FFCP PHASE1:Hg19::chr19:42388301..42388319,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9138 | |EntrezGene=9138 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=681 | |HGNC=681 | ||
|TSSclassifier=strong | |||
|UniProt=Q92888 | |UniProt=Q92888 | ||
|association_with_transcript=-126bp_to_ENST00000337665,NM_199002,uc002osa.2,uc002osb.2_5end | |association_with_transcript=-126bp_to_ENST00000337665,NM_199002,uc002osa.2,uc002osb.2_5end | ||
|cluster_id=chr19:42388301..42388319,+ | |||
|coexpression_cluster_id=C18 | |coexpression_cluster_id=C18 | ||
|description=CAGE_peak_6_at_ARHGEF1_5end | |description=CAGE_peak_6_at_ARHGEF1_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002087!4.75e-23!119;CL:0000738!3.81e-21!140;CL:0000838!2.62e-20!52;CL:0002031!4.73e-20!124;CL:0000542!1.49e-19!53;CL:0000051!1.49e-19!53;CL:0000037!1.43e-16!172;CL:0000566!1.43e-16!172;CL:0002032!3.01e-16!165;CL:0000837!3.01e-16!165;CL:0000791!1.87e-15!18;CL:0000789!1.87e-15!18;CL:0002420!1.87e-15!18;CL:0002419!1.87e-15!18;CL:0000790!1.87e-15!18;CL:0000988!2.76e-15!182;CL:0000084!2.66e-13!25;CL:0000827!2.66e-13!25;CL:0000625!2.56e-10!11;CL:0000624!9.97e-07!6 | |ontology_enrichment_celltype=CL:0002087!4.75e-23!119;CL:0000738!3.81e-21!140;CL:0000838!2.62e-20!52;CL:0002031!4.73e-20!124;CL:0000542!1.49e-19!53;CL:0000051!1.49e-19!53;CL:0000037!1.43e-16!172;CL:0000566!1.43e-16!172;CL:0002032!3.01e-16!165;CL:0000837!3.01e-16!165;CL:0000791!1.87e-15!18;CL:0000789!1.87e-15!18;CL:0002420!1.87e-15!18;CL:0002419!1.87e-15!18;CL:0000790!1.87e-15!18;CL:0000988!2.76e-15!182;CL:0000084!2.66e-13!25;CL:0000827!2.66e-13!25;CL:0000625!2.56e-10!11;CL:0000624!9.97e-07!6 | ||
|ontology_enrichment_celltype_v019=CL:0000791;1.31e-40;18!CL:0000789;1.31e-40;18!CL:0002419;1.31e-40;18!CL:0000084;7.87e-28;25!CL:0000625;8.19e-28;11!CL:0000624;4.44e-17;6!CL:0000542;1.72e-14;53!CL:0000898;3.07e-09;3!CL:0000623;4.64e-09;3!CL:0000226;6.80e-09;3!CL:0000842;6.80e-09;3!CL:0002087;1.33e-08;104!CL:0000767;5.96e-08;3!CL:0000875;2.51e-07;3!CL:0002396;2.51e-07;3!CL:0000815;7.40e-07;2!CL:0000792;7.40e-07;2!CL:0002677;7.40e-07;2 | |ontology_enrichment_celltype_v019=CL:0000791;1.31e-40;18!CL:0000789;1.31e-40;18!CL:0002419;1.31e-40;18!CL:0000084;7.87e-28;25!CL:0000625;8.19e-28;11!CL:0000624;4.44e-17;6!CL:0000542;1.72e-14;53!CL:0000898;3.07e-09;3!CL:0000623;4.64e-09;3!CL:0000226;6.80e-09;3!CL:0000842;6.80e-09;3!CL:0002087;1.33e-08;104!CL:0000767;5.96e-08;3!CL:0000875;2.51e-07;3!CL:0002396;2.51e-07;3!CL:0000815;7.40e-07;2!CL:0000792;7.40e-07;2!CL:0002677;7.40e-07;2 | ||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.30e-40,18;CL:0000789,1.30e-40,18;CL:0002420,1.30e-40,18;CL:0002419,1.30e-40,18;CL:0000790,1.30e-40,18;CL:0000084,7.84e-28,25;CL:0000827,7.84e-28,25;CL:0000625,7.92e-28,11;CL:0000838,3.77e-25,52;CL:0000542,1.54e-24,53;CL:0000051,1.54e-24,53;CL:0002087,1.83e-21,115;CL:0000738,2.05e-21,136;CL:0000624,4.57e-17,6;CL:0000037,2.89e-16,168;CL:0002031,3.70e-16,120;CL:0000988,6.99e-15,177;CL:0002032,3.63e-14,161;CL:0000837,3.63e-14,161;CL:0000898,3.07e-09,3;CL:0000623,4.71e-09,3;CL:0000825,4.71e-09,3;CL:0000226,6.46e-09,3;CL:0000842,6.46e-09,3;CL:0002393,9.79e-09,9;CL:0002397,9.79e-09,9;CL:0000767,5.21e-08,3;CL:0000875,2.54e-07,3;CL:0002396,2.54e-07,3;CL:0000815,7.40e-07,2;CL:0000792,7.40e-07,2;CL:0002677,7.40e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000790;1.31e-40;18!CL:0000051;1.72e-14;53 | |ontology_enrichment_development_v019=CL:0000790;1.31e-40;18!CL:0000051;1.72e-14;53 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!7.58e-11!102;UBERON:0003061!7.58e-11!102;UBERON:0000178!1.10e-09!15;UBERON:0000179!1.10e-09!15;UBERON:0000463!1.10e-09!15;UBERON:0002193!8.95e-09!112 | |ontology_enrichment_uberon=UBERON:0002390!7.58e-11!102;UBERON:0003061!7.58e-11!102;UBERON:0000178!1.10e-09!15;UBERON:0000179!1.10e-09!15;UBERON:0000463!1.10e-09!15;UBERON:0002193!8.95e-09!112 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;9.73e-22;15!UBERON:0000179;9.73e-22;15!UBERON:0000463;9.73e-22;15!UBERON:0002390;7.70e-13;32!UBERON:0002193;1.10e-07;42 | |ontology_enrichment_uberon_v019=UBERON:0000178;9.73e-22;15!UBERON:0000179;9.73e-22;15!UBERON:0000463;9.73e-22;15!UBERON:0002390;7.70e-13;32!UBERON:0002193;1.10e-07;42 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,7.81e-22,15;UBERON:0000179,7.81e-22,15;UBERON:0000463,7.81e-22,15;UBERON:0002390,1.27e-09,98;UBERON:0003061,1.27e-09,98;UBERON:0002193,5.12e-09,108 | |||
|phase1_expression=0.181678379270557,0,0.140954404095971,0,0,0,0,0,0,0.245733936501509,0.697801167972428,0.218441372130172,0.263766978228454,0.123766352960047,0,0,0.602694528023977,0,0,0,0,0,0,0,0,0.61130724598361,0.328402357799783,0.708397031823113,3.14691421479123,6.90892916574983,1.70297735647684,0,0,0.369754010166788,0.154934401160603,0.568676929949686,0,2.21598163412751,1.80490002723128,3.25516306073778,0.223915474239924,0.32389366601898,0,0.145398238779565,0.377875943688809,0,0,0.411167888021826,0,0,0,0.709446689665756,0,1.29096936716765,1.35426486594342,0.564727018627814,0.818718450173537,0.449446968890169,0.306083892370903,1.28371610830437,0,0,0.598390972864896,0,0.580418477257168,0.56738522469114,0,0,0.521482918420201,0.868755378820466,0.605399502633369,0.368277635987565,0,0.845021145247767,0.850417199860174,0.209658645508376,0,0,0,1.42506371870624,1.19350006319454,1.64397738388171,0,1.09227722252426,0,0.426730222566507,0.800791974072025,1.72425731986345,0,0.954053754535364,2.27685187643779,1.17447437874188,1.52909291250092,0,3.36305137788922,0,15.1466522987651,13.7553766962208,13.3640974349681,9.86400322805001,12.71096839871,8.5220605032252,9.74133642039557,5.45911238737351,14.435689466267,9.30442357251209,12.9985854607207,4.48319619039863,4.68213651215562,8.22189523018381,7.46145048021791,11.012517257932,19.8703994637161,10.4340922954988,10.4535523804977,9.40467544389799,8.43085085924227,7.55980380061786,7.08455137654608,6.68987370080603,6.51083453856419,9.50452044448374,3.91495309602209,3.07167866770604,13.742379920758,7.81364931745256,7.39015197228942,12.0964045934839,13.9068901807424,12.8893719455691,0,0,0.12786256184353,0,0,0,0.795285947051099,0,0,0.221729397462564,0.175669571386252,0.458426764241994,0,0,0,0,0.132957960518865,0.238490624305342,0,0,0.39752481473341,0,0,0,0,0.275118041940067,0.417989933073621,0,0,0,0,0,0,0,0,0.0892997282840798,0.22452937262617,0.112611480483322,0,0,0.183201743930407,1.31780417436063,0,0,0,0.12663051166458,0.264818361626438,0.286836620748814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.277064115484183,0,0,0,0.226864366320042,0,0,0,0.300091096084402,0,0,0,0.337552664482532,0,0,0,0,0,0,0.169560592310488,0.773043412653187,0.272746120590835,0,0,0,0,0,0,0,0,0,0,0,0,0.118306800039844,0,0,0.110293972732394,0.435758888184812,0,0.134831308160164,0,0,0,0,0.