,53;UBERON:0002346,2.89e-07,86;UBERON:0003075,2.99e-07,82;UBERON:0007284,2.99e-07,82 | |||
|phase1_expression=0.181678379270557,0.428201047781966,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0.123766352960047,0,0,0,0,0,0.123121058076788,0,0,0.572471974262113,0.273748850145768,0.251085279189606,0.840547463227464,0.821005894499457,0.314843125254717,0.393364276848904,0.383829398097213,0.928896739896456,0,0,0,0.774672005803016,0.853015394924529,0.293600439334847,0,1.80490002723128,1.30206522429511,0.447830948479849,0,0.257575567634187,1.59938062657521,1.13362783106643,0.485168122375632,0.464858073811369,0.411167888021826,0.309706370895104,0,0,0,0,0,0,1.12945403725563,1.36453075028923,0.224723484445085,0.612167784741805,0.320929027076094,1.27867425159808,0,1.39624560335142,0.852449501065388,0.290209238628584,0.56738522469114,0,0.75374599577023,2.08593167368081,0,2.42159801053347,0,0.316462387440884,0.422510572623884,0.850417199860174,0.209658645508376,1.01095768031846,0,0.64290234678832,1.42506371870624,1.9891667719909,0.547992461293902,0,0.546138611262131,0.889509253863555,0.426730222566507,0,0,0.661044872784862,0.954053754535364,2.84606484554724,2.34894875748376,2.29363936875137,0,0,0.790152254325231,4.32761494250433,5.89516144123747,2.67281948699362,2.34061093546949,1.30368906653436,2.36723902867367,3.89653456815823,2.89667187901451,2.3568472597987,1.10766947291811,4.06205795647523,4.48319619039863,6.50296737799391,5.42645085192131,4.42160028457357,2.02862160014537,3.26230438956533,3.74557159325598,4.18142095219907,3.96582699441482,1.53288197440768,1.71813722741315,5.56643322442906,0,0,0.950452044448374,0.752875595388864,0.639933055772092,2.49861453104692,1.4206635122641,0,2.01606743224732,2.94184215361858,2.17236605824198,0,0,0.12786256184353,0.361439152384566,0,0.289693037921647,0,0,0,0,0.087834785693126,0.458426764241994,0,0,0.324547393654683,0.522389211897802,0.930705723632056,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0892997282840798,0,0,0,0,0,0,0,0,0,0,1.45650098894541,0.860509862246441,0.354668382198357,0,0,0,0.311211035399766,0,0.326923806226917,0,0.576175924479999,0,0,0,0.298897361103602,0.117434498643765,0.161872944368132,0,0,0.245668634623536,0.206651562351531,0,0.247266929278557,0,0,0,0,0,0,0,0,0,1.4351170855109,0.213557388818567,0,0.600182192168805,0.412210116953756,1.54584324027377,0,1.0126579934476,0.194874010322397,0.757301322732344,0.276149695926898,0.646584227275248,1.06502877754984,0.302256294682921,0,0,0.272746120590835,0,0,0.265059536642971,0,0.207322110030741,0,0.36497735907583,0,0,0,0,0,0.236613600079688,0.337169380156203,0.241011029883482,0.110293972732394,0.217879444092406,0,0.134831308160164,0,0,0.738155454624648,0,0,0,2.53510069643662,0,1.18157981336281,0.882926198829301,0.122988438543114,0.171567810298526,0.329250856225877,0,0.201057944823262,0.0925884451585296,0,1.03993478527958,0,0.115930404975077,0,0,0,0,0,0,0.492434012174795,0.234004265139238,0.445893486866185,0,0.671928512795438,0.141775097242386,0.179117045405697,0,0,2.95597942737566,0.792435906119034,1.03664057770386,0,0.25248486685276,0.698476837213859,0,0,0,0.719792448923265,0.300343057843917,0.285826432630578,0,0,0.07333828582095,0.258543431515556,0,0,0,0,0,0,0,0.142977993658148,0,0,0.65147236858747,0,0,0.301439377059586,0,0.499864955910285,0,0.502257091432126,0,0,0,0,0.144781306667579,0.410952645100767,0.358121926479791,0.560425719967