FFCP PHASE1:Hg19::chr5:52284911..52284931,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr5:52284911..52284931,+ to FFCP PHASE1:Hg19::chr5:52284911..52284931,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3673 | |EntrezGene=3673 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6137 | |HGNC=6137 | ||
|TSSclassifier=strong | |||
|UniProt=P17301 | |UniProt=P17301 | ||
|association_with_transcript=-224bp_to_ENST00000296585,NM_002203,uc003joy.2,uc011cqa.1,uc011cqb.1,uc011cqc.1,uc011cqd.1,uc011cqe.1_5end | |||
|cluster_id=chr5:52284911..52284931,+ | |||
|description=CAGE_peak_5_at_ITGA2_5end | |||
|id=chr5:52284911..52284931,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002379;3.11e-11;1!CL:0002539;1.40e-09;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0002379,3.63e-11,1;CL:0002539,1.14e-09,10 | |||
|ontology_enrichment_development_v019=UBERON:0005425;8.61e-12;1!UBERON:0006222;3.11e-11;1 | |||
|ontology_enrichment_disease=DOID:2394!1.22e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:3620;3.11e-11;1!DOID:3565;3.11e-11;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3620,3.63e-11,1;DOID:3565,3.63e-11,1 | |||
|ontology_enrichment_uberon=UBERON:0004111!9.96e-16!241;UBERON:0000477!2.42e-12!286;UBERON:0000025!6.72e-11!194;UBERON:0001049!1.53e-10!57;UBERON:0005068!1.53e-10!57;UBERON:0006241!1.53e-10!57;UBERON:0007135!1.53e-10!57;UBERON:0000483!4.06e-09!309;UBERON:0000467!6.78e-09!625;UBERON:0000055!7.60e-09!69;UBERON:0001017!7.60e-09!82;UBERON:0000480!8.21e-09!626;UBERON:0000119!8.45e-09!312;UBERON:0000475!1.19e-08!365;UBERON:0005743!1.56e-08!86;UBERON:0004872!1.93e-08!84;UBERON:0007023!3.36e-08!115;UBERON:0002616!3.71e-08!59;UBERON:0000955!6.27e-08!69;UBERON:0006238!6.27e-08!69;UBERON:0000468!7.28e-08!659;UBERON:0000033!8.02e-08!123;UBERON:0002020!8.36e-08!34;UBERON:0003528!8.36e-08!34;UBERON:0001893!9.71e-08!34;UBERON:0003075!1.12e-07!86;UBERON:0007284!1.12e-07!86;UBERON:0002298!1.28e-07!8;UBERON:0000073!1.73e-07!94;UBERON:0001016!1.73e-07!94;UBERON:0002791!2.61e-07!33;UBERON:0002780!2.78e-07!41;UBERON:0001890!2.78e-07!41;UBERON:0006240!2.78e-07!41;UBERON:0002049!3.91e-07!79;UBERON:0007798!3.91e-07!79;UBERON:0004121!4.16e-07!169;UBERON:0003080!5.66e-07!42;UBERON:0002346!6.50e-07!90;UBERON:0000153!6.61e-07!129;UBERON:0007811!6.61e-07!129 | |||
|ontology_enrichment_uberon_v019=UBERON:0005162;9.61e-22;2!UBERON:0000122;9.61e-22;2!UBERON:0000941;8.61e-12;1!UBERON:0001785;8.61e-12;1!UBERON:0002464;8.61e-12;1!UBERON:0004904;8.61e-12;1!UBERON:0001021;8.61e-12;1!UBERON:0002336;1.01e-11;1!UBERON:0011215;1.01e-11;1!UBERON:0001018;1.01e-11;1!UBERON:0002473;1.01e-11;1!UBERON:0005340;1.01e-11;1!UBERON:0003544;1.01e-11;1!UBERON:0005970;1.01e-11;1!UBERON:0002316;1.01e-11;1!UBERON:0001020;1.01e-11;1!UBERON:0002437;1.01e-11;1!UBERON:0004237;1.40e-09;10!UBERON:0004695;1.40e-09;10!UBERON:0002111;1.40e-09;10!UBERON:0004178;1.40e-09;10!UBERON:0000947;7.00e-08;21!UBERON:0010191;7.00e-08;21!UBERON:0004573;1.96e-07;33!UBERON:0004571;1.96e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005162,1.01e-21,2;UBERON:0000122,1.01e-21,2;UBERON:0000941,8.62e-12,1;UBERON:0001785,8.62e-12,1;UBERON:0002464,8.62e-12,1;UBERON:0004904,8.62e-12,1;UBERON:0001021,8.62e-12,1;UBERON:0003902,8.62e-12,1;UBERON:0005425,8.62e-12,1;UBERON:0002336,1.06e-11,1;UBERON:0011215,1.06e-11,1;UBERON:0001018,1.06e-11,1;UBERON:0002473,1.06e-11,1;UBERON:0005340,1.06e-11,1;UBERON:0003544,1.06e-11,1;UBERON:0005970,1.06e-11,1;UBERON:0002316,1.06e-11,1;UBERON:0001020,1.06e-11,1;UBERON:0002437,1.06e-11,1;UBERON:0004237,1.14e-09,10;UBERON:0004695,1.14e-09,10;UBERON:0002111,1.14e-09,10;UBERON:0004178,1.14e-09,10;UBERON:0000947,6.17e-08,21;UBERON:0010191,6.17e-08,21;UBERON:0004573,1.49e-07,33;UBERON:0004571,1.49e-07,33 | |||
