FFCP PHASE1:Hg19::chr11:47291645..47291727,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr11:47291645..47291727,+ to FFCP PHASE1:Hg19::chr11:47291645..47291727,+: NSchange) |
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(11 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=8567 | |EntrezGene=8567 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6766 | |HGNC=6766 | ||
|TSSclassifier=strong | |||
|UniProt=Q8WXG6 | |UniProt=Q8WXG6 | ||
|association_with_transcript=0bp_to_ENST00000395336,ENST00000402192,ENST00000526603,NM_001135943,NM_130475,NM_130476,uc001new.2,uc001nex.2,uc001nez.2_5end | |||
|cluster_id=chr11:47291645..47291727,+ | |||
|description=CAGE_peak_1_at_MADD_5end | |||
|id=chr11:47291645..47291727,+ | |||
|ontology_enrichment_celltype=CL:0000037!2.16e-23!172;CL:0000566!2.16e-23!172;CL:0002032!1.35e-21!165;CL:0000837!1.35e-21!165;CL:0000988!7.90e-21!182;CL:0000738!2.70e-19!140;CL:0000763!5.37e-16!112;CL:0000049!5.37e-16!112;CL:0002031!3.02e-13!124;CL:0002087!1.28e-12!119;CL:0000766!2.02e-11!76;CL:0000557!1.51e-09!71;CL:0000860!5.84e-08!45;CL:0000839!2.05e-07!70;CL:0000791!2.34e-07!18;CL:0000789!2.34e-07!18;CL:0002420!2.34e-07!18;CL:0002419!2.34e-07!18;CL:0000790!2.34e-07!18;CL:0002009!2.43e-07!65;CL:0002057!5.70e-07!42 | |||
|ontology_enrichment_celltype_v019=CL:0000791;2.60e-07;18!CL:0000789;2.60e-07;18!CL:0002419;2.60e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,1.69e-22,168;CL:0002032,1.00e-20,161;CL:0000837,1.00e-20,161;CL:0000988,4.34e-20,177;CL:0000738,1.86e-18,136;CL:0000763,3.39e-15,108;CL:0000049,3.39e-15,108;CL:0002031,1.71e-12,120;CL:0002087,7.11e-12,115;CL:0000766,1.14e-10,72;CL:0000557,8.03e-09,67;CL:0000791,2.34e-07,18;CL:0000789,2.34e-07,18;CL:0002420,2.34e-07,18;CL:0002419,2.34e-07,18;CL:0000790,2.34e-07,18;CL:0000860,5.70e-07,42;CL:0002057,5.70e-07,42;CL:0000839,9.67e-07,66 | |||
|ontology_enrichment_development_v019=CL:0000790;2.60e-07;18!UBERON:0006601;3.38e-07;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!6.25e-30!115;UBERON:0001049!1.40e-22!57;UBERON:0005068!1.40e-22!57;UBERON:0006241!1.40e-22!57;UBERON:0007135!1.40e-22!57;UBERON:0002616!8.37e-19!59;UBERON:0000955!1.03e-18!69;UBERON:0006238!1.03e-18!69;UBERON:0003080!1.47e-18!42;UBERON:0002780!2.82e-18!41;UBERON:0001890!2.82e-18!41;UBERON:0006240!2.82e-18!41;UBERON:0001017!3.71e-18!82;UBERON:0000073!8.76e-18!94;UBERON:0001016!8.76e-18!94;UBERON:0005743!3.53e-17!86;UBERON:0001893!8.99e-15!34;UBERON:0002020!9.98e-15!34;UBERON:0003528!9.98e-15!34;UBERON:0002619!1.80e-14!22;UBERON:0002791!3.69e-14!33;UBERON:0001869!4.71e-14!32;UBERON:0003075!5.19e-14!86;UBERON:0007284!5.19e-14!86;UBERON:0002346!7.03e-14!90;UBERON:0001950!2.46e-13!20;UBERON:0002390!4.34e-12!102;UBERON:0003061!4.34e-12!102;UBERON:0003056!2.95e-11!61;UBERON:0000956!8.24e-11!25;UBERON:0000203!8.24e-11!25;UBERON:0002193!2.72e-10!112;UBERON:0002371!8.17e-08!80;UBERON:0000153!2.30e-07!129;UBERON:0007811!2.30e-07!129;UBERON:0001474!4.84e-07!86;UBERON:0000033!9.75e-07!123 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;1.58e-14;22!UBERON:0001950;2.18e-13;20!UBERON:0002780;2.19e-13;41!UBERON:0001890;2.19e-13;41!UBERON:0001869;1.32e-12;32!UBERON:0001893;1.59e-12;34!UBERON:0003528;1.66e-12;34!UBERON:0002020;1.66e-12;34!UBERON:0002791;2.22e-12;32!UBERON:0000073;4.73e-12;53!UBERON:0002616;4.73e-12;53!UBERON:0000956;9.01e-11;25!UBERON:0000203;9.01e-11;25!UBERON:0000955;4.02e-09;68!UBERON:0007023;8.01e-09;114!UBERON:0001017;1.27e-08;75!UBERON:0001016;2.04e-08;83 