FFCP PHASE1:Hg19::chr5:56469843..56469923,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr5:56469843..56469923,+ to FFCP PHASE1:Hg19::chr5:56469843..56469923,+: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=65056 | |EntrezGene=65056 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29520 | |HGNC=29520 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000514387_5end | |||
|cluster_id=chr5:56469843..56469923,+ | |||
|description=CAGE_peak_1_at_GPBP1_5end | |||
|id=chr5:56469843..56469923,+ | |||
|ontology_enrichment_celltype=CL:0000738!2.07e-27!140;CL:0000037!5.31e-25!172;CL:0000566!5.31e-25!172;CL:0002032!1.34e-23!165;CL:0000837!1.34e-23!165;CL:0002031!5.52e-22!124;CL:0000988!8.18e-22!182;CL:0000766!2.19e-19!76;CL:0002057!1.41e-18!42;CL:0002087!2.13e-18!119;CL:0000763!2.78e-18!112;CL:0000049!2.78e-18!112;CL:0000860!3.56e-18!45;CL:0000557!2.84e-17!71;CL:0000839!1.84e-16!70;CL:0002009!8.57e-15!65;CL:0002194!9.10e-14!63;CL:0000576!9.10e-14!63;CL:0000040!9.10e-14!63;CL:0000559!9.10e-14!63 | |||
|ontology_enrichment_celltype_v019=CL:0000860;3.38e-17;33!CL:0002057;3.38e-17;33!CL:0000576;1.17e-12;48!CL:0000473;1.21e-11;39!CL:0000234;1.21e-11;39!CL:0000766;1.05e-09;69!CL:0002087;2.07e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,5.68e-28,136;CL:0000037,2.23e-25,168;CL:0002032,5.65e-24,161;CL:0000837,5.65e-24,161;CL:0000988,8.81e-23,177;CL:0002031,1.69e-22,120;CL:0000766,3.30e-20,72;CL:0002087,7.67e-19,115;CL:0000763,9.28e-19,108;CL:0000049,9.28e-19,108;CL:0000860,1.41e-18,42;CL:0002057,1.41e-18,42;CL:0000557,4.69e-18,67;CL:0000839,3.25e-17,66;CL:0002009,1.61e-15,61;CL:0000473,2.59e-15,48;CL:0000234,2.59e-15,48;CL:0002194,1.84e-14,59;CL:0000576,1.84e-14,59;CL:0000040,1.84e-14,59;CL:0000559,1.84e-14,59 | |||
|ontology_enrichment_development_v019=CL:0002057;7.30e-14;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!5.68e-26!115;UBERON:0002390!2.69e-18!102;UBERON:0003061!2.69e-18!102;UBERON:0002193!7.76e-15!112;UBERON:0001049!2.02e-14!57;UBERON:0005068!2.02e-14!57;UBERON:0006241!2.02e-14!57;UBERON:0007135!2.02e-14!57;UBERON:0002371!1.95e-13!80;UBERON:0003080!3.32e-13!42;UBERON:0002780!7.76e-13!41;UBERON:0001890!7.76e-13!41;UBERON:0006240!7.76e-13!41;UBERON:0001474!1.24e-12!86;UBERON:0002616!1.27e-11!59;UBERON:0001017!1.42e-11!82;UBERON:0000955!3.86e-11!69;UBERON:0006238!3.86e-11!69;UBERON:0002020!1.19e-10!34;UBERON:0003528!1.19e-10!34;UBERON:0005743!2.17e-10!86;UBERON:0001893!2.75e-10!34;UBERON:0002791!4.50e-10!33;UBERON:0001869!8.65e-10!32;UBERON:0004765!1.02e-09!101;UBERON:0001434!1.02e-09!101;UBERON:0000073!1.31e-09!94;UBERON:0001016!1.31e-09!94;UBERON:0002405!5.49e-08!115;UBERON:0002619!1.42e-07!22;UBERON:0000956!2.26e-07!25;UBERON:0000203!2.26e-07!25;UBERON:0003075!3.33e-07!86;UBERON:0007284!3.33e-07!86;UBERON:0001950!8.63e-07!20 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;1.88e-09;41!UBERON:0001890;1.88e-09;41!UBERON:0003528;2.52e-09;34!UBERON:0002020;2.52e-09;34!UBERON:0002791;3.01e-09;32!UBERON:0001869;5.13e-09;32!UBERON:0001893;8.12e-09;34!UBERON:0000073;2.77e-08;53!UBERON:0002616;2.77e-08;53!UBERON:0007023;8.24e-08;114!UBERON:0002619;1.41e-07;22!UBERON:0000956;2.13e-07;25!UBERON:0000203;2.13e-07;25!UBERON:0001950;8.30e-07;20 