FFCP PHASE1:Hg19::chr15:52821299..52821362,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr15:52821299..52821362,-
|short_description=p2@MYO5A
|description=CAGE_peak_2_at_MYO5A_5end
|association_with_transcript=-52bp_to_ENST00000356338,ENST00000399...") |
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(11 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=4644 | |EntrezGene=4644 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7602 | |HGNC=7602 | ||
|TSSclassifier=strong | |||
|UniProt=Q9Y4I1,F8WE88,F5H363,Q9UES4,A8CDT9 | |UniProt=Q9Y4I1,F8WE88,F5H363,Q9UES4,A8CDT9 | ||
|association_with_transcript=-52bp_to_ENST00000356338,ENST00000399231,ENST00000399233,ENST00000546028,NM_000259,NM_001142495,uc002abx.3,uc002aby.2,uc010uge.1_5end | |||
|cluster_id=chr15:52821299..52821362,- | |||
|coexpression_cluster_id=C3 | |||
|description=CAGE_peak_2_at_MYO5A_5end | |||
|id=chr15:52821299..52821362,- | |||
|ontology_enrichment_celltype=CL:0000738!1.27e-14!140;CL:0002087!1.52e-11!119;CL:0002031!4.24e-10!124;CL:0000542!1.74e-07!53;CL:0000051!1.74e-07!53;CL:0000838!1.86e-07!52 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,1.13e-15,136;CL:0002087,1.55e-12,115;CL:0002031,5.25e-11,120;CL:0000542,1.74e-07,53;CL:0000051,1.74e-07,53;CL:0000838,1.86e-07,52;CL:0000766,9.05e-07,72 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!1.94e-24!57;UBERON:0005068!1.94e-24!57;UBERON:0006241!1.94e-24!57;UBERON:0007135!1.94e-24!57;UBERON:0001017!1.59e-22!82;UBERON:0002780!1.28e-21!41;UBERON:0001890!1.28e-21!41;UBERON:0006240!1.28e-21!41;UBERON:0002616!2.46e-21!59;UBERON:0003080!2.69e-21!42;UBERON:0005743!4.36e-21!86;UBERON:0000955!6.15e-20!69;UBERON:0006238!6.15e-20!69;UBERON:0000073!1.74e-18!94;UBERON:0001016!1.74e-18!94;UBERON:0001893!3.76e-18!34;UBERON:0002020!4.33e-18!34;UBERON:0003528!4.33e-18!34;UBERON:0002791!1.78e-17!33;UBERON:0001869!3.94e-17!32;UBERON:0000033!7.32e-15!123;UBERON:0000153!9.48e-15!129;UBERON:0007811!9.48e-15!129;UBERON:0002619!1.01e-14!22;UBERON:0003075!5.42e-14!86;UBERON:0007284!5.42e-14!86;UBERON:0001950!1.41e-13!20;UBERON:0000956!1.71e-13!25;UBERON:0000203!1.71e-13!25;UBERON:0004121!2.82e-13!169;UBERON:0002346!8.64e-13!90;UBERON:0000924!1.55e-12!173;UBERON:0006601!1.55e-12!173;UBERON:0003056!2.38e-12!61;UBERON:0007023!4.29e-11!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;1.25e-15;41!UBERON:0001890;1.25e-15;41!UBERON:0001893;1.40e-15;34!UBERON:0003528;2.75e-15;34!UBERON:0002020;2.75e-15;34!UBERON:0001869;2.82e-15;32!UBERON:0002791;3.88e-15;32!UBERON:0002619;9.81e-15;22!UBERON:0000073;8.33e-14;53!UBERON:0002616;8.33e-14;53!UBERON:0001950;1.41e-13;20!UBERON:0000956;2.42e-13;25!UBERON:0000203;2.42e-13;25!UBERON:0001017;2.91e-10;75!UBERON:0000955;1.88e-09;68!UBERON:0001016;4.38e-08;83 