FFCP PHASE1:Hg19::chr11:46615557..46615608,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr11:46615557..46615608,-
|short_description=p1@AMBRA1
|description=CAGE_peak_1_at_AMBRA1_5end
|association_with_transcript=0bp_to_ENST00000528950,ENST00000534...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=55626 | |EntrezGene=55626 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25990 | |HGNC=25990 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000528950,ENST00000534300,uc001ncv.2,uc001ncw.2,uc001ncx.2_5end | |||
|cluster_id=chr11:46615557..46615608,- | |||
|description=CAGE_peak_1_at_AMBRA1_5end | |||
|id=chr11:46615557..46615608,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006601;7.39e-07;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!6.51e-28!115;UBERON:0001049!1.08e-21!57;UBERON:0005068!1.08e-21!57;UBERON:0006241!1.08e-21!57;UBERON:0007135!1.08e-21!57;UBERON:0000073!2.17e-21!94;UBERON:0001016!2.17e-21!94;UBERON:0005743!3.05e-21!86;UBERON:0001017!8.35e-21!82;UBERON:0000955!2.84e-18!69;UBERON:0006238!2.84e-18!69;UBERON:0002616!1.89e-17!59;UBERON:0003075!8.94e-17!86;UBERON:0007284!8.94e-17!86;UBERON:0002346!1.04e-16!90;UBERON:0003080!6.32e-16!42;UBERON:0002780!2.08e-15!41;UBERON:0001890!2.08e-15!41;UBERON:0006240!2.08e-15!41;UBERON:0003056!5.12e-13!61;UBERON:0001893!8.62e-13!34;UBERON:0002791!2.49e-12!33;UBERON:0002020!2.83e-12!34;UBERON:0003528!2.83e-12!34;UBERON:0001869!5.98e-12!32;UBERON:0002619!2.56e-11!22;UBERON:0001950!7.72e-11!20;UBERON:0000153!8.69e-10!129;UBERON:0007811!8.69e-10!129;UBERON:0000924!1.28e-09!173;UBERON:0006601!1.28e-09!173;UBERON:0004121!1.83e-09!169;UBERON:0000956!2.62e-09!25;UBERON:0000203!2.62e-09!25;UBERON:0000033!2.00e-08!123;UBERON:0003076!5.16e-07!15;UBERON:0003057!5.16e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;1.47e-11;41!UBERON:0001890;1.47e-11;41!UBERON:0000073;2.51e-11;53!UBERON:0002616;2.51e-11;53!UBERON:0002619;2.86e-11;22!UBERON:0001893;6.76e-11;34!UBERON:0001869;7.56e-11;32!UBERON:0001950;8.47e-11;20!UBERON:0002791;1.05e-10;32!UBERON:0003528;2.01e-10;34!UBERON:0002020;2.01e-10;34!UBERON:0000956;2.74e-09;25!UBERON:0000203;2.74e-09;25!UBERON:0001017;4.35e-09;75!UBERON:0007023;1.05e-08;114!UBERON:0001016;1.15e-08;83!UBERON:0000955;1.79e-08;68!UBERON:0000922;8.54e-07;49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.02e-27,114;UBERON:0001049,3.71e-21,56;UBERON:0005068,3.71e-21,56;UBERON:0006241,3.71e-21,56;UBERON:0007135,3.71e-21,56;UBERON:0001016,1.98e-20,89;UBERON:0001017,2.65e-20,81;UBERON:0000073,5.35e-20,53;UBERON:0002616,5.35e-20,53;UBERON:0000955,8.89e-18,68;UBERON:0006238,8.89e-18,68;UBERON:0003075,2.31e-17,82;UBERON:0007284,2.31e-17,82;UBERON:0002346,2.91e-17,86;UBERON:0002780,2.08e-15,41;UBERON:0001890,2.08e-15,41;UBERON:0003080,2.08e-15,41;UBERON:0006240,2.08e-15,41;UBERON:0003056,4.16e-13,61;UBERON:0001893,8.62e-13,34;UBERON:0003528,2.83e-12,34;UBERON:0002020,2.83e-12,34;UBERON:0010371,3.76e-12,104;UBERON:0001869,5.98e-12,32;UBERON:0002791,9.36e-12,32;UBERON:0002619,2.56e-11,22;UBERON:0001950,7.72e-11,20;UBERON:0000956,2.62e-09,25;UBERON:0000203,2.62e-09,25;UBERON:0004121,2.93e-09,171;UBERON:0000924,2.93e-09,171;UBERON:0006601,2.93e-09,171;UBERON:0011216,4.30e-09,223;UBERON:0003076,5.16e-07,15;UBERON:0003057,5.16e-07,15 | |||
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| ||
|short_description=p1@AMBRA1 | |||
}} | }} |
Latest revision as of 03:18, 18 September 2015
Short description: | p1@AMBRA1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_AMBRA1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000528950, ENST00000534300, uc001ncv.2, uc001ncw.2, uc001ncx.2_5end |
EntrezGene: | AMBRA1 |
HGNC: | 25990 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 2.02e-27 | 114 |
neural tube | 3.71e-21 | 56 |
neural rod | 3.71e-21 | 56 |
future spinal cord | 3.71e-21 | 56 |
neural keel | 3.71e-21 | 56 |
nervous system | 1.98e-20 | 89 |
central nervous system | 2.65e-20 | 81 |
regional part of nervous system | 5.35e-20 | 53 |
regional part of brain | 5.35e-20 | 53 |
brain | 8.89e-18 | 68 |
future brain | 8.89e-18 | 68 |
neural plate | 2.31e-17 | 82 |
presumptive neural plate | 2.31e-17 | 82 |
neurectoderm | 2.91e-17 | 86 |
regional part of forebrain | 2.08e-15 | 41 |
forebrain | 2.08e-15 | 41 |
anterior neural tube | 2.08e-15 | 41 |
future forebrain | 2.08e-15 | 41 |
pre-chordal neural plate | 4.16e-13 | 61 |
telencephalon | 8.62e-13 | 34 |
brain grey matter | 2.83e-12 | 34 |
gray matter | 2.83e-12 | 34 |
ecto-epithelium | 3.76e-12 | 104 |
cerebral hemisphere | 5.98e-12 | 32 |
regional part of telencephalon | 9.36e-12 | 32 |
regional part of cerebral cortex | 2.56e-11 | 22 |
neocortex | 7.72e-11 | 20 |
cerebral cortex | 2.62e-09 | 25 |
pallium | 2.62e-09 | 25 |
ectoderm-derived structure | 2.93e-09 | 171 |
ectoderm | 2.93e-09 | 171 |
presumptive ectoderm | 2.93e-09 | 171 |
organ system subdivision | 4.30e-09 | 223 |
posterior neural tube | 5.16e-07 | 15 |
chordal neural plate | 5.16e-07 | 15 |