4115740113314,0,0,0,0,0,0.245976877086227,0,1.31700342490351,0,0.301586917234893,0,0,0,0,0,0,0,0,0,0,0,0.246217006087397,1.17002132569619,0.445893486866185,0,0.503946384596579,0,0.179117045405697,0.290633938513962,0.383382679165211,0,0,0.621984346622316,0,0.37872730027914,0,0,0,0,0,0,0,0.112131084345361,0,0.1466765716419,0.258543431515556,0,0.845302752556,0,0,0.514414748524284,0,0.266422179016099,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289562613335158,0.205476322550383,0,0.224170287987055,9.45747648969251,11.2126338926949,9.62572772098113,0,0,0,0,0,0,0,0.414415513436035,0,0,0,0.415941723061614,0,0,0,0,0,0,0,0,0,0,0,9.9248652538986,5.39285502046542,12.3803967051995,0,0,0,0.496215615637554,0.306923946576125,0.280660094433074,0.128139149255701,0,0.321707842287215,0,0,0.177561725313127,0.0821271560138091,0,0.232420756919918,0,0.40101294060657,0.184161977871793,0,0.182091168006717,0,0.451199612907412,0.231046011313244,0,0,0.105551628892876,0,0.170093705276516,0,0,0,0,0.509752546090077,0,0,0,0,0,0.328014645699706,0,0,0,0,0,0,0,0,0,0,0.137836572484531,0,0,0.170453254832202,0,0,0,0.255225424989168,0,0,0.31481234683064,0,0,0.532306030317022,0,0.18532421910392,0.286249773483982,0,0,0.190630193923825,0,0,0.318203247925937,0.78494864019923,0,0,0,0.606547444719948,0,0.421258456238981,0,0,2.11300293513511,0,0.141405431953713,0,0,0,0,0.578775534266688,0,0.202910376962704,0,0,0,0.0982490410131212,0,0,0,0,0,0.349934720244983,0.0962221127255121,0.670302275535787,0,0.376575203107117,1.29151611801369,0,0,0,3.55213326462519,2.29391162142713,1.70894156152249,4.04994018278241,6.17043409629291,6.48473311192717,2.70015718619057,4.75875105776562,0,0,0,0,0.144269212976445,0.569134746787313,0.478278818186467,0,0,0.211673582723883,0,0.280797178113459,0,0,2.50634477090067,0.677167111206413,0.321176150207399,0,0,0,0,0,0,0,0.278406173895242,0,0,0.33307196799782,0,0,0,0.121360521749513,0,0,0.23874448473769,0,0.307160702099232,0,0.281338832821026,0,0.16480387422676,0.422250816255987,0.19924798825107,2.48655523978033,0,0,0.246169610922139,0,0,0,0,0.0986434056369336,2.3948309234694,0,0,0.278304294485554,0,0.260427761085233,0,0,0.1137934482855,0,0,0.344743373241465,0.583209226766509,0.173624994933292,0,0.120596438625408,0,0,0,0,0,0,0.384751292518985,0,0,0.179515288819544,0,0,0.0915975934018623,0,0,0.31396051279005,0,0,0,0.167821586975843,0.189753732724185,0,0,0,0.141353071433941,0,0,0.265372693510018,0.611030144933625,0.296521128680622,0,0.313265848516366,0.134802265961354,0,0,0.182454789215666,0,0,0,0,0,0.189559738885464,0,0,0,0,0,1.19472429772959,0,0,0,0.195984794828755,0.174118413160805,0.17472666824203,0,0,0.0730893170861856,0.0821154570532092,0.0969890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|short_description=p6@ARHGEF1 | |short_description=p6@ARHGEF1 | ||
}} | }} |
Latest revision as of 07:01, 18 September 2015
Short description: | p6@ARHGEF1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_ARHGEF1_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | -126bp_to_ENST00000337665, NM_199002, uc002osa.2, uc002osb.2_5end |
EntrezGene: | ARHGEF1 |
HGNC: | 681 |
UniProt: | Q92888 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
blood | 7.81e-22 | 15 |
haemolymphatic fluid | 7.81e-22 | 15 |
organism substance | 7.81e-22 | 15 |
hematopoietic system | 1.27e-09 | 98 |
blood island | 1.27e-09 | 98 |
hemolymphoid system | 5.12e-09 | 108 |