FFCP PHASE1:Hg19::chr8:38243967..38244068,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr8:38243967..38244068,+ to FFCP PHASE1:Hg19::chr8:38243967..38244068,+: NSchange) |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=137994 | |EntrezGene=137994 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14648 | |HGNC=14648 | ||
|TSSclassifier=strong | |||
|UniProt=Q2VYF4,E5RJN4,E5RK40,E9PMA4,A8K1M9 | |UniProt=Q2VYF4,E5RJN4,E5RK40,E9PMA4,A8K1M9 | ||
|association_with_transcript=0bp_to_ENST00000379957,ENST00000518121,ENST00000518883,ENST00000523268,ENST00000523983,ENST00000524874,uc003xlk.2,uc003xll.1,uc003xlm.1,uc003xln.1,uc011lbn.1_5end | |||
|cluster_id=chr8:38243967..38244068,+ | |||
|coexpression_cluster_id=C8 | |||
|description=CAGE_peak_1_at_LETM2_5end | |||
|id=chr8:38243967..38244068,+ | |||
|ontology_enrichment_celltype=CL:0000738!5.74e-20!140;CL:0000037!1.03e-18!172;CL:0000566!1.03e-18!172;CL:0000988!7.25e-18!182;CL:0002032!1.15e-16!165;CL:0000837!1.15e-16!165;CL:0002031!2.98e-15!124;CL:0002087!8.72e-15!119;CL:0002057!4.40e-14!42;CL:0000860!5.97e-12!45;CL:0000766!1.53e-09!76;CL:0000838!2.38e-09!52;CL:0000542!3.79e-09!53;CL:0000051!3.79e-09!53;CL:0000763!1.98e-08!112;CL:0000049!1.98e-08!112;CL:0000557!3.07e-08!71;CL:0000084!5.93e-08!25;CL:0000827!5.93e-08!25 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.84e-09;33!CL:0002057;2.84e-09;33!CL:0000576;4.15e-08;48!CL:0000084;9.69e-08;25!CL:0002087;5.19e-07;104!CL:0000766;5.69e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,1.49e-21,136;CL:0000037,6.62e-20,168;CL:0000988,2.94e-19,177;CL:0002032,8.60e-18,161;CL:0000837,8.60e-18,161;CL:0002031,1.36e-16,120;CL:0002087,3.36e-16,115;CL:0000860,3.71e-14,42;CL:0002057,3.71e-14,42;CL:0000766,3.86e-11,72;CL:0000473,6.38e-10,48;CL:0000234,6.38e-10,48;CL:0000557,9.70e-10,67;CL:0000763,1.81e-09,108;CL:0000049,1.81e-09,108;CL:0000838,3.74e-09,52;CL:0000542,5.89e-09,53;CL:0000051,5.89e-09,53;CL:0000084,5.43e-08,25;CL:0000827,5.43e-08,25;CL:0002009,1.07e-07,61;CL:0000839,1.50e-07,66;CL:0002194,5.40e-07,59;CL:0000576,5.40e-07,59;CL:0000040,5.40e-07,59;CL:0000559,5.40e-07,59 | |||
|ontology_enrichment_development_v019=CL:0002057;3.06e-10;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!2.84e-13!57;UBERON:0005068!2.84e-13!57;UBERON:0006241!2.84e-13!57;UBERON:0007135!2.84e-13!57;UBERON:0000073!3.72e-13!94;UBERON:0001016!3.72e-13!94;UBERON:0005743!4.08e-12!86;UBERON:0002390!7.86e-12!102;UBERON:0003061!7.86e-12!102;UBERON:0001017!8.05e-12!82;UBERON:0002780!8.62e-12!41;UBERON:0001890!8.62e-12!41;UBERON:0006240!8.62e-12!41;UBERON:0003080!1.50e-11!42;UBERON:0000955!6.86e-11!69;UBERON:0006238!6.86e-11!69;UBERON:0001869!1.25e-10!32;UBERON:0002193!1.40e-10!112;UBERON:0002020!2.85e-10!34;UBERON:0003528!2.85e-10!34;UBERON:0001893!4.18e-10!34;UBERON:0002791!6.62e-10!33;UBERON:0002616!9.99e-10!59;UBERON:0002346!1.11e-09!90;UBERON:0003075!2.17e-09!86;UBERON:0007284!2.17e-09!86;UBERON:0003056!5.69e-09!61;UBERON:0000956!2.86e-08!25;UBERON:0000203!2.86e-08!25;UBERON:0002619!1.56e-07!22;UBERON:0002371!2.26e-07!80;UBERON:0001950!6.92e-07!20;UBERON:0001474!9.74e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;5.70e-10;32!UBERON:0003528;1.60e-09;34!UBERON:0002020;1.60e-09;34!UBERON:0001893;1.71e-09;34!UBERON:0002791;2.15e-09;32!UBERON:0002780;5.93e-09;41!UBERON:0001890;5.93e-09;41!UBERON:0000956;1.54e-08;25!UBERON:0000203;1.54e-08;25!UBERON:0000073;6.17e-08;53!UBERON:0002616;6.17e-08;53!UBERON:0002619;9.77e-08;22!UBERON:0001950;4.48e-07;20 