FFCP PHASE1:Hg19::chr6:32920772..32920783,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr6:32920772..32920783,-
|short_description=p3@HLA-DMA
|description=CAGE_peak_3_at_HLA-DMA_5end
|association_with_transcript=27bp_to_ENST00000475627_5end
|Ent...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3108 | |EntrezGene=3108 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4934 | |HGNC=4934 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=27bp_to_ENST00000475627_5end | |||
|cluster_id=chr6:32920772..32920783,- | |||
|coexpression_cluster_id=C26 | |||
|description=CAGE_peak_3_at_HLA-DMA_5end | |||
|id=chr6:32920772..32920783,- | |||
|ontology_enrichment_celltype=CL:0000738!3.65e-77!140;CL:0002087!1.86e-68!119;CL:0000037!1.07e-65!172;CL:0000566!1.07e-65!172;CL:0000988!2.04e-64!182;CL:0002031!5.34e-61!124;CL:0002032!4.05e-60!165;CL:0000837!4.05e-60!165;CL:0002009!6.47e-55!65;CL:0002194!1.87e-52!63;CL:0000576!1.87e-52!63;CL:0000040!1.87e-52!63;CL:0000559!1.87e-52!63;CL:0002057!2.92e-52!42;CL:0000766!1.03e-51!76;CL:0000557!1.86e-48!71;CL:0000860!1.33e-47!45;CL:0000839!3.87e-45!70;CL:0000763!1.48e-42!112;CL:0000049!1.48e-42!112;CL:0000945!1.80e-20!24;CL:0000826!1.80e-20!24;CL:0000134!1.36e-17!358;CL:0002320!1.30e-16!365;CL:0000542!7.75e-15!53;CL:0000051!7.75e-15!53;CL:0000219!3.85e-14!390;CL:0000838!4.11e-14!52;CL:0000451!2.90e-13!10;CL:0000236!3.91e-13!14;CL:0002393!1.63e-11!9;CL:0002397!1.63e-11!9;CL:0000990!3.64e-11!8;CL:0000048!1.67e-10!430;CL:0000034!4.83e-10!444;CL:0000723!6.16e-10!436;CL:0000840!7.93e-08!5;CL:0001029!7.93e-08!5;CL:0000453!2.64e-07!5;CL:0000080!3.31e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.82e-62;33!CL:0002057;1.82e-62;33!CL:0000473;2.58e-53;39!CL:0000234;2.58e-53;39!CL:0000576;1.41e-49;48!CL:0000766;5.31e-34;69!CL:0000451;4.47e-22;10!CL:0000738;1.98e-20;136!CL:0002087;1.43e-19;104!CL:0000990;2.22e-18;8!CL:0000236;1.16e-17;13!CL:0000763;9.36e-16;100!CL:0002393;6.10e-14;6!CL:0002397;6.10e-14;6!CL:0000988;5.66e-13;177!CL:0000840;1.36e-12;5!CL:0000945;6.50e-12;24!CL:0000453;1.55e-11;5!CL:0000219;9.34e-10;193!CL:0000767;3.71e-08;3!CL:0000784;3.59e-07;3!CL:0000094;5.17e-07;8!CL:0000226;5.70e-07;3!CL:0000842;5.70e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,8.51e-90,136;CL:0002009,1.06e-89,61;CL:0000473,1.30e-89,48;CL:0000234,1.30e-89,48;CL:0000860,7.13e-87,42;CL:0002057,7.13e-87,42;CL:0002194,2.15e-85,59;CL:0000576,2.15e-85,59;CL:0000040,2.15e-85,59;CL:0000559,2.15e-85,59;CL:0000766,1.12e-83,72;CL:0000557,2.08e-80,67;CL:0002087,6.42e-75,115;CL:0000839,6.90e-75,66;CL:0000037,5.15e-69,168;CL:0000988,3.64e-68,177;CL:0002031,9.69e-67,120;CL:0002032,2.04e-62,161;CL:0000837,2.04e-62,161;CL:0000763,2.26e-62,108;CL:0000049,2.26e-62,108;CL:0000134,3.87e-26,354;CL:0002320,3.07e-25,361;CL:0000219,4.50e-22,386;CL:0000451,4.94e-22,10;CL:0002393,5.76e-19,9;CL:0002397,5.76e-19,9;CL:0000990,2.35e-18,8;CL:0000048,3.30e-18,427;CL:0000034,1.03e-17,441;CL:0000723,1.13e-17,433;CL:0000236,2.13e-16,14;CL:0000840,1.60e-12,5;CL:0001029,1.60e-12,5;CL:0000945,5.50e-12,24;CL:0000826,5.50e-12,24;CL:0000453,1.30e-11,5;CL:0000767,3.59e-08,3;CL:0000784,4.18e-07,3;CL:0000094,4.39e-07,8;CL:0000226,4.65e-07,3;CL:0000842,4.65e-07,3 | |||
|ontology_enrichment_development_v019=CL:0002057;2.13e-61;42!CL:0000049;2.57e-17;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!7.11e-53!102;UBERON:0003061!7.11e-53!102;UBERON:0002193!2.65e-47!112;UBERON:0002371!1.00e-43!80;UBERON:0001474!3.72e-39!86;UBERON:0002405!1.94e-31!115;UBERON:0004765!3.54e-30!101;UBERON:0001434!3.54e-30!101;UBERON:0002384!8.91e-16!375;UBERON:0003081!1.98e-14!216;UBERON:0002204!5.82e-13!167;UBERON:0000178!2.12e-07!15;UBERON:0000179!2.12e-07!15;UBERON:0000463!2.12e-07!15 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.46e-69,76;UBERON:0002390,6.90e-64,98;UBERON:0003061,6.90e-64,98;UBERON:0001474,4.61e-63,82;UBERON:0002193,1.39e-58,108;UBERON:0004765,3.69e-56,90;UBERON:0002405,4.78e-56,93;UBERON:0001434,4.48e-49,100;UBERON:0002384,5.17e-24,371;UBERON:0003081,1.16e-23,203;UBERON:0002204,1.56e-23,167;UBERON:0000926,2.32e-12,315;UBERON:0004120,2.32e-12,315;UBERON:0006603,2.32e-12,315 | |||
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| ||
|short_description=p3@HLA-DMA | |||
}} | }} |
Latest revision as of 04:33, 18 September 2015
Short description: | p3@HLA-DMA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_HLA-DMA_5end |
Coexpression cluster: | C26_Eosinophils_Neutrophils_CD14_CD14CD16_Basophils_Monocytederived_Whole |
Association with transcript: | 27bp_to_ENST00000475627_5end |
EntrezGene: | HLA-DMA |
HGNC: | 4934 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bone marrow | 3.46e-69 | 76 |
hematopoietic system | 6.90e-64 | 98 |
blood island | 6.90e-64 | 98 |
bone element | 4.61e-63 | 82 |
hemolymphoid system | 1.39e-58 | 108 |
skeletal element | 3.69e-56 | 90 |
immune system | 4.78e-56 | 93 |
skeletal system | 4.48e-49 | 100 |
connective tissue | 5.17e-24 | 371 |
lateral plate mesoderm | 1.16e-23 | 203 |
musculoskeletal system | 1.56e-23 | 167 |
mesoderm | 2.32e-12 | 315 |
mesoderm-derived structure | 2.32e-12 | 315 |
presumptive mesoderm | 2.32e-12 | 315 |