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,1.05e-24,56;UBERON:0005068,1.05e-24,56;UBERON:0006241,1.05e-24,56;UBERON:0007135,1.05e-24,56;UBERON:0000073,2.26e-23,53;UBERON:0002616,2.26e-23,53;UBERON:0001017,1.15e-22,81;UBERON:0002780,1.27e-21,41;UBERON:0001890,1.27e-21,41;UBERON:0003080,1.27e-21,41;UBERON:0006240,1.27e-21,41;UBERON:0000955,4.34e-20,68;UBERON:0006238,4.34e-20,68;UBERON:0001016,9.11e-20,89;UBERON:0001893,3.73e-18,34;UBERON:0003528,4.29e-18,34;UBERON:0002020,4.29e-18,34;UBERON:0001869,3.91e-17,32;UBERON:0002791,5.84e-17,32;UBERON:0010371,3.33e-16,104;UBERON:0003075,7.25e-15,82;UBERON:0007284,7.25e-15,82;UBERON:0002619,1.01e-14,22;UBERON:0001950,1.41e-13,20;UBERON:0002346,1.45e-13,86;UBERON:0000956,1.70e-13,25;UBERON:0000203,1.70e-13,25;UBERON:0004121,5.29e-13,171;UBERON:0000924,5.29e-13,171;UBERON:0006601,5.29e-13,171;UBERON:0003056,7.92e-13,61;UBERON:0010314,6.55e-11,132;UBERON:0007023,1.17e-10,114 | |||
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| ||
|short_description=p2@MYO5A | |||
}} | }} |
Latest revision as of 02:49, 18 September 2015
Short description: | p2@MYO5A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_MYO5A_5end |
Coexpression cluster: | C3_occipital_temporal_insula_medial_postcentral_frontal_amygdala |
Association with transcript: | -52bp_to_ENST00000356338, ENST00000399231, ENST00000399233, ENST00000546028, NM_000259, NM_001142495, uc002abx.3, uc002aby.2, uc010uge.1_5end |
EntrezGene: | MYO5A |
HGNC: | 7602 |
UniProt: | Q9Y4I1F8WE88F5H363Q9UES4A8CDT9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 1.13e-15 | 136 |
nongranular leukocyte | 1.55e-12 | 115 |
hematopoietic lineage restricted progenitor cell | 5.25e-11 | 120 |
lymphocyte | 1.74e-07 | 53 |
common lymphoid progenitor | 1.74e-07 | 53 |
lymphoid lineage restricted progenitor cell | 1.86e-07 | 52 |
myeloid leukocyte | 9.05e-07 | 72 |
Ontology term | p-value | n |
---|---|---|
neural tube | 1.05e-24 | 56 |
neural rod | 1.05e-24 | 56 |
future spinal cord | 1.05e-24 | 56 |
neural keel | 1.05e-24 | 56 |
regional part of nervous system | 2.26e-23 | 53 |
regional part of brain | 2.26e-23 | 53 |
central nervous system | 1.15e-22 | 81 |
regional part of forebrain | 1.27e-21 | 41 |
forebrain | 1.27e-21 | 41 |
anterior neural tube | 1.27e-21 | 41 |
future forebrain | 1.27e-21 | 41 |
brain | 4.34e-20 | 68 |
future brain | 4.34e-20 | 68 |
nervous system | 9.11e-20 | 89 |
telencephalon | 3.73e-18 | 34 |
brain grey matter | 4.29e-18 | 34 |
gray matter | 4.29e-18 | 34 |
cerebral hemisphere | 3.91e-17 | 32 |
regional part of telencephalon | 5.84e-17 | 32 |
ecto-epithelium | 3.33e-16 | 104 |
neural plate | 7.25e-15 | 82 |
presumptive neural plate | 7.25e-15 | 82 |
regional part of cerebral cortex | 1.01e-14 | 22 |
neocortex | 1.41e-13 | 20 |
neurectoderm | 1.45e-13 | 86 |
cerebral cortex | 1.70e-13 | 25 |
pallium | 1.70e-13 | 25 |
ectoderm-derived structure | 5.29e-13 | 171 |
ectoderm | 5.29e-13 | 171 |
presumptive ectoderm | 5.29e-13 | 171 |
pre-chordal neural plate | 7.92e-13 | 61 |
structure with developmental contribution from neural crest | 6.55e-11 | 132 |
adult organism | 1.17e-10 | 114 |