FFCP PHASE1:Hg19::chr6:32920794..32920890,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3108 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4934 | |||
|TSSclassifier=strong | |||
|UniProt=B7Z4Y5,Q5SP00,A2AAT8 | |||
|association_with_transcript=0bp_to_ENST00000341486,ENST00000395303,ENST00000395305,ENST00000475627,ENST00000477541_5end | |||
|cluster_id=chr6:32920794..32920890,- | |||
|coexpression_cluster_id=C187 | |||
|description=CAGE_peak_1_at_HLA-DMA_5end | |||
|id=chr6:32920794..32920890,- | |||
|ontology_enrichment_celltype=CL:0000738!3.00e-47!140;CL:0002087!9.99e-44!119;CL:0000037!1.60e-41!172;CL:0000566!1.60e-41!172;CL:0002031!7.41e-40!124;CL:0000988!1.14e-38!182;CL:0002032!1.52e-38!165;CL:0000837!1.52e-38!165;CL:0002009!3.34e-28!65;CL:0002194!6.23e-27!63;CL:0000576!6.23e-27!63;CL:0000040!6.23e-27!63;CL:0000559!6.23e-27!63;CL:0000557!5.90e-26!71;CL:0000766!1.42e-25!76;CL:0002057!2.10e-24!42;CL:0000839!1.61e-23!70;CL:0000763!2.17e-22!112;CL:0000049!2.17e-22!112;CL:0000860!3.43e-21!45;CL:0000542!7.54e-15!53;CL:0000051!7.54e-15!53;CL:0000838!2.01e-14!52;CL:0000945!1.42e-13!24;CL:0000826!1.42e-13!24;CL:0000236!1.52e-09!14;CL:0000134!9.68e-09!358;CL:0000451!1.95e-08!10;CL:0002320!1.97e-08!365;CL:0000990!2.80e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0000473;1.38e-18;39!CL:0000234;1.38e-18;39!CL:0000860;2.19e-18;33!CL:0002057;2.19e-18;33!CL:0000576;1.50e-16;48!CL:0000945;8.58e-14;24!CL:0002087;2.62e-13;104!CL:0000766;2.27e-12;69!CL:0000738;1.84e-11;136!CL:0000542;1.64e-09;53!CL:0000236;2.83e-09;13!CL:0000451;1.45e-08;10!CL:0000988;4.12e-08;177!CL:0000763;1.19e-07;100!CL:0000990;2.19e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,5.39e-51,136;CL:0002087,1.28e-47,115;CL:0000037,1.73e-45,168;CL:0000988,1.16e-43,177;CL:0002031,2.17e-43,120;CL:0002032,2.16e-42,161;CL:0000837,2.16e-42,161;CL:0002009,4.13e-32,61;CL:0002194,8.80e-31,59;CL:0000576,8.80e-31,59;CL:0000040,8.80e-31,59;CL:0000559,8.80e-31,59;CL:0000557,2.16e-29,67;CL:0000766,8.14e-29,72;CL:0000473,1.15e-28,48;CL:0000234,1.15e-28,48;CL:0000839,9.94e-27,66;CL:0000763,1.68e-25,108;CL:0000049,1.68e-25,108;CL:0000860,8.69e-25,42;CL:0002057,8.69e-25,42;CL:0000542,3.16e-15,53;CL:0000051,3.16e-15,53;CL:0000838,8.59e-15,52;CL:0000945,8.96e-14,24;CL:0000826,8.96e-14,24;CL:0000134,5.44e-10,354;CL:0000236,1.12e-09,14;CL:0002320,1.20e-09,361;CL:0000451,1.50e-08,10;CL:0000990,2.24e-07,8;CL:0000219,4.11e-07,386 | |||
|ontology_enrichment_development_v019=CL:0002057;4.65e-18;42!CL:0000051;1.64e-09;53!CL:0000049;9.33e-08;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!7.93e-36!102;UBERON:0003061!7.93e-36!102;UBERON:0002193!1.74e-31!112;UBERON:0002371!1.22e-26!80;UBERON:0001474!8.83e-22!86;UBERON:0007023!1.19e-21!115;UBERON:0002405!1.37e-20!115;UBERON:0004765!1.84e-16!101;UBERON:0001434!1.84e-16!101;UBERON:0002384!4.72e-08!375;UBERON:0000178!1.32e-07!15;UBERON:0000179!1.32e-07!15;UBERON:0000463!1.32e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0002390;8.88e-09;32!UBERON:0000178;1.02e-07;15!UBERON:0000179;1.02e-07;15!UBERON:0000463;1.02e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.63e-39,98;UBERON:0003061,2.63e-39,98;UBERON:0002193,4.24e-34,108;UBERON:0002371,7.16e-30,76;UBERON:0002405,2.94e-27,93;UBERON:0001474,9.29e-25,82;UBERON:0007023,6.30e-22,114;UBERON:0004765,4.39e-21,90;UBERON:0001434,1.80e-17,100;UBERON:0002384,3.61e-09,371;UBERON:0000178,1.04e-07,15;UBERON:0000179,1.04e-07,15;UBERON:0000463,1.04e-07,15;UBERON:0003081,3.62e-07,203 | |||
