FFCP PHASE1:Hg19::chr19:42400603..42400645,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr19:42400603..42400645,+ to FFCP PHASE1:Hg19::chr19:42400603..42400645,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=9138 | |EntrezGene=9138 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=681 | |HGNC=681 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-447bp_to_uc002osd.2_5end | |||
|cluster_id=chr19:42400603..42400645,+ | |||
|coexpression_cluster_id=C1823 | |||
|description=CAGE_peak_3_at_ARHGEF1_5end | |||
|id=chr19:42400603..42400645,+ | |||
|ontology_enrichment_celltype=CL:0000037!3.05e-20!172;CL:0000566!3.05e-20!172;CL:0002032!1.63e-19!165;CL:0000837!1.63e-19!165;CL:0000988!2.23e-17!182;CL:0000738!6.73e-16!140;CL:0002087!6.12e-15!119;CL:0002031!5.07e-14!124;CL:0000542!3.56e-10!53;CL:0000051!3.56e-10!53;CL:0000763!5.28e-10!112;CL:0000049!5.28e-10!112;CL:0000838!9.15e-10!52;CL:0002057!1.63e-07!42 | |||
|ontology_enrichment_celltype_v019=CL:0000791;4.95e-08;18!CL:0000789;4.95e-08;18!CL:0002419;4.95e-08;18!CL:0000084;1.05e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,1.14e-20,168;CL:0002032,1.47e-19,161;CL:0000837,1.47e-19,161;CL:0000988,1.83e-18,177;CL:0000738,6.85e-17,136;CL:0002087,2.63e-15,115;CL:0002031,3.79e-13,120;CL:0000542,1.51e-11,53;CL:0000051,1.51e-11,53;CL:0000838,5.30e-11,52;CL:0000763,4.18e-09,108;CL:0000049,4.18e-09,108;CL:0000791,3.49e-08,18;CL:0000789,3.49e-08,18;CL:0002420,3.49e-08,18;CL:0002419,3.49e-08,18;CL:0000790,3.49e-08,18;CL:0000084,8.27e-08,25;CL:0000827,8.27e-08,25;CL:0000860,9.06e-08,42;CL:0002057,9.06e-08,42 | |||
|ontology_enrichment_development_v019=CL:0000790;4.95e-08;18 | |||
|ontology_enrichment_disease=DOID:2531!3.23e-07!51;DOID:0060083!3.23e-07!51 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.36e-22!115;UBERON:0001049!2.72e-15!57;UBERON:0005068!2.72e-15!57;UBERON:0006241!2.72e-15!57;UBERON:0007135!2.72e-15!57;UBERON:0003080!1.87e-12!42;UBERON:0002780!4.26e-12!41;UBERON:0001890!4.26e-12!41;UBERON:0006240!4.26e-12!41;UBERON:0002616!3.51e-11!59;UBERON:0002390!8.83e-10!102;UBERON:0003061!8.83e-10!102;UBERON:0001017!2.10e-09!82;UBERON:0002020!4.27e-09!34;UBERON:0003528!4.27e-09!34;UBERON:0000955!4.46e-09!69;UBERON:0006238!4.46e-09!69;UBERON:0001893!5.78e-09!34;UBERON:0005743!6.58e-09!86;UBERON:0002791!7.39e-09!33;UBERON:0002346!9.87e-09!90;UBERON:0000073!2.85e-08!94;UBERON:0001016!2.85e-08!94;UBERON:0000178!3.26e-08!15;UBERON:0000179!3.26e-08!15;UBERON:0000463!3.26e-08!15;UBERON:0003075!4.88e-08!86;UBERON:0007284!4.88e-08!86;UBERON:0001869!5.96e-08!32;UBERON:0002193!9.75e-08!112;UBERON:0002619!2.91e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0000073;2.72e-10;53!UBERON:0002616;2.72e-10;53!UBERON:0002780;3.22e-10;41!UBERON:0001890;3.22e-10;41!UBERON:0000178;1.53e-09;15!UBERON:0000179;1.53e-09;15!UBERON:0000463;1.53e-09;15!UBERON:0003528;1.91e-08;34!UBERON:0002020;1.91e-08;34!UBERON:0001893;3.35e-08;34!UBERON:0002791;8.74e-08;32!UBERON:0002619;1.19e-07;22!UBERON:0001869;1.74e-07;32!UBERON:0007023;3.35e-07;114!UBERON:0001950;7.19e-07;20!UBERON:0000956;7.28e-07;25!UBERON:0000203;7.28e-07;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.35e-23,114;UBERON:0001049,6.84e-19,56;UBERON:0005068,6.84e-19,56;UBERON:0006241,6.84e-19,56;UBERON:0007135,6.84e-19,56;UBERON:0000073,6.69e-17,53;UBERON:0002616,6.69e-17,53;UBERON:0002780,7.66e-14,41;