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,1.81e-13,56;UBERON:0005068,1.81e-13,56;UBERON:0006241,1.81e-13,56;UBERON:0007135,1.81e-13,56;UBERON:0002390,1.93e-13,98;UBERON:0003061,1.93e-13,98;UBERON:0001016,6.73e-13,89;UBERON:0000073,9.24e-13,53;UBERON:0002616,9.24e-13,53;UBERON:0001017,5.89e-12,81;UBERON:0002193,5.91e-12,108;UBERON:0002780,7.50e-12,41;UBERON:0001890,7.50e-12,41;UBERON:0003080,7.50e-12,41;UBERON:0006240,7.50e-12,41;UBERON:0000955,4.96e-11,68;UBERON:0006238,4.96e-11,68;UBERON:0001869,1.10e-10,32;UBERON:0003528,2.53e-10,34;UBERON:0002020,2.53e-10,34;UBERON:0001893,3.72e-10,34;UBERON:0002791,8.03e-10,32;UBERON:0002346,3.65e-09,86;UBERON:0003056,7.11e-09,61;UBERON:0003075,7.15e-09,82;UBERON:0007284,7.15e-09,82;UBERON:0002371,1.05e-08,76;UBERON:0002405,2.35e-08,93;UBERON:0000956,2.61e-08,25;UBERON:0000203,2.61e-08,25;UBERON:0001474,6.22e-08,82;UBERON:0002619,1.43e-07,22;UBERON:0001950,6.44e-07,20 | |||
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| ||
|short_description=p1@LETM2 | |||
}} | }} |
Latest revision as of 03:31, 18 September 2015
Short description: | p1@LETM2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LETM2_5end |
Coexpression cluster: | C8_Natural_CD8_Basophils_CD4_CD14_Peripheral_CD34 |
Association with transcript: | 0bp_to_ENST00000379957, ENST00000518121, ENST00000518883, ENST00000523268, ENST00000523983, ENST00000524874, uc003xlk.2, uc003xll.1, uc003xlm.1, uc003xln.1, uc011lbn.1_5end |
EntrezGene: | LETM2 |
HGNC: | 14648 |
UniProt: | Q2VYF4E5RJN4E5RK40E9PMA4A8K1M9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 1.49e-21 | 136 |
hematopoietic stem cell | 6.62e-20 | 168 |
hematopoietic cell | 2.94e-19 | 177 |
hematopoietic oligopotent progenitor cell | 8.60e-18 | 161 |
hematopoietic multipotent progenitor cell | 8.60e-18 | 161 |
hematopoietic lineage restricted progenitor cell | 1.36e-16 | 120 |
nongranular leukocyte | 3.36e-16 | 115 |
classical monocyte | 3.71e-14 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.71e-14 | 42 |
myeloid leukocyte | 3.86e-11 | 72 |
defensive cell | 6.38e-10 | 48 |
phagocyte | 6.38e-10 | 48 |
granulocyte monocyte progenitor cell | 9.70e-10 | 67 |
myeloid cell | 1.81e-09 | 108 |
common myeloid progenitor | 1.81e-09 | 108 |
lymphoid lineage restricted progenitor cell | 3.74e-09 | 52 |
lymphocyte | 5.89e-09 | 53 |
common lymphoid progenitor | 5.89e-09 | 53 |
T cell | 5.43e-08 | 25 |
pro-T cell | 5.43e-08 | 25 |
macrophage dendritic cell progenitor | 1.07e-07 | 61 |
myeloid lineage restricted progenitor cell | 1.50e-07 | 66 |
monopoietic cell | 5.40e-07 | 59 |
monocyte | 5.40e-07 | 59 |
monoblast | 5.40e-07 | 59 |
promonocyte | 5.40e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
neural tube | 1.81e-13 | 56 |
neural rod | 1.81e-13 | 56 |
future spinal cord | 1.81e-13 | 56 |
neural keel | 1.81e-13 | 56 |
hematopoietic system | 1.93e-13 | 98 |
blood island | 1.93e-13 | 98 |
nervous system | 6.73e-13 | 89 |
regional part of nervous system | 9.24e-13 | 53 |
regional part of brain | 9.24e-13 | 53 |
central nervous system | 5.89e-12 | 81 |
hemolymphoid system | 5.91e-12 | 108 |
regional part of forebrain | 7.50e-12 | 41 |
forebrain | 7.50e-12 | 41 |
anterior neural tube | 7.50e-12 | 41 |
future forebrain | 7.50e-12 | 41 |
brain | 4.96e-11 | 68 |
future brain | 4.96e-11 | 68 |
cerebral hemisphere | 1.10e-10 | 32 |
brain grey matter | 2.53e-10 | 34 |
gray matter | 2.53e-10 | 34 |
telencephalon | 3.72e-10 | 34 |
regional part of telencephalon | 8.03e-10 | 32 |
neurectoderm | 3.65e-09 | 86 |
pre-chordal neural plate | 7.11e-09 | 61 |
neural plate | 7.15e-09 | 82 |
presumptive neural plate | 7.15e-09 | 82 |
bone marrow | 1.05e-08 | 76 |
immune system | 2.35e-08 | 93 |
cerebral cortex | 2.61e-08 | 25 |
pallium | 2.61e-08 | 25 |
bone element | 6.22e-08 | 82 |
regional part of cerebral cortex | 1.43e-07 | 22 |
neocortex | 6.44e-07 | 20 |