|phase1_expression=7.81217030863394,67.4416650256597,20.0155253816279,5.00366491765652,29.0524711377737,11.3404008133048,12.6649939084155,11.370957721683,77.572131575352,1.22866968250754,11.8626198555313,1.74753097704138,4.48403862988371,2.72285976512103,1.65698687863958,8.0679017574213,0.602694528023977,0,0.487932798790507,25.3629379638183,1.42800483870977,70.5273123325698,17.1741592278634,3.69560947696787,3.76627918784408,105.374086526425,124.792895963918,121.214603223066,223.037544973329,139.713900907385,337.034700459097,1.83884244895785,0.90361775633475,2.58827807116751,111.630236036215,69.5207546863491,189.372283370976,222.152158821283,204.555336419545,197.913914092857,588.002035354041,708.355447583508,699.575241694451,215.043995154976,315.148537036467,281.154926916679,238.472191865232,323.177959985155,322.404332101803,289.418546676083,378.349363543482,446.005485569872,240.287739473423,314.996525588907,316.89797863076,244.903283744929,324.758318568836,368.546514489939,296.595291707405,405.654290224182,347.799396434678,232.875017931822,414.884407852994,291.537729364363,282.954007662869,334.757282567772,349.403281686518,248.736178604176,375.989184180965,458.051273483091,251.240793592848,422.046170841749,459.819848951605,356.176412721934,378.010445337847,432.735444329288,337.435207964071,331.290225608363,254.910780501569,135.666066020834,114.178172712278,133.527496401947,586.067494056205,554.876829042326,608.424329642672,490.313025728917,523.317555056068,545.440065516805,651.790244565874,629.67547799334,380.803476334221,375.831801197401,396.799610793988,120.275909006914,95.8469642698427,136.169571828715,6.88484195398416,7.46720449223413,14.1865034309661,8.3593247695339,10.7554347989085,8.04861269749047,7.79306913631645,34.5372416344038,29.1659848400089,38.9899654467173,49.8279109327629,22.2878896322675,31.8645401521702,12.9905944636904,14.9229009604358,8.11448640058147,6.22803565280654,3.47803076516627,3.1360657141493,12.010790325942,10.3469533272519,16.1504899376836,14.1691027530922,30.9008451894374,31.9030892389645,32.3153695112447,32.9759510780322,28.7969875097441,32.4819889036099,48.5393366690235,37.7718878583681,10.2819439044614,20.8603352711136,13.7583183688659,14.6284119788377,1.34140171940727,1.79007586580942,2.53007406669196,1.50401373190767,2.60723734129483,2.3858578411533,4.86634870302636,0.567208902984407,0.886917589850256,1.58102614247627,104.062875482933,2.18577172975525,1.85392221392215,508.241218463234,526.045936381086,505.240249971688,430.237086246837,389.528534241267,342.112358724529,0.198762407366705,0,0,1.13061588384802,0,0.550236083880135,0.417989933073621,0.516833518338658,0.35576626268671,0.33472061276467,0.805658634218294,0,1.22031028774085,0.367663080345869,0,0.803697554556718,0.22452937262617,0.675668882899933,0,0,0.183201743930407,17.1314542666882,7.75560528296651,0.436094052142534,0.993943