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.37e-29,114;UBERON:0001049,2.78e-22,56;UBERON:0005068,2.78e-22,56;UBERON:0006241,2.78e-22,56;UBERON:0007135,2.78e-22,56;UBERON:0000073,4.18e-21,53;UBERON:0002616,4.18e-21,53;UBERON:0000955,2.06e-18,68;UBERON:0006238,2.06e-18,68;UBERON:0001016,2.09e-18,89;UBERON:0002780,2.82e-18,41;UBERON:0001890,2.82e-18,41;UBERON:0003080,2.82e-18,41;UBERON:0006240,2.82e-18,41;UBERON:0001017,7.37e-18,81;UBERON:0001893,8.99e-15,34;UBERON:0003528,9.98e-15,34;UBERON:0002020,9.98e-15,34;UBERON:0002619,1.80e-14,22;UBERON:0003075,2.25e-14,82;UBERON:0007284,2.25e-14,82;UBERON:0002346,3.25e-14,86;UBERON:0001869,4.71e-14,32;UBERON:0002791,8.53e-14,32;UBERON:0001950,2.46e-13,20;UBERON:0002390,2.41e-11,98;UBERON:0003061,2.41e-11,98;UBERON:0003056,2.48e-11,61;UBERON:0000956,8.24e-11,25;UBERON:0000203,8.24e-11,25;UBERON:0002193,1.36e-09,108;UBERON:0010371,5.45e-08,104;UBERON:0002371,3.82e-07,76;UBERON:0002405,5.02e-07,93 | |||
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| ||
|short_description=p1@MADD | |||
}} | }} |
Latest revision as of 04:19, 18 September 2015
Short description: | p1@MADD |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_MADD_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000395336, ENST00000402192, ENST00000526603, NM_001135943, NM_130475, NM_130476, uc001new.2, uc001nex.2, uc001nez.2_5end |
EntrezGene: | MADD |
HGNC: | 6766 |
UniProt: | Q8WXG6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 1.69e-22 | 168 |
hematopoietic oligopotent progenitor cell | 1.00e-20 | 161 |
hematopoietic multipotent progenitor cell | 1.00e-20 | 161 |
hematopoietic cell | 4.34e-20 | 177 |
leukocyte | 1.86e-18 | 136 |
myeloid cell | 3.39e-15 | 108 |
common myeloid progenitor | 3.39e-15 | 108 |
hematopoietic lineage restricted progenitor cell | 1.71e-12 | 120 |
nongranular leukocyte | 7.11e-12 | 115 |
myeloid leukocyte | 1.14e-10 | 72 |
granulocyte monocyte progenitor cell | 8.03e-09 | 67 |
mature alpha-beta T cell | 2.34e-07 | 18 |
alpha-beta T cell | 2.34e-07 | 18 |
immature T cell | 2.34e-07 | 18 |
mature T cell | 2.34e-07 | 18 |
immature alpha-beta T cell | 2.34e-07 | 18 |
classical monocyte | 5.70e-07 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.70e-07 | 42 |
myeloid lineage restricted progenitor cell | 9.67e-07 | 66 |
Ontology term | p-value | n |
---|---|---|
adult organism | 2.37e-29 | 114 |
neural tube | 2.78e-22 | 56 |
neural rod | 2.78e-22 | 56 |
future spinal cord | 2.78e-22 | 56 |
neural keel | 2.78e-22 | 56 |
regional part of nervous system | 4.18e-21 | 53 |
regional part of brain | 4.18e-21 | 53 |
brain | 2.06e-18 | 68 |
future brain | 2.06e-18 | 68 |
nervous system | 2.09e-18 | 89 |
regional part of forebrain | 2.82e-18 | 41 |
forebrain | 2.82e-18 | 41 |
anterior neural tube | 2.82e-18 | 41 |
future forebrain | 2.82e-18 | 41 |
central nervous system | 7.37e-18 | 81 |
telencephalon | 8.99e-15 | 34 |
brain grey matter | 9.98e-15 | 34 |
gray matter | 9.98e-15 | 34 |
regional part of cerebral cortex | 1.80e-14 | 22 |
neural plate | 2.25e-14 | 82 |
presumptive neural plate | 2.25e-14 | 82 |
neurectoderm | 3.25e-14 | 86 |
cerebral hemisphere | 4.71e-14 | 32 |
regional part of telencephalon | 8.53e-14 | 32 |
neocortex | 2.46e-13 | 20 |
hematopoietic system | 2.41e-11 | 98 |
blood island | 2.41e-11 | 98 |
pre-chordal neural plate | 2.48e-11 | 61 |
cerebral cortex | 8.24e-11 | 25 |
pallium | 8.24e-11 | 25 |
hemolymphoid system | 1.36e-09 | 108 |
ecto-epithelium | 5.45e-08 | 104 |
bone marrow | 3.82e-07 | 76 |
immune system | 5.02e-07 | 93 |