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.71e-25,114;UBERON:0002390,7.81e-19,98;UBERON:0003061,7.81e-19,98;UBERON:0002193,3.28e-15,108;UBERON:0001049,4.68e-14,56;UBERON:0005068,4.68e-14,56;UBERON:0006241,4.68e-14,56;UBERON:0007135,4.68e-14,56;UBERON:0002371,6.08e-14,76;UBERON:0000073,3.05e-13,53;UBERON:0002616,3.05e-13,53;UBERON:0001474,4.60e-13,82;UBERON:0002780,7.76e-13,41;UBERON:0001890,7.76e-13,41;UBERON:0003080,7.76e-13,41;UBERON:0006240,7.76e-13,41;UBERON:0002405,1.44e-11,93;UBERON:0001017,2.94e-11,81;UBERON:0004765,7.84e-11,90;UBERON:0000955,8.16e-11,68;UBERON:0006238,8.16e-11,68;UBERON:0003528,1.19e-10,34;UBERON:0002020,1.19e-10,34;UBERON:0001016,2.36e-10,89;UBERON:0001893,2.75e-10,34;UBERON:0002791,5.28e-10,32;UBERON:0001869,8.65e-10,32;UBERON:0001434,2.38e-09,100;UBERON:0002619,1.42e-07,22;UBERON:0000956,2.26e-07,25;UBERON:0000203,2.26e-07,25;UBERON:0001950,8.63e-07,20 | |||
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| ||
|short_description=p1@GPBP1 | |||
}} | }} |
Latest revision as of 05:49, 18 September 2015
Short description: | p1@GPBP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GPBP1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000514387_5end |
EntrezGene: | GPBP1 |
HGNC: | 29520 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 5.68e-28 | 136 |
hematopoietic stem cell | 2.23e-25 | 168 |
hematopoietic oligopotent progenitor cell | 5.65e-24 | 161 |
hematopoietic multipotent progenitor cell | 5.65e-24 | 161 |
hematopoietic cell | 8.81e-23 | 177 |
hematopoietic lineage restricted progenitor cell | 1.69e-22 | 120 |
myeloid leukocyte | 3.30e-20 | 72 |
nongranular leukocyte | 7.67e-19 | 115 |
myeloid cell | 9.28e-19 | 108 |
common myeloid progenitor | 9.28e-19 | 108 |
classical monocyte | 1.41e-18 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.41e-18 | 42 |
granulocyte monocyte progenitor cell | 4.69e-18 | 67 |
myeloid lineage restricted progenitor cell | 3.25e-17 | 66 |
macrophage dendritic cell progenitor | 1.61e-15 | 61 |
defensive cell | 2.59e-15 | 48 |
phagocyte | 2.59e-15 | 48 |
monopoietic cell | 1.84e-14 | 59 |
monocyte | 1.84e-14 | 59 |
monoblast | 1.84e-14 | 59 |
promonocyte | 1.84e-14 | 59 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.71e-25 | 114 |
hematopoietic system | 7.81e-19 | 98 |
blood island | 7.81e-19 | 98 |
hemolymphoid system | 3.28e-15 | 108 |
neural tube | 4.68e-14 | 56 |
neural rod | 4.68e-14 | 56 |
future spinal cord | 4.68e-14 | 56 |
neural keel | 4.68e-14 | 56 |
bone marrow | 6.08e-14 | 76 |
regional part of nervous system | 3.05e-13 | 53 |
regional part of brain | 3.05e-13 | 53 |
bone element | 4.60e-13 | 82 |
regional part of forebrain | 7.76e-13 | 41 |
forebrain | 7.76e-13 | 41 |
anterior neural tube | 7.76e-13 | 41 |
future forebrain | 7.76e-13 | 41 |
immune system | 1.44e-11 | 93 |
central nervous system | 2.94e-11 | 81 |
skeletal element | 7.84e-11 | 90 |
brain | 8.16e-11 | 68 |
future brain | 8.16e-11 | 68 |
brain grey matter | 1.19e-10 | 34 |
gray matter | 1.19e-10 | 34 |
nervous system | 2.36e-10 | 89 |
telencephalon | 2.75e-10 | 34 |
regional part of telencephalon | 5.28e-10 | 32 |
cerebral hemisphere | 8.65e-10 | 32 |
skeletal system | 2.38e-09 | 100 |
regional part of cerebral cortex | 1.42e-07 | 22 |
cerebral cortex | 2.26e-07 | 25 |
pallium | 2.26e-07 | 25 |
neocortex | 8.63e-07 | 20 |