FFCP PHASE1:Hg19::chr4:57522513..57522548,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr4:57522513..57522548,- to FFCP PHASE1:Hg19::chr4:57522513..57522548,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=84525 | |EntrezGene=84525 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24961 | |HGNC=24961 | ||
|TSSclassifier=strong | |||
|UniProt=Q9BPY8 | |UniProt=Q9BPY8 | ||
|association_with_transcript=124bp_to_ENST00000381255_5end | |||
|cluster_id=chr4:57522513..57522548,- | |||
|description=CAGE_peak_4_at_HOPX_5end | |||
|id=chr4:57522513..57522548,- | |||
|ontology_enrichment_celltype=CL:0000838!2.17e-11!52;CL:0000542!6.54e-11!53;CL:0000051!6.54e-11!53;CL:0000791!2.22e-09!18;CL:0000789!2.22e-09!18;CL:0002420!2.22e-09!18;CL:0002419!2.22e-09!18;CL:0000790!2.22e-09!18;CL:0000625!2.99e-09!11;CL:0000236!2.96e-08!14;CL:0000084!2.74e-07!25;CL:0000827!2.74e-07!25 | |||
|ontology_enrichment_celltype_v019=CL:0000625;4.56e-13;11!CL:0000236;9.27e-12;13!CL:0000542;8.72e-10;53!CL:0000791;4.30e-09;18!CL:0000789;4.30e-09;18!CL:0002419;4.30e-09;18!CL:0000084;4.54e-08;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,6.76e-15,52;CL:0000542,2.01e-14,53;CL:0000051,2.01e-14,53;CL:0000625,4.13e-13,11;CL:0000236,2.68e-12,14;CL:0000791,4.14e-09,18;CL:0000789,4.14e-09,18;CL:0002420,4.14e-09,18;CL:0002419,4.14e-09,18;CL:0000790,4.14e-09,18;CL:0000988,2.16e-08,177;CL:0000084,4.45e-08,25;CL:0000827,4.45e-08,25;CL:0000037,2.58e-07,168;CL:0000738,3.97e-07,136;CL:0002087,5.57e-07,115 | |||
|ontology_enrichment_development_v019=CL:0000051;8.72e-10;53!CL:0000790;4.30e-09;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!6.88e-35!115;UBERON:0001049!6.29e-17!57;UBERON:0005068!6.29e-17!57;UBERON:0006241!6.29e-17!57;UBERON:0007135!6.29e-17!57;UBERON:0003075!9.88e-15!86;UBERON:0007284!9.88e-15!86;UBERON:0001017!5.78e-14!82;UBERON:0001893!1.20e-13!34;UBERON:0002780!1.73e-13!41;UBERON:0001890!1.73e-13!41;UBERON:0006240!1.73e-13!41;UBERON:0002020!2.24e-13!34;UBERON:0003528!2.24e-13!34;UBERON:0001869!2.27e-13!32;UBERON:0002346!3.83e-13!90;UBERON:0002791!5.31e-13!33;UBERON:0005743!5.42e-13!86;UBERON:0002616!5.67e-13!59;UBERON:0003080!7.41e-13!42;UBERON:0000178!1.82e-11!15;UBERON:0000179!1.82e-11!15;UBERON:0000463!1.82e-11!15;UBERON:0003056!1.82e-11!61;UBERON:0000073!1.01e-10!94;UBERON:0001016!1.01e-10!94;UBERON:0000955!1.11e-10!69;UBERON:0006238!1.11e-10!69;UBERON:0000956!1.23e-10!25;UBERON:0000203!1.23e-10!25;UBERON:0000153!5.04e-09!129;UBERON:0007811!5.04e-09!129;UBERON:0002619!6.35e-09!22;UBERON:0001950!4.17e-08!20;UBERON:0000033!1.20e-07!123 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;3.42e-16;15!UBERON:0000179;3.42e-16;15!UBERON:0000463;3.42e-16;15!UBERON:0002390;1.25e-12;32!UBERON:0001869;3.25e-10;32!UBERON:0000956;9.00e-10;25!UBERON:0000203;9.00e-10;25!UBERON:0002791;2.11e-09;32!UBERON:0001893;2.31e-09;34!UBERON:0003528;9.99e-09;34!UBERON:0002020;9.99e-09;34!UBERON:0002619;1.74e-07;22!UBERON:0002193;2.68e-07;42!UBERON:0001950;3.07e-07;20 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.63e-25,114;UBERON:0000178,1.94e-16,15;UBERON:0000179,1.94e-16,15;UBERON:0000463,1.94e-16,15;UBERON:0001017,5.82e-11,81;UBERON:0001869,7.11e-11,32;UBERON:0001049,1.89e-10,56;UBERON:0005068,1.89e-10,56;UBERON:0006241,1.89e-10,56;UBERON:0007135,1.89e-10,56;UBERON:0001893,6.81e-10,34;UBERON:0000073,1.07e-09,53;UBERON:0002616,1.07e-09,53;UBERON:0000956,1.20e-09,25;UBERON:0000203,1.20e-09,25;UBERON:0003528,1.27e-09,34;UBERON:0002020,1.27e-09,34;UBERON:0002791,1.39e-09,32;UBERON:0001016,7.93e-09,89;UBERON:0002780,9.93e-09,41;UBERON:0001890,9.93e-09,41;UBERON:0003080,9.93e-09,41;UBERON:0006240,9.93e-09,41;UBERON:0002619,2.00e-07,22;UBERON:0000955,3.40e-07,68;UBERON:0006238,3.40e-07,68;UBERON:0001950,3.66e-07,20 | |||
