FFCP PHASE1:Hg19::chr19:42388327..42388347,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9138 | |EntrezGene=9138 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=681 | |HGNC=681 | ||
|TSSclassifier=strong | |||
|UniProt=Q92888 | |UniProt=Q92888 | ||
|association_with_transcript=-98bp_to_ENST00000337665,NM_199002,uc002osa.2,uc002osb.2_5end | |association_with_transcript=-98bp_to_ENST00000337665,NM_199002,uc002osa.2,uc002osb.2_5end | ||
|cluster_id=chr19:42388327..42388347,+ | |||
|coexpression_cluster_id=C18 | |coexpression_cluster_id=C18 | ||
|description=CAGE_peak_8_at_ARHGEF1_5end | |description=CAGE_peak_8_at_ARHGEF1_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002087!1.64e-19!119;CL:0000838!4.75e-19!52;CL:0000542!5.31e-19!53;CL:0000051!5.31e-19!53;CL:0000738!1.58e-18!140;CL:0000084!9.28e-16!25;CL:0000827!9.28e-16!25;CL:0000037!1.38e-15!172;CL:0000566!1.38e-15!172;CL:0002031!1.91e-14!124;CL:0000988!2.12e-14!182;CL:0002032!6.39e-14!165;CL:0000837!6.39e-14!165;CL:0000791!1.23e-13!18;CL:0000789!1.23e-13!18;CL:0002420!1.23e-13!18;CL:0002419!1.23e-13!18;CL:0000790!1.23e-13!18;CL:0000625!4.45e-09!11 | |ontology_enrichment_celltype=CL:0002087!1.64e-19!119;CL:0000838!4.75e-19!52;CL:0000542!5.31e-19!53;CL:0000051!5.31e-19!53;CL:0000738!1.58e-18!140;CL:0000084!9.28e-16!25;CL:0000827!9.28e-16!25;CL:0000037!1.38e-15!172;CL:0000566!1.38e-15!172;CL:0002031!1.91e-14!124;CL:0000988!2.12e-14!182;CL:0002032!6.39e-14!165;CL:0000837!6.39e-14!165;CL:0000791!1.23e-13!18;CL:0000789!1.23e-13!18;CL:0002420!1.23e-13!18;CL:0002419!1.23e-13!18;CL:0000790!1.23e-13!18;CL:0000625!4.45e-09!11 | ||
|ontology_enrichment_celltype_v019=CL:0000791;2.76e-36;18!CL:0000789;2.76e-36;18!CL:0002419;2.76e-36;18!CL:0000084;1.47e-27;25!CL:0000625;1.19e-24;11!CL:0000624;1.07e-15;6!CL:0000542;2.19e-13;53!CL:0002087;6.99e-09;104!CL:0000898;1.11e-08;3!CL:0000623;2.39e-08;3!CL:0000226;3.22e-08;3!CL:0000842;3.22e-08;3!CL:0000767;1.88e-07;3!CL:0000094;6.99e-07;8 | |ontology_enrichment_celltype_v019=CL:0000791;2.76e-36;18!CL:0000789;2.76e-36;18!CL:0002419;2.76e-36;18!CL:0000084;1.47e-27;25!CL:0000625;1.19e-24;11!CL:0000624;1.07e-15;6!CL:0000542;2.19e-13;53!CL:0002087;6.99e-09;104!CL:0000898;1.11e-08;3!CL:0000623;2.39e-08;3!CL:0000226;3.22e-08;3!CL:0000842;3.22e-08;3!CL:0000767;1.88e-07;3!CL:0000094;6.99e-07;8 | ||
|ontology_enrichment_celltype_v019_2=CL:0000791,2.37e-36,18;CL:0000789,2.37e-36,18;CL:0002420,2.37e-36,18;CL:0002419,2.37e-36,18;CL:0000790,2.37e-36,18;CL:0000084,1.69e-27,25;CL:0000827,1.69e-27,25;CL:0000625,9.62e-25,11;CL:0000838,5.29e-24,52;CL:0000542,2.10e-23,53;CL:0000051,2.10e-23,53;CL:0000738,4.82e-23,136;CL:0002087,4.39e-22,115;CL:0002031,8.29e-17,120;CL:0000037,2.52e-16,168;CL:0000624,1.13e-15,6;CL:0000988,6.88e-15,177;CL:0002032,2.17e-14,161;CL:0000837,2.17e-14,161;CL:0000898,1.17e-08,3;CL:0000623,2.26e-08,3;CL:0000825,2.26e-08,3;CL:0000226,3.47e-08,3;CL:0000842,3.47e-08,3;CL:0000767,1.41e-07,3;CL:0000094,5.45e-07,8 | |||
|ontology_enrichment_development_v019=CL:0000790;2.76e-36;18!CL:0000051;2.19e-13;53 | |ontology_enrichment_development_v019=CL:0000790;2.76e-36;18!CL:0000051;2.19e-13;53 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;6.53e-17;15!UBERON:0000179;6.53e-17;15!UBERON:0000463;6.53e-17;15!UBERON:0002390;3.10e-10;32!UBERON:0002193;2.62e-07;42 | |ontology_enrichment_uberon_v019=UBERON:0000178;6.53e-17;15!UBERON:0000179;6.53e-17;15!UBERON:0000463;6.53e-17;15!UBERON:0002390;3.10e-10;32!UBERON:0002193;2.62e-07;42 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,6.31e-17,15;UBERON:0000179,6.31e-17,15;UBERON:0000463,6.31e-17,15;UBERON:0002193,3.92e-09,108;UBERON:0002390,5.36e-09,98;UBERON:0003061,5.36e-09,98 | |||
