FFCP PHASE1:Hg19::chr8:38261817..38261833,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=137994 | |EntrezGene=137994 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14648 | |HGNC=14648 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-24bp_to_ENST00000530448_5end | |association_with_transcript=-24bp_to_ENST00000530448_5end | ||
|cluster_id=chr8:38261817..38261833,+ | |||
|coexpression_cluster_id=C2011 | |||
|description=CAGE_peak_4_at_LETM2_5end | |description=CAGE_peak_4_at_LETM2_5end | ||
|id=chr8:38261817..38261833,+ | |id=chr8:38261817..38261833,+ | ||
|ontology_enrichment_celltype=CL:0000066!6.38e-32!254;CL:0000548!8.44e-19!679;CL:0000004!8.44e-19!679;CL:0000255!8.44e-19!679;CL:0000220!1.08e-18!246;CL:0000012!2.88e-18!682;CL:0002321!3.59e-18!248;CL:0000076!2.73e-14!62;CL:0000063!1.96e-13!578;CL:0000003!2.03e-13!722;CL:0002076!7.39e-12!43;CL:0000222!1.85e-09!119;CL:0000223!4.51e-09!59;CL:0000077!7.63e-09!19;CL:0000144!8.14e-09!625;CL:0000213!2.43e-08!57;CL:0000215!2.43e-08!57;CL:0002368!8.30e-08!13 | |ontology_enrichment_celltype=CL:0000066!6.38e-32!254;CL:0000548!8.44e-19!679;CL:0000004!8.44e-19!679;CL:0000255!8.44e-19!679;CL:0000220!1.08e-18!246;CL:0000012!2.88e-18!682;CL:0002321!3.59e-18!248;CL:0000076!2.73e-14!62;CL:0000063!1.96e-13!578;CL:0000003!2.03e-13!722;CL:0002076!7.39e-12!43;CL:0000222!1.85e-09!119;CL:0000223!4.51e-09!59;CL:0000077!7.63e-09!19;CL:0000144!8.14e-09!625;CL:0000213!2.43e-08!57;CL:0000215!2.43e-08!57;CL:0002368!8.30e-08!13 | ||
|ontology_enrichment_celltype_v019=CL:0000077;2.34e-13;19!CL:0002368;2.30e-12;13!CL:0002076;5.78e-09;42!CL:0000076;6.29e-09;63!CL:0002202;1.07e-08;9!CL:0002632;1.07e-08;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.24e-26,253;CL:0000076,1.32e-16,63;CL:0002321,3.78e-14,250;CL:0000077,2.08e-13,19;CL:0002368,2.84e-12,13;CL:0002076,2.20e-11,42;CL:0000213,3.70e-10,58;CL:0000215,3.70e-10,58;CL:0000223,1.17e-08,58;CL:0002202,1.21e-08,9;CL:0002632,1.21e-08,9 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!3.63e-07!106;DOID:120!3.75e-07!27;DOID:193!6.44e-07!29 | |||
|ontology_enrichment_disease_v019=DOID:120;8.10e-07;27 | |||
|ontology_enrichment_disease_v019_2=DOID:120,5.39e-07,27;DOID:2394,8.80e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0003100!4.50e-08!41;UBERON:0003102!7.64e-08!95;UBERON:0003134!6.42e-07!37;UBERON:0000474!6.42e-07!37;UBERON:0004119!8.48e-07!169;UBERON:0000925!8.48e-07!169;UBERON:0006595!8.48e-07!169 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005157,8.62e-07,47 | |||
|phase1_expression=0.181678379270557,0,0,0,0,0,0,1.89515962028049,0,1.72013755551056,4.18680700783456,0.873765488520689,0.791300934685361,0.37129905888014,0,0.672325146451775,0.602694528023977,0,0,0,0,0,0.286235987131057,0.410623275218653,0.502170558379211,0,0,0,0,0,0.154816123316076,6.43594857135249,4.51808878167375,4.43704812200145,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309706370895104,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222820913770347,0,0,0.270803863765016,0.512365278902701,0.780356085359269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0,0.361439152384566,0,0.144846518960824,0,0,0.378139268656271,0,0.614843499851882,0.0654895377488563,1.82147644146271,1.85392221392215,0,0,0,0,0,0,0.79504962946682,0,1.04142150482278,1.13061588384802,2.09749718104953,0.550236083880135,1.04497483268405,0.516833518338658,0.71153252537342,0,1.20848795132744,4.56163263431108,0,0.367663080345869,0,0.446498641420399,0.898117490504679,1.0135033243499,0,0,0.366403487860815,0,0,3.48875241714027,0,0.25326102332916,0.529636723252875,0.286836620748814,0.354668382198357,0,1.06748995729705,0.74000264525148,0,0.269421344139376,1.47115712802113,0.302714855289863,0,3.51482147750695,0,1.1409436430889,0.298897361103602,1.40921398372518,0.971237666208789,1.26405726032024,0.204154171254893,1.10550885580591,0.309977343527296,0,0,2.73048408581408,0.718618141816238,0.505008341862199,0.375355559615893,0.277064115484183,0.438977620880838,0,0.150238058906597,1.24775401476023,0.538168907066586,0,0,0.600182192168805,0.103052529238439,0.515281080091258,0,0.168776332241266,0.0974370051611986,0.252433774244115,0.0920498986422993,0,0,0.403008392910561,0.847802961552438,5.21804303540901,6.2731607735892,3.15485054927904,0,0,0,0,0,0,0,0.643240938192885,1.38134921352481,0,0,0.354920400119532,0