|phase1_expression=0.181678379270557,0,0.140954404095971,0,0,0,0,0.631719873426831,0,0.491467873003018,0,0,0,0,0,0,0,1.46062018077475,0,0,0,0,0.286235987131057,0,0.376627918784408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320929027076094,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0.144846518960824,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198762407366705,0,0,0,0,0.275118041940067,0.208994966536811,0.516833518338658,0.35576626268671,0.33472061276467,0.402829317109147,0,0,0.367663080345869,0,0.0892997282840798,0.22452937262617,0.112611480483322,0,0,0.366403487860815,0,0,0,0,0.506522046658319,0.926864265692532,2.29469296599051,0.709336764396714,0,0,0.49333509683432,0,0,0.326923806226917,0.151357427644931,0,0,0,1.1409436430889,0.448346041655403,0,0.161872944368132,0,0,0,0,0,0.247266929278557,0,0,0.168336113954066,0,0,0,0,0.150238058906597,0.113432183160021,0.358779271377724,0,0.423863802319124,0.300091096084402,0,0,0,1.5189869901714,0.0974370051611986,1.00973509697646,0,0,0,0.201504196455281,0.169560592310488,0.386521706326594,0.272746120590835,0.286804595389004,0,0,0,0,0,0.36497735907583,0,0,0,0,0,0,0,0,0.110293972732394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109750285408626,0,0.301586917234893,0,0,0,0,0.115930404975077,0.117408694235822,0.144366447761074,0.462985512576611,0.190254152234598,0,0,0,0,0,0,0.16798212819886,0.283550194484773,0,0.290633938513962,0.383382679165211,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0,0,0,0.387815147273333,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0.301439377059586,0,0.399891964728228,0,0,0,0,0,0,0,0,0.179060963239896,0,0,0,0,0.254094624222463,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0.234282829985426,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.306923946576125,0,0,0,0.482561763430822,0,0.154209693802656,0,0.164254312027618,0.519254429183621,0.116210378459959,0,0.200506470303285,0.0920809889358963,0,0,0,0,0.231046011313244,0,0,0,0,0,0,0,0,0,0,0,0,0.219259876645935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0.165284915360978,0.576570202095319,1.02090169995667,0,0,2.20368642781448,0.6970372701606,0,0,1.73986598415015,0.55597265731176,0.143124886741991,0,0,0,0.255897791311334,0,0.636406495851874,0,0,0,0,0.404364963146632,0,0,0,0.487426979262569,0,0,0.141405431953713,0,1.65409603063837,0,0,0,0,0,0,0,0,0.0982490410131212,0,0,0,0,0,0,0.192444225451024,0,0,0.0941438007767792,0,0,0.886860307073351,3.44585100310439,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.50634477090067,0,0,0,0,0,0,0,0.166849141711909,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307160702099232,0,0,0,0,0,0,0,0,0.613612095012929,0,0.311039587661807,0.0898683511473268,0,0,0,0,0,0.969332746095218,1.29875337426592,0,0,0,0,0,0,0,0,0,0,0,0.241192877250816,0,0,0,0,0,0.139423744278603,0.0769502585037971,0,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0.216388639742091,0,0,0,0,0,0,3.2352543830725,0,1.1713222286267,0,0,0,0,0,0,0.126373159256976,0,0,0,0.330991955875499,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.443175571691151,0,0.0801588202515337,0,0,0,0,0,0,0.248505071130865,0,0,0,0,0,0.600420288709789,0.410716136675979,0,0.429765441419957,0,0,0,0.717873024576814,0,0,0,0.134366944973453,0.360299883542404,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