|phase1_expression=0,0,0,0,0,0.872338524100369,0,0,0.261185628199839,0.491467873003018,0,0,0,0,0,0,0,0,0,0,0.204000691244253,0,0,0,0.125542639594803,0.687720651731561,0.164201178899891,0.550975469195755,4.32700704533794,5.37361157336098,1.85779347979291,0,0.6024118375565,0,0.542270404062111,0.426507697462265,0.293600439334847,2.76997704265939,3.40925560699241,2.38711957787437,0,0.647787332037959,0.515151135268373,0.436194716338694,1.13362783106643,0.485168122375632,0.232429036905685,0,0.619412741790207,0,0,0.236482229888585,0.344745680736619,1.93645405075148,0,0.376484679085209,0.545812300115692,0.449446968890169,0.612167784741805,0.320929027076094,1.27867425159808,0,0.398927315243264,0,0,1.70215567407342,1.24564449799115,0.251248665256743,0.521482918420201,0.217188844705117,0,1.84138817993782,0,0.422510572623884,1.06302149982522,0.419317291016752,0,0,0.16072558669708,1.42506371870624,0.39783335439818,0.730656615058536,1.75996244461323,0,0,0.426730222566507,0.800791974072025,0.574752439954483,0.661044872784862,0,1.1384259382189,1.76171156811282,1.91136614062614,0,2.24203425192614,0.526768169550154,8.45852011489482,14.1483874589699,11.308082444973,8.02495177875255,11.0813570655421,6.62826928028627,7.79306913631645,5.68193330114385,13.2572658363677,9.30442357251209,13.8109970520158,3.5865569523189,3.77172107923647,7.5641436117691,7.18510046243206,10.4329110864619,13.0492175582613,11.5042556078577,18.8163942848958,7.59172596073693,8.04763036564035,6.18529401868734,9.36172860472161,6.05274287215784,4.55758417699493,4.75226022224187,5.27012916772205,7.29523683580185,3.74792179657038,3.78843603270427,3.28451198768419,7.86266298576456,7.75576567772171,11.8756011183895,0,0.670700859703636,0,0,0,0,0.795285947051099,1.45990461090791,0,0,0.087834785693126,0.0654895377488563,0,0,0,0.174129737299267,0,0,0,0.371457501329565,0.39752481473341,0,0.347140501607594,0.56530794192401,0.419499436209906,0.275118041940067,0.626984899610432,0,0,0,0,0,0.24406205754817,0.367663080345869,0,0.0892997282840798,0,0,0,0,0.183201743930407,2.63560834872127,3.87780264148325,0.436094052142534,0.496971951695318,0.379891534993739,0.926864265692532,0.286836620748814,0.709336764396714,0,3.20246987189115,0.74000264525148,0,0.134710672069688,0,0,0,0,0.312160076830321,0.570471821544449,0,0,0,0,0.204154171254893,0.122834317311768,0,0,0,0,0.718618141816238,0,0,0.277064115484183,0.438977620880838,0.612975591598039,0.150238058906597,0.226864366320042,0.179389635688862,0.213557388818567,0,0.300091096084402,0.103052529238439,0.515281080091258,0.18611685633159,0.337552664482532,0,0.252433774244115,0.184099797284599,0,0,0.201504196455281,0,0.386521706326594,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118306800039844,0,0,0,0,0.237270619111097,0,0,0,0.738155454624648,0,0,0,0,0,0,0.441463099414651,0,0.171567810298526,0.768251997860379,0,0.100528972411631,0,0,0,0,0,0.234817388471643,0,0,0,0,0,0,0.234004265139238,1.0404181360211,0,0,0.425325291727159,0,0.290633938513962,0,0,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0.112131084345361,0,0.22001485746285,0.129271715757778,0,0.845302752556,0,2.08014873822732,0.257207374262142,0,0,0.142977993658148,0,0.823240336780769,0,0,0,0,0,0.099972991182057,0,0,0,0.479249710983165,0,0,0.579125226670317,0.410952645100767,0,0.336255431980582,6.89607660706745,