UBERON:0001890,7.66e-14,41;UBERON:0003080,7.66e-14,41;UBERON:0006240,7.66e-14,41;UBERON:0002346,1.21e-12,86;UBERON:0003075,2.08e-12,82;UBERON:0007284,2.08e-12,82;UBERON:0001017,5.97e-12,81;UBERON:0000955,4.46e-11,68;UBERON:0006238,4.46e-11,68;UBERON:0001016,1.69e-10,89;UBERON:0003528,8.19e-10,34;UBERON:0002020,8.19e-10,34;UBERON:0001893,1.20e-09,34;UBERON:0000178,2.29e-09,15;UBERON:0000179,2.29e-09,15;UBERON:0000463,2.29e-09,15;UBERON:0002390,2.52e-09,98;UBERON:0003061,2.52e-09,98;UBERON:0002791,8.08e-09,32;UBERON:0001869,2.50e-08,32;UBERON:0002193,3.04e-08,108;UBERON:0003056,3.64e-08,61;UBERON:0010371,8.27e-08,104;UBERON:0002619,9.28e-08,22;UBERON:0001950,6.88e-07,20;UBERON:0000956,7.15e-07,25;UBERON:0000203,7.15e-07,25 | |||
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| ||
|short_description=p3@ARHGEF1 | |||
}} | }} |
Latest revision as of 07:12, 18 September 2015
Short description: | p3@ARHGEF1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_ARHGEF1_5end |
Coexpression cluster: | C1823_acute_CD4_Neutrophils_thymus_Whole_CD8_duodenum |
Association with transcript: | -447bp_to_uc002osd.2_5end |
EntrezGene: | ARHGEF1 |
HGNC: | 681 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 1.14e-20 | 168 |
hematopoietic oligopotent progenitor cell | 1.47e-19 | 161 |
hematopoietic multipotent progenitor cell | 1.47e-19 | 161 |
hematopoietic cell | 1.83e-18 | 177 |
leukocyte | 6.85e-17 | 136 |
nongranular leukocyte | 2.63e-15 | 115 |
hematopoietic lineage restricted progenitor cell | 3.79e-13 | 120 |
lymphocyte | 1.51e-11 | 53 |
common lymphoid progenitor | 1.51e-11 | 53 |
lymphoid lineage restricted progenitor cell | 5.30e-11 | 52 |
myeloid cell | 4.18e-09 | 108 |
common myeloid progenitor | 4.18e-09 | 108 |
mature alpha-beta T cell | 3.49e-08 | 18 |
alpha-beta T cell | 3.49e-08 | 18 |
immature T cell | 3.49e-08 | 18 |
mature T cell | 3.49e-08 | 18 |
immature alpha-beta T cell | 3.49e-08 | 18 |
T cell | 8.27e-08 | 25 |
pro-T cell | 8.27e-08 | 25 |
classical monocyte | 9.06e-08 | 42 |
CD14-positive, CD16-negative classical monocyte | 9.06e-08 | 42 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.35e-23 | 114 |
neural tube | 6.84e-19 | 56 |
neural rod | 6.84e-19 | 56 |
future spinal cord | 6.84e-19 | 56 |
neural keel | 6.84e-19 | 56 |
regional part of nervous system | 6.69e-17 | 53 |
regional part of brain | 6.69e-17 | 53 |
regional part of forebrain | 7.66e-14 | 41 |
forebrain | 7.66e-14 | 41 |
anterior neural tube | 7.66e-14 | 41 |
future forebrain | 7.66e-14 | 41 |
neurectoderm | 1.21e-12 | 86 |
neural plate | 2.08e-12 | 82 |
presumptive neural plate | 2.08e-12 | 82 |
central nervous system | 5.97e-12 | 81 |
brain | 4.46e-11 | 68 |
future brain | 4.46e-11 | 68 |
nervous system | 1.69e-10 | 89 |
brain grey matter | 8.19e-10 | 34 |
gray matter | 8.19e-10 | 34 |
telencephalon | 1.20e-09 | 34 |
blood | 2.29e-09 | 15 |
haemolymphatic fluid | 2.29e-09 | 15 |
organism substance | 2.29e-09 | 15 |
hematopoietic system | 2.52e-09 | 98 |
blood island | 2.52e-09 | 98 |
regional part of telencephalon | 8.08e-09 | 32 |
cerebral hemisphere | 2.50e-08 | 32 |
hemolymphoid system | 3.04e-08 | 108 |
pre-chordal neural plate | 3.64e-08 | 61 |
ecto-epithelium | 8.27e-08 | 104 |
regional part of cerebral cortex | 9.28e-08 | 22 |
neocortex | 6.88e-07 | 20 |
cerebral cortex | 7.15e-07 | 25 |
pallium | 7.15e-07 | 25 |