FFCP PHASE1:Hg19::chr6:32731327..32731340,-: Difference between revisions
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|id=chr6:32731327..32731340,-
|short_description=p3@HLA-DQB2
|description=CAGE_peak_3_at_HLA-DQB2_5end
|association_with_transcript=0bp_to_NM_001198858,uc003oby.3,u...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3120 | |EntrezGene=3120 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4945 | |HGNC=4945 | ||
|TSSclassifier=strong | |||
|UniProt=Q5SR06,A2ADX3 | |UniProt=Q5SR06,A2ADX3 | ||
|association_with_transcript=0bp_to_NM_001198858,uc003oby.3,uc003obz.2_5end | |||
|cluster_id=chr6:32731327..32731340,- | |||
|coexpression_cluster_id=C80 | |||
|description=CAGE_peak_3_at_HLA-DQB2_5end | |||
|id=chr6:32731327..32731340,- | |||
|ontology_enrichment_celltype=CL:0000990!2.10e-36!8;CL:0000451!1.46e-29!10;CL:0000453!3.15e-27!5;CL:0000840!1.50e-21!5;CL:0001029!1.50e-21!5;CL:0001014!5.07e-12!2;CL:0001016!5.07e-12!2 | |||
|ontology_enrichment_celltype_v019=CL:0000453;1.65e-140;5!CL:0000990;1.98e-78;8!CL:0000451;2.63e-64;10!CL:0001014;1.13e-57;2!CL:0001016;1.13e-57;2!CL:0000840;4.86e-20;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000453,1.65e-140,5;CL:0000990,1.98e-78,8;CL:0000451,2.63e-64,10;CL:0001014,1.13e-57,2;CL:0001016,1.13e-57,2;CL:0000840,4.86e-20,5;CL:0001029,4.86e-20,5;CL:0000763,7.91e-07,108;CL:0000049,7.91e-07,108 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!5.40e-13!115;UBERON:0003408!1.22e-08!10;UBERON:0001042!1.22e-08!10;UBERON:0009145!1.22e-08!10;UBERON:0006562!7.39e-08!11;UBERON:0004177!3.24e-07!7;UBERON:0002372!9.81e-07!1;UBERON:0001961!9.81e-07!1;UBERON:0001744!9.81e-07!1;UBERON:0001735!9.81e-07!1 | |||
|ontology_enrichment_uberon_v019=UBERON:0002372;3.64e-29;1!UBERON:0001961;3.64e-29;1!UBERON:0001744;3.64e-29;1!UBERON:0001042;3.64e-29;1!UBERON:0001735;3.64e-29;1!UBERON:0006562;2.55e-15;2!UBERON:0000161;7.18e-07;19!UBERON:0000166;7.18e-07;19 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002372,3.16e-29,1;UBERON:0001961,3.16e-29,1;UBERON:0001744,3.16e-29,1;UBERON:0001735,3.16e-29,1 | |||
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|short_description=p3@HLA-DQB2 | |||
}} | }} |
Latest revision as of 03:56, 18 September 2015
Short description: | p3@HLA-DQB2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_HLA-DQB2_5end |
Coexpression cluster: | C80_immature_migratory_CD14_Dendritic_splenic_cord_Mast |
Association with transcript: | 0bp_to_NM_001198858, uc003oby.3, uc003obz.2_5end |
EntrezGene: | HLA-DQB2 |
HGNC: | 4945 |
UniProt: | Q5SR06A2ADX3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Langerhans cell | 1.65e-140 | 5 |
conventional dendritic cell | 1.98e-78 | 8 |
dendritic cell | 2.63e-64 | 10 |
CD1a-positive Langerhans cell | 1.13e-57 | 2 |
immature CD1a-positive Langerhans cell | 1.13e-57 | 2 |
immature conventional dendritic cell | 4.86e-20 | 5 |
common dendritic progenitor | 4.86e-20 | 5 |
myeloid cell | 7.91e-07 | 108 |
common myeloid progenitor | 7.91e-07 | 108 |
Ontology term | p-value | n |
---|---|---|
tonsil | 3.16e-29 | 1 |
mucosa-associated lymphoid tissue | 3.16e-29 | 1 |
lymphoid tissue | 3.16e-29 | 1 |
tonsillar ring | 3.16e-29 | 1 |