8.62510299438069,9.11235557586213,0,0,0,0,0.637938751653163,0,0,0.414415513436035,0,0,0,0.207970861530807,0.178428988797162,0,0.35142424497814,0.601892199455438,0,0,0,0,0,0,0,7.23688091430106,4.31428401637234,10.6727557803444,0.606255142892519,0,0,0.248107807818777,0.306923946576125,0,0.256278298511402,0,0,1.48418066444991,0.154209693802656,0.177561725313127,0.0821271560138091,0,0.464841513839837,0.120859449591622,0.40101294060657,0,0.114814448164607,0.182091168006717,0,0,0,0,1.46139224653261,0,1.13733384070897,0.340187410553031,0,0,0,0,0,0,0.447749509444357,0,0,0,0,0,0.103041011647722,0.183138929636687,0,0,0,0,0,0.154048617114644,0.15350367472613,0,0.107420244868274,0,0.0852266274161009,0.0890320356467374,0.165284915360978,0.192190067365106,0.382838137483752,0,0.464845549297286,1.5740617341532,0,0,0,0,0.18532421910392,0,0,0,0.190630193923825,0.255897791311334,0,0.318203247925937,0.78494864019923,0.179872457583315,0,0.471249609382746,0.404364963146632,0,0,0.48763373908959,0.487426979262569,0,0.136499911407986,0.141405431953713,0,0,0,0.876901770507525,0,0,0.811641507850816,0.6196469961995,0,0,0,0.7133421029625,0,0,0,0,0.349934720244983,0.0962221127255121,0,0,0.282431402330337,0,0,0,0,4.56702848308952,1.52927441428475,3.98753031021914,3.09701308095126,4.11362273086194,7.13320642311989,3.7802200606668,6.34500141035416,0,0,0,0.185803175125719,0,0.711418433484141,0.478278818186467,0.59873811429845,0.383010740264733,0.846694330895531,0.324621940274555,0,0,0,0,0.677167111206413,0.1605880751037,0.201799707191048,0.425846237690326,0,0,0,0.333698283423817,0.390776190804081,0.278406173895242,0,0.540911356951966,0,0,0.18714054040822,0,0.242721043499027,0.222886768554957,0,0,0,0.614321404198464,0,0.14066941641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| ||
|short_description=p8@ARHGEF1 | |short_description=p8@ARHGEF1 | ||
}} | }} |
Latest revision as of 07:01, 18 September 2015
Short description: | p8@ARHGEF1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_ARHGEF1_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | -98bp_to_ENST00000337665, NM_199002, uc002osa.2, uc002osb.2_5end |
EntrezGene: | ARHGEF1 |
HGNC: | 681 |
UniProt: | Q92888 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 2.37e-36 | 18 |
alpha-beta T cell | 2.37e-36 | 18 |
immature T cell | 2.37e-36 | 18 |
mature T cell | 2.37e-36 | 18 |
immature alpha-beta T cell | 2.37e-36 | 18 |
T cell | 1.69e-27 | 25 |
pro-T cell | 1.69e-27 | 25 |
CD8-positive, alpha-beta T cell | 9.62e-25 | 11 |
lymphoid lineage restricted progenitor cell | 5.29e-24 | 52 |
lymphocyte | 2.10e-23 | 53 |
common lymphoid progenitor | 2.10e-23 | 53 |
leukocyte | 4.82e-23 | 136 |
nongranular leukocyte | 4.39e-22 | 115 |
hematopoietic lineage restricted progenitor cell | 8.29e-17 | 120 |
hematopoietic stem cell | 2.52e-16 | 168 |
CD4-positive, alpha-beta T cell | 1.13e-15 | 6 |
hematopoietic cell | 6.88e-15 | 177 |
hematopoietic oligopotent progenitor cell | 2.17e-14 | 161 |
hematopoietic multipotent progenitor cell | 2.17e-14 | 161 |
naive T cell | 1.17e-08 | 3 |
natural killer cell | 2.26e-08 | 3 |
pro-NK cell | 2.26e-08 | 3 |
single nucleate cell | 3.47e-08 | 3 |
mononuclear cell | 3.47e-08 | 3 |
basophil | 1.41e-07 | 3 |
granulocyte | 5.45e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
blood | 6.31e-17 | 15 |
haemolymphatic fluid | 6.31e-17 | 15 |
organism substance | 6.31e-17 | 15 |
hemolymphoid system | 3.92e-09 | 108 |
hematopoietic system | 5.36e-09 | 98 |
blood island | 5.36e-09 | 98 |