.505754070234305,0.723033089650446,0.992645754591546,0.653638332277218,2.13543557199987,1.07865046528132,0.588664395376038,1.53898862778556,0,1.40241773803446,0,0,0,0,0,0,0.491953754172454,0.857839051492628,3.18275827685014,1.1240175325762,0,2.59247646443883,0.977424915930974,3.11980435583874,1.44331342025273,0,0.587043471179108,2.16549671641611,3.24089858803628,0,0,0,0,0.234004265139238,0,14.0600750980165,3.86358894857377,5.10390350072591,7.25424033893071,5.81267877027924,3.06706143332169,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,1.45770409648969,0,1.10007428731425,0.517086863031111,0,2.535908257668,0.26593811658487,0,0.514414748524284,0,1.0656887160644,0.285955987316295,0,0,3.25736184293735,0,3.16780749173372,1.20575750823834,0,3.29910870900788,0,0,0,0.718874566474748,1.14861935834114,0,0.579125226670317,0.410952645100767,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.271265023699736,0,0,0.315404830067869,0.234282829985426,0.300946099727719,0,0,0,0.553107505625109,0.260650843404249,0,0,0,0,0,1.21251028578504,1.66435439510497,0.604780586659361,0,0,0,0,0,0.160853921143607,0,1.69630663182921,0.710246901252508,1.23190734020714,2.59627214591811,1.16210378459959,0,3.20810352485256,2.5782676902051,0.68888668898764,0.182091168006717,0,0.451199612907412,0.308061348417659,0.784349769176855,0,0.422206515571503,0,1.53084334748864,1.0795795805107,0,0.812839312631559,0.501689773854853,2.80363900349542,4.15538004464362,2.0148727924996,0,0,0,0.656029291399411,0.325378394664303,0,0,0,8.03971753194641,6.50060246036521,0,0.290012154876366,1.23238893691716,0.460511024178389,1.92971201478343,0,0.145016693914229,1.02271952899321,0.0890320356467374,1.98341898433174,4.22818148203234,3.1903178123646,1.0115778085555,0.929691098594572,0.62962469366128,0,0.308033580176089,2.12922412126809,0,0,0.143124886741991,0,0,0,0.255897791311334,0,0,1.56989728039846,0.359744915166629,0,0.353437207037059,1.41527737101321,0,1.68503382495592,0.975267478179181,0.487426979262569,0,0.272999822815972,0,1.13008116620243,0,0,0,0,0,0.405820753925408,0,0.563391205064483,1.86434757865267,0.589494246078727,0.35667105148125,0.709522128141196,0,0,0.75894634753143,1.04980416073495,3.27155183266741,3.35151137767894,4.3556393944529,0,3.44404298136984,5.05414427002877,0,1.1486170010348,0,0,0,0,0,0,0,0,0,0,0.490080431962063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.68426486367398,0,0,0,0,8.83354593529453,1.18785872333055,15.6651958070608,0,0,0.556543525114529,11.5362711958732,0,0,0,0,0.306806047506464,0,0,7.3692047940808,0.179021174675609,0,0,0,2.22273980289274,0,0,0,0,0,0,0.227586896570999,1.01701460117107,0,0,0,0,0,0,0,0,0,0,0,1.25481369850743,0,0,0.23056390438806,0.718061155278177,0,8.61303131276183,0.732780747214898,7.46248686426089,0,0,0,0,0,0.335643173951685,0.189753732724185,0,3.58696709697646,6.52931232636591,0,0,0,0,0,0,0,0,0,0,0,0,1.76098157038881,0,0,0,0,0,0.300646838828985,0,0,0,0,0,0.569219092059585,0.138674673013139,0.173559738335131,1.46988596121566,6.44238128694979,0,0.859930162358083,0.0967563312890851,0,0.0821154570532092,0.0969890164884194,0,0,9.31885087597906,1.39100228192093,0,0,1.20238230377301,0,0.19980960958213,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| ||
|short_description=p4@LETM2 | |short_description=p4@LETM2 | ||
}} | }} |
Latest revision as of 03:33, 18 September 2015
Short description: | p4@LETM2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_LETM2_5end |
Coexpression cluster: | C2011_mucinous_mesothelioma_squamous_glioblastoma_anaplastic_Mallassezderived_amniotic |
Association with transcript: | -24bp_to_ENST00000530448_5end |
EntrezGene: | LETM2 |
HGNC: | 14648 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.24e-26 | 253 |
squamous epithelial cell | 1.32e-16 | 63 |
embryonic cell | 3.78e-14 | 250 |
mesothelial cell | 2.08e-13 | 19 |
respiratory epithelial cell | 2.84e-12 | 13 |
endo-epithelial cell | 2.20e-11 | 42 |
lining cell | 3.70e-10 | 58 |
barrier cell | 3.70e-10 | 58 |
endodermal cell | 1.17e-08 | 58 |
epithelial cell of tracheobronchial tree | 1.21e-08 | 9 |
epithelial cell of lower respiratory tract | 1.21e-08 | 9 |
Ontology term | p-value | n |
---|---|---|
epithelial fold | 8.62e-07 | 47 |
Ontology term | p-value | n |
---|---|---|
female reproductive organ cancer | 5.39e-07 | 27 |
ovarian cancer | 8.80e-07 | 14 |