|phase1_expression=0,0,0.140954404095971,1.0007329835313,0.446961094427288,0,0,0,0,0.245733936501509,0,0,0,0.990130823680373,1.65698687863958,0,0,0,0,0.246242116153576,0.408001382488506,0.313454721478088,7.44213566540748,3.01123735160345,3.01302335027527,0,0,0,9.8341069212226,3.45446458287491,4.64448369948228,1.83884244895785,0,0,0,0,9.9824149373848,3.87796785972314,1.20326668482085,3.03815219002193,0,1.94336199611388,0.515151135268373,0,0,0,0,0,0,0,0,0.236482229888585,0,0,0,0,0.272906150057846,0,0.306083892370903,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.422510572623884,0,0,0,0,0,0,0,0,14.0796995569058,21.2994058392231,22.2377313465889,8.53460445133014,11.2110876370083,25.2891073579973,28.4249295297491,20.989182599778,2.84606484554724,11.1575065980478,5.73409842187843,38.3296852879175,19.6177997043538,6.847986204152,0.786839080455332,0.786021525498329,1.23360899399706,0,0,0,0,6.57321695622524,0.589211814949674,0.886135578334485,0.270803863765016,0.896639238079726,3.25148368899696,0.822189523018381,1.93445012450094,1.44901542867526,0.14828656316206,0,0,12.5773370394298,1.53288197440768,1.71813722741315,0.759059076058509,4.45991580053735,7.1619179924206,5.70271226669025,10.5402583354441,12.2867146708242,2.49861453104692,5.20909954496837,10.6746639599736,8.26587647221403,5.88368430723716,3.91025890483557,0,0,0.12786256184353,0.722878304769133,0,0.144846518960824,0,0,0.189069634328136,0.221729397462564,0.175669571386252,2.42311289670768,1.82147644146271,0.741568885568859,1.62273696827342,0.174129737299267,1.72845348674525,0.953962497221368,0,0.371457501329565,0,0,1.04142150482278,0.56530794192401,2.51699661725944,1.92582629358047,1.46296476575767,0,0,0,1.20848795132744,0,0,0,0,0.446498641420399,0.22452937262617,0,3.06633274931766,1.89853131913626,1.46561395144326,0,3.87780264148325,0.436094052142534,0,0,0,0,0,1.12135520028461,0,0,0,0,0.163461903113459,0,0,0,0,0,0.149448680551801,0.23486899728753,0,0,0,0.368502951935304,0,0,0,0,0,0.673344455816265,0.125118519871964,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0974370051611986,0,0,0,0,0.10075209822764,0,0,0,0,0,0,0.580969714347592,0,0.504641701751257,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,1.1240175325762,0,0.833296006426766,0,2.07986957055916,0,0.34779121492523,0.352226082707465,0.288732895522148,0,0,0,0,0,3.51006397708857,1.0404181360211,0,0,0.141775097242386,0,0,0,0,0,0,0,0.37872730027914,0,0,0,0,0,0,0,0.448524337381443,0.43596006883328,0.4400297149257,0,0,0.845302752556,0,0,1.80045161983499,1.41849132023278,2.39779961114489,0.428933980974443,0,0,0.325736184293735,0.355391948742546,0,0,0,0,2.43247561282381,0,0,0,0,0,0.434343920002738,1.2328579353023,0,0.224170287987055,22.4615066630197,10.3501235932568,11.8075593377368,10.6719742173435,3.90419561572865,7.73288812777695,7.03568314404265,3.82763250991898,0,0,0.414415513436035,1.10422342547226,1.00034104211935,0.271265023699736,0,0,0,0,2.40756879782175,70.4963262573553,0,0,0.184369168541703,0,0.391602314925481,0.686286847621712,3.72182447021197,3.8828556147351,2.98837161849644,1.21251028578504,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.114814448164607,0.364182336013434,0.262248829918848,0,0.0770153371044148,0,0,0,0,4.25234263191289,0,0,0.812839312631559,3.51182841698397,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0.193341436584244,0,0,0.413509717453592,0,0.145016693914229,0,0,0,0,0.255225424989168,0.2023155617111,0,0,0,0,0,0,0,0,0,0,0,1.02359