636,3.74358444383662,1.94064817373566,4.10697716095195,0.76228387266739,1.30139853857622,0.773288812777695,0,0.637938751653163,3.74503511973591,2.99161459204025,1.65766205374414,0.12269149171914,0,0,1.66376689224646,0.892144943985809,0.473107245101804,0.234282829985426,0,0,0,0,0,0,0,0,2.27444828735176,1.2942852049117,1.921096040462,0,0,0,0,0.153461973288062,0,0,0,0.321707842287215,0,0.154209693802656,0.355123450626254,0.0821271560138091,0,0,0.241718899183244,0,0.276242966807689,0,0.364182336013434,0,0,0.15403067420883,0,0,0.211103257785751,1.13733384070897,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0.328014645699706,0,0,0.183138929636687,0.330037999682352,0,0,0,0,0,0.307007349452259,0,0.429680979473094,0.145016693914229,0,0.356128142586949,0,0,2.55225424989168,0.2023155617111,0,0.62962469366128,0,0.308033580176089,0,0,0,0,0,0,0,0,0,0,0,0.179872457583315,0,0,0,0,0,0.48763373908959,0.243713489631284,0,0,0,0,0,0.66343897524122,0,0,0,0,0,0,0.143411352204052,0,0,0.354761064070598,0,0.658589785919804,0.379473173765715,0,0,0,0,0.0941438007767792,0,0,0,0,5.07447609232169,3.82318603571188,2.27858874869665,3.33524485640905,2.87953591160336,5.18778648954174,3.24018862342869,3.17250070517708,0.106824071127473,0.962479855263359,0,0.929015875628594,0.577076851905779,1.77854608371035,0.956557636372934,1.39705560002972,0.383010740264733,4.65681881992542,1.29848776109822,1.68478306868075,1.36940807419915,0.47003968731907,10.0253790836027,0.50787533340481,0.321176150207399,0,2.12923118845163,0,0,0,0,0.390776190804081,1.11362469558097,1.23087398947712,0.540911356951966,0.33307196799782,0,0,0.293016358543788,0.36408156524854,0.111443384277478,0,0,0.296964680832639,0,0.994147647766298,0.703347082052564,0.111308705022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|short_description=p9@ARHGEF1 | |short_description=p9@ARHGEF1 | ||
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Latest revision as of 07:12, 18 September 2015
Short description: | p9@ARHGEF1 |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_ARHGEF1_5end |
Coexpression cluster: | C1823_acute_CD4_Neutrophils_thymus_Whole_CD8_duodenum |
Association with transcript: | -416bp_to_uc002osd.2_5end |
EntrezGene: | ARHGEF1 |
HGNC: | 681 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CD4-positive, alpha-beta T cell | 1.32e-09 | 6 |
hematopoietic stem cell | 1.02e-08 | 168 |
mature alpha-beta T cell | 1.35e-08 | 18 |
alpha-beta T cell | 1.35e-08 | 18 |
immature T cell | 1.35e-08 | 18 |
mature T cell | 1.35e-08 | 18 |
immature alpha-beta T cell | 1.35e-08 | 18 |
hematopoietic oligopotent progenitor cell | 7.06e-08 | 161 |
hematopoietic multipotent progenitor cell | 7.06e-08 | 161 |
T cell | 1.06e-07 | 25 |
pro-T cell | 1.06e-07 | 25 |
hematopoietic cell | 1.16e-07 | 177 |
leukocyte | 5.14e-07 | 136 |
lymphoid lineage restricted progenitor cell | 6.88e-07 | 52 |
nongranular leukocyte | 9.95e-07 | 115 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.01e-11 | 114 |
blood | 1.44e-11 | 15 |
haemolymphatic fluid | 1.44e-11 | 15 |
organism substance | 1.44e-11 | 15 |
neural tube | 6.94e-09 | 56 |
neural rod | 6.94e-09 | 56 |
future spinal cord | 6.94e-09 | 56 |
neural keel | 6.94e-09 | 56 |
regional part of nervous system | 1.10e-07 | 53 |
regional part of brain | 1.10e-07 | 53 |
neurectoderm | 2.89e-07 | 86 |
neural plate | 2.99e-07 | 82 |
presumptive neural plate | 2.99e-07 | 82 |