903390637,2.40597972162702,1.98613771219828,6.02356903572509,6.02936249737207,2.24271040056923,0,3.94668077467456,3.42332138939743,0.808264032418128,0.653847612453835,1.51357427644931,1.15235184896,0,0,2.2818872861778,1.34503812496621,0.352303495931295,0.161872944368132,0.280901613404497,1.63323337003915,0.859840221182376,2.06651562351531,4.75201142912821,1.23633464639278,2.73048408581408,8.62341770179486,0.673344455816265,0.500474079487857,1.10825646193673,3.95079858792754,4.29082914118628,1.20190447125277,0.907457465280168,1.79389635688862,2.56268866582281,1.05965950579781,2.70081986475962,1.54578793857658,1.54584324027377,3.53622027030021,3.54430297706659,1.94874010322397,3.02920529092937,2.94559675655358,4.52608959092673,7.81021103536552,2.01504196455281,1.52604533079439,0.966304265816484,4.90943017063502,1.43402297694502,3.90315859614705,2.51806559810822,3.02104251460748,3.10983165046111,5.04641701751257,4.01475094983413,1.56449532329816,10.2918550110862,2.76269842704961,3.71494342425583,10.1063127433742,12.1856004041039,9.27215795429559,8.43538604592187,12.2426309732957,10.2403338723431,5.21995362044413,16.4494195955401,9.61485179114196,9.61867892365976,3.69077727312324,0,4.9388881359768,8.82052268313252,5.07020139287323,5.89696330006576,23.6315962672562,2.6487785964879,3.44367627920718,0.686271241194102,3.95101027471052,1.1240175325762,0.804231779293047,0.648119116109707,0,0,0,2.66639931442677,1.76113041353732,2.30986316417718,0.462985512576611,0.761016608938393,9.4824527755113,1.71697232418975,596.830022755851,331.350039437161,434.151625045375,0.93733833986777,2.35174979478403,1.84307626415102,0.268675568108545,0,1.15014803749563,10.3459279958148,5.81119664487292,2.07328115540772,2.16179930125442,1.51490920111656,4.44485260045183,14.1335717456563,11.7217447210047,13.6857956818164,2.15937734676979,6.00686115687835,10.0039251420702,0.560655421726804,0.87192013766656,0.07333828582095,1.55126058909333,42.9187735022259,1.690605505112,2.39344304926383,0,6.68739173081569,1.41849132023278,3.72991050622539,3.57444984145369,3.25572963234866,1.64648067356154,1.30294473717494,3.909311436168,0,4.22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| |||
|short_description=p1@HLA-DMA | |||
}} |
Latest revision as of 04:33, 18 September 2015
Short description: | p1@HLA-DMA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HLA-DMA_5end |
Coexpression cluster: | C187_migratory_immature_Dendritic_CD19_CD14_Monocytederived_Macrophage |
Association with transcript: | 0bp_to_ENST00000341486, ENST00000395303, ENST00000395305, ENST00000475627, ENST00000477541_5end |
EntrezGene: | HLA-DMA |
HGNC: | 4934 |
UniProt: | B7Z4Y5Q5SP00A2AAT8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 2.63e-39 | 98 |
blood island | 2.63e-39 | 98 |
hemolymphoid system | 4.24e-34 | 108 |
bone marrow | 7.16e-30 | 76 |
immune system | 2.94e-27 | 93 |
bone element | 9.29e-25 | 82 |
adult organism | 6.30e-22 | 114 |
skeletal element | 4.39e-21 | 90 |
skeletal system | 1.80e-17 | 100 |
connective tissue | 3.61e-09 | 371 |
blood | 1.04e-07 | 15 |
haemolymphatic fluid | 1.04e-07 | 15 |
organism substance | 1.04e-07 | 15 |
lateral plate mesoderm | 3.62e-07 | 203 |