FFCP PHASE1:Hg19::chr1:16174193..16174217,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:16174193..16174217,+ to FFCP PHASE1:Hg19::chr1:16174193..16174217,+: NSchange) |
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(11 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=23013 | |EntrezGene=23013 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17575 | |HGNC=17575 | ||
|TSSclassifier=strong | |||
|UniProt=Q96T58 | |UniProt=Q96T58 | ||
|association_with_transcript=-141bp_to_ENST00000375759,NM_015001,uc001axk.1_5end | |||
|cluster_id=chr1:16174193..16174217,+ | |||
|description=CAGE_peak_2_at_SPEN_5end | |||
|id=chr1:16174193..16174217,+ | |||
|ontology_enrichment_celltype=CL:0000738!7.44e-18!140;CL:0000766!1.93e-17!76;CL:0002057!6.60e-16!42;CL:0000860!8.68e-16!45;CL:0000037!3.09e-15!172;CL:0000566!3.09e-15!172;CL:0000557!5.20e-15!71;CL:0002031!1.80e-14!124;CL:0002032!3.07e-14!165;CL:0000837!3.07e-14!165;CL:0000839!6.66e-14!70;CL:0000763!9.58e-14!112;CL:0000049!9.58e-14!112;CL:0000988!5.15e-13!182;CL:0002009!1.98e-12!65;CL:0002087!6.28e-12!119;CL:0002194!2.17e-11!63;CL:0000576!2.17e-11!63;CL:0000040!2.17e-11!63;CL:0000559!2.17e-11!63 | |||
|ontology_enrichment_celltype_v019=CL:0000860;4.62e-12;33!CL:0002057;4.62e-12;33!CL:0000576;1.68e-10;48!CL:0000766;1.54e-08;69!CL:0000473;8.15e-07;39!CL:0000234;8.15e-07;39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,9.96e-19,72;CL:0000738,3.48e-18,136;CL:0000557,3.42e-16,67;CL:0000860,4.99e-16,42;CL:0002057,4.99e-16,42;CL:0000037,3.30e-15,168;CL:0000839,5.13e-15,66;CL:0002031,7.44e-15,120;CL:0000763,3.10e-14,108;CL:0000049,3.10e-14,108;CL:0002032,3.31e-14,161;CL:0000837,3.31e-14,161;CL:0002009,1.70e-13,61;CL:0000988,2.57e-13,177;CL:0002194,2.14e-12,59;CL:0000576,2.14e-12,59;CL:0000040,2.14e-12,59;CL:0000559,2.14e-12,59;CL:0002087,3.76e-12,115;CL:0000473,4.07e-12,48;CL:0000234,4.07e-12,48 | |||
|ontology_enrichment_development_v019=CL:0002057;9.65e-12;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.68e-22!115;UBERON:0002390!1.58e-12!102;UBERON:0003061!1.58e-12!102;UBERON:0002193!7.09e-11!112;UBERON:0002371!1.80e-09!80;UBERON:0001474!2.44e-09!86;UBERON:0001049!1.71e-08!57;UBERON:0005068!1.71e-08!57;UBERON:0006241!1.71e-08!57;UBERON:0007135!1.71e-08!57;UBERON:0002616!7.25e-08!59;UBERON:0002780!7.90e-08!41;UBERON:0001890!7.90e-08!41;UBERON:0006240!7.90e-08!41;UBERON:0003080!3.15e-07!42 | |||
|ontology_enrichment_uberon_v019=UBERON:0000073;6.18e-07;53!UBERON:0002616;6.18e-07;53 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.81e-22,114;UBERON:0002390,1.62e-13,98;UBERON:0003061,1.62e-13,98;UBERON:0002193,1.75e-11,108;UBERON:0002371,1.65e-10,76;UBERON:0001474,2.67e-10,82;UBERON:0000073,3.16e-09,53;UBERON:0002616,3.16e-09,53;UBERON:0001049,3.67e-09,56;UBERON:0005068,3.67e-09,56;UBERON:0006241,3.67e-09,56;UBERON:0007135,3.67e-09,56;UBERON:0002405,7.67e-09,93;UBERON:0002780,4.48e-08,41;UBERON:0001890,4.48e-08,41;UBERON:0003080,4.48e-08,41;UBERON:0006240,4.48e-08,41;UBERON:0004765,7.97e-08,90;UBERON:0000955,6.21e-07,68;UBERON:0006238,6.21e-07,68 | |||
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| ||
|short_description=p2@SPEN | |||
}} | }} |
Latest revision as of 06:45, 18 September 2015
Short description: | p2@SPEN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SPEN_5end |
Coexpression cluster: | NA |
Association with transcript: | -141bp_to_ENST00000375759, NM_015001, uc001axk.1_5end |
EntrezGene: | SPEN |
HGNC: | 17575 |
UniProt: | Q96T58 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 9.96e-19 | 72 |
leukocyte | 3.48e-18 | 136 |
granulocyte monocyte progenitor cell | 3.42e-16 | 67 |
classical monocyte | 4.99e-16 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.99e-16 | 42 |
hematopoietic stem cell | 3.30e-15 | 168 |
myeloid lineage restricted progenitor cell | 5.13e-15 | 66 |
hematopoietic lineage restricted progenitor cell | 7.44e-15 | 120 |
myeloid cell | 3.10e-14 | 108 |
common myeloid progenitor | 3.10e-14 | 108 |
hematopoietic oligopotent progenitor cell | 3.31e-14 | 161 |
hematopoietic multipotent progenitor cell | 3.31e-14 | 161 |
macrophage dendritic cell progenitor | 1.70e-13 | 61 |
hematopoietic cell | 2.57e-13 | 177 |
monopoietic cell | 2.14e-12 | 59 |
monocyte | 2.14e-12 | 59 |
monoblast | 2.14e-12 | 59 |
promonocyte | 2.14e-12 | 59 |
nongranular leukocyte | 3.76e-12 | 115 |
defensive cell | 4.07e-12 | 48 |
phagocyte | 4.07e-12 | 48 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.81e-22 | 114 |
hematopoietic system | 1.62e-13 | 98 |
blood island | 1.62e-13 | 98 |
hemolymphoid system | 1.75e-11 | 108 |
bone marrow | 1.65e-10 | 76 |
bone element | 2.67e-10 | 82 |
regional part of nervous system | 3.16e-09 | 53 |
regional part of brain | 3.16e-09 | 53 |
neural tube | 3.67e-09 | 56 |
neural rod | 3.67e-09 | 56 |
future spinal cord | 3.67e-09 | 56 |
neural keel | 3.67e-09 | 56 |
immune system | 7.67e-09 | 93 |
regional part of forebrain | 4.48e-08 | 41 |
forebrain | 4.48e-08 | 41 |
anterior neural tube | 4.48e-08 | 41 |
future forebrain | 4.48e-08 | 41 |
skeletal element | 7.97e-08 | 90 |
brain | 6.21e-07 | 68 |
future brain | 6.21e-07 | 68 |