0.303747783290123,0.335434687599266,0.0788057072991982,0.157363764404994,0.105600336519406,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0.113312091520126,0,0,0.775697738169303,0.26446520348538,0,0,0,0.314408610199332,0,0,0,0,0,0,0,0,0,0,0,0,0.1251909307065,0.573409195690071,0.665574309221114,0.807253238237985,0,0,0,0,1.17632909849086,0,0,0,0,0,0.189403005275089,0,0,0.228840068396924,0.151230923763239,0.466311601748341,1.03498604992744,0.318593534327405,0.449803112163605,0.155262956876259,0,0.265841714557995,0,0.300515217994437,0.761610424337591,0.406870733204662,0.181848659202559,0.107410557042488,1.85613503951397,0.398095888698616,0,0,0.336749488765919,0,0,0.214441591374926,0,0,0,0,0.179088841081487,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.834979926253974,0,0.159633859057151,0.82046545696302,0,0.207471757392654,0.322951291263702,4.28308260777463,0.0981477185010256,0,0,0.462102664601353,0,0,0,0.0752103283492573,0,0,0,0,0.443568258651136,0.135075169236789,0,0,0.824405532520789,0,0,0.496211178389294,0,0.383287282918786,0,0,0,0,0.177404740325278,0,0,1.35939465953663,0.460409414939944,0,0.333694205676207,0.078493092850514,0,0,0,0,0,0.142953088353313,0,0,0,0,0,0.17071847709395,0,0,0,0,0.423387050190929,0.22910686854405,0,0,0,0,0,0,0,0,0.485710993059139,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0.297046400327086,0.4226557275834,0,0.0939839179798536,0.257831551894309,0,0,1.41157948686277,0.0802413666891683,0,0.458729283404541,0.573358332605805,0,0.407948941145488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.310298987585686,0,0,0,0,0,0,0,0,0.342233301085281,0,0.0717222053926763,0,0.325613074443898,0,0,0,0,0.122241444182866,0,0,0,0 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| ||
|short_description=p5@ITGA2 | |||
}} | }} |
Latest revision as of 02:30, 18 September 2015
Short description: | p5@ITGA2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_ITGA2_5end |
Coexpression cluster: | NA |
Association with transcript: | -224bp_to_ENST00000296585, NM_002203, uc003joy.2, uc011cqa.1, uc011cqb.1, uc011cqc.1, uc011cqd.1, uc011cqe.1_5end |
EntrezGene: | ITGA2 |
HGNC: | 6137 |
UniProt: | P17301 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
meningothelial cell | 3.63e-11 | 1 |
aortic smooth muscle cell | 1.14e-09 | 10 |
Ontology term | p-value | n |
---|---|---|
multi cell component structure | 1.01e-21 | 2 |
neuron projection bundle | 1.01e-21 | 2 |
cranial nerve II | 8.62e-12 | 1 |
cranial nerve | 8.62e-12 | 1 |
nerve trunk | 8.62e-12 | 1 |
nerve connecting eye with brain | 8.62e-12 | 1 |
nerve | 8.62e-12 | 1 |
retinal neural layer | 8.62e-12 | 1 |
presumptive neural retina | 8.62e-12 | 1 |
corpus callosum | 1.06e-11 | 1 |
central nervous system cell part cluster | 1.06e-11 | 1 |
axon tract | 1.06e-11 | 1 |
intercerebral commissure | 1.06e-11 | 1 |
dorsal telencephalic commissure | 1.06e-11 | 1 |
brain white matter | 1.06e-11 | 1 |
brain commissure | 1.06e-11 | 1 |
white matter | 1.06e-11 | 1 |
nervous system commissure | 1.06e-11 | 1 |
cerebral hemisphere white matter | 1.06e-11 | 1 |
blood vessel smooth muscle | 1.14e-09 | 10 |
arterial system smooth muscle | 1.14e-09 | 10 |
artery smooth muscle tissue | 1.14e-09 | 10 |
aorta smooth muscle tissue | 1.14e-09 | 10 |
aorta | 6.17e-08 | 21 |
aortic system | 6.17e-08 | 21 |
systemic artery | 1.49e-07 | 33 |
systemic arterial system | 1.49e-07 | 33 |
Ontology term | p-value | n |
---|---|---|
central nervous system cancer | 3.63e-11 | 1 |
meningioma | 3.63e-11 | 1 |