116524534,0,0,0,0.359744915166629,0,0,0,0,0,0.48763373908959,0,0,0,0,0,0,0,0,0.578775534266688,0,0,0.92947049429925,0,0.143411352204052,0.392996164052485,0,0,0,0,0.75894634753143,0,0.769776901804097,0,0,0.282431402330337,0,0,0,0,7.61171413848254,2.29391162142713,5.12682468456746,1.90585420366231,2.87953591160336,9.07862635669804,6.48037724685738,4.75875105776562,0,0,0,0,0,0,0,3.79200805722352,78.9002124945351,41.2763486311572,0,22.4637742490767,0,0,0,17.7756366691683,0,0,0,0,0,0,0,0,0,0,0,6.99451132795422,0,0,0.146508179271894,0,0,0,0,0.296964680832639,0,9.94147647766298,0.984685914873589,0,0,0,0.597743964753209,4.42054264849836,0,0,0.123084805461069,0,0,0,0,3.64980600856654,4.7896618469388,0,8.72399471485697,5.28778159522552,0,0,0,0,0,0,0,0,0.291604613383254,0.173624994933292,0.885741385813839,0.964771509003264,0,0.442317039724898,1.47773809476774,9.87234287192876,0,0.557694977114413,2.30850775511391,0,0,0,0,0,0.183195186803725,0,0,2.19772358953035,0,0,0,0,0,0,0,0,0,0,0,0.530745387020035,0.611030144933625,23.4251691657691,56.3451561596053,59.7293551171205,0.943615861729479,0.802577647298789,0.468528891450678,0,0,0,2.76209081994573,3.62972148145992,0.30607276163049,1.0741718536843,0.300646838828985,0,0,0,0,0,0,0,0,0,0,5.41652671550293,0,0,0,0,1.74580229679155,0,0.677942222341597,0,0,8.48364665808775,0,0,7.25740182113799,0,0,0,0.343189995723929,0,0,0,0,0,0,0,2.40168115483916,0.136905378891993,0,0,9.72683210833464,0.279282401272254,0.458320848023367,0.717873024576814,0,0.429226048136571,0,0.268733889946905,0,0,0,0,0,0,0,4.77137813885582,0.681017030557878,0,0,0,0,0.77380195455795,8.201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| ||
|short_description=p4@HOPX | |||
}} | }} |
Latest revision as of 02:52, 18 September 2015
Short description: | p4@HOPX |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_HOPX_5end |
Coexpression cluster: | NA |
Association with transcript: | 124bp_to_ENST00000381255_5end |
EntrezGene: | HOPX |
HGNC: | 24961 |
UniProt: | Q9BPY8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 6.76e-15 | 52 |
lymphocyte | 2.01e-14 | 53 |
common lymphoid progenitor | 2.01e-14 | 53 |
CD8-positive, alpha-beta T cell | 4.13e-13 | 11 |
B cell | 2.68e-12 | 14 |
mature alpha-beta T cell | 4.14e-09 | 18 |
alpha-beta T cell | 4.14e-09 | 18 |
immature T cell | 4.14e-09 | 18 |
mature T cell | 4.14e-09 | 18 |
immature alpha-beta T cell | 4.14e-09 | 18 |
hematopoietic cell | 2.16e-08 | 177 |
T cell | 4.45e-08 | 25 |
pro-T cell | 4.45e-08 | 25 |
hematopoietic stem cell | 2.58e-07 | 168 |
leukocyte | 3.97e-07 | 136 |
nongranular leukocyte | 5.57e-07 | 115 |
Ontology term | p-value | n |
---|---|---|
adult organism | 2.63e-25 | 114 |
blood | 1.94e-16 | 15 |
haemolymphatic fluid | 1.94e-16 | 15 |
organism substance | 1.94e-16 | 15 |
central nervous system | 5.82e-11 | 81 |
cerebral hemisphere | 7.11e-11 | 32 |
neural tube | 1.89e-10 | 56 |
neural rod | 1.89e-10 | 56 |
future spinal cord | 1.89e-10 | 56 |
neural keel | 1.89e-10 | 56 |
telencephalon | 6.81e-10 | 34 |
regional part of nervous system | 1.07e-09 | 53 |
regional part of brain | 1.07e-09 | 53 |
cerebral cortex | 1.20e-09 | 25 |
pallium | 1.20e-09 | 25 |
brain grey matter | 1.27e-09 | 34 |
gray matter | 1.27e-09 | 34 |
regional part of telencephalon | 1.39e-09 | 32 |
nervous system | 7.93e-09 | 89 |
regional part of forebrain | 9.93e-09 | 41 |
forebrain | 9.93e-09 | 41 |
anterior neural tube | 9.93e-09 | 41 |
future forebrain | 9.93e-09 | 41 |
regional part of cerebral cortex | 2.00e-07 | 22 |
brain | 3.40e-07 | 68 |
future brain | 3.40e-07 | 68 |
neocortex | 3.66e-07 | 20 |