FFCP PHASE1:Hg19::chr6:32160607..32160614,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=63940 | |EntrezGene=63940 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=13945 | |HGNC=13945 | ||
|TSSclassifier=strong | |||
|UniProt=E9PIP3 | |UniProt=E9PIP3 | ||
|association_with_transcript=30bp_to_ENST00000487761_5end | |association_with_transcript=30bp_to_ENST00000487761_5end | ||
|cluster_id=chr6:32160607..32160614,- | |||
|coexpression_cluster_id=C18 | |coexpression_cluster_id=C18 | ||
|description=CAGE_peak_6_at_GPSM3_5end | |description=CAGE_peak_6_at_GPSM3_5end | ||
|id=chr6:32160607..32160614,- | |id=chr6:32160607..32160614,- | ||
|ontology_enrichment_celltype=CL:0000037!1.81e-38!172;CL:0000566!1.81e-38!172;CL:0000988!7.28e-35!182;CL:0000738!2.45e-34!140;CL:0002032!1.87e-33!165;CL:0000837!1.87e-33!165;CL:0002087!1.61e-31!119;CL:0002031!1.13e-26!124;CL:0000084!3.65e-26!25;CL:0000827!3.65e-26!25;CL:0000542!3.10e-23!53;CL:0000051!3.10e-23!53;CL:0000838!1.80e-22!52;CL:0000791!5.22e-22!18;CL:0000789!5.22e-22!18;CL:0002420!5.22e-22!18;CL:0002419!5.22e-22!18;CL:0000790!5.22e-22!18;CL:0000625!1.86e-13!11;CL:0000763!1.07e-12!112;CL:0000049!1.07e-12!112;CL:0000766!5.52e-11!76;CL:0002057!3.04e-10!42;CL:0000624!1.43e-09!6;CL:0000860!3.83e-09!45;CL:0000557!9.42e-09!71;CL:0002194!3.38e-08!63;CL:0000576!3.38e-08!63;CL:0000040!3.38e-08!63;CL:0000559!3.38e-08!63;CL:0000839!4.18e-08!70;CL:0000134!5.05e-08!358;CL:0002009!9.84e-08!65;CL:0002320!1.82e-07!365 | |ontology_enrichment_celltype=CL:0000037!1.81e-38!172;CL:0000566!1.81e-38!172;CL:0000988!7.28e-35!182;CL:0000738!2.45e-34!140;CL:0002032!1.87e-33!165;CL:0000837!1.87e-33!165;CL:0002087!1.61e-31!119;CL:0002031!1.13e-26!124;CL:0000084!3.65e-26!25;CL:0000827!3.65e-26!25;CL:0000542!3.10e-23!53;CL:0000051!3.10e-23!53;CL:0000838!1.80e-22!52;CL:0000791!5.22e-22!18;CL:0000789!5.22e-22!18;CL:0002420!5.22e-22!18;CL:0002419!5.22e-22!18;CL:0000790!5.22e-22!18;CL:0000625!1.86e-13!11;CL:0000763!1.07e-12!112;CL:0000049!1.07e-12!112;CL:0000766!5.52e-11!76;CL:0002057!3.04e-10!42;CL:0000624!1.43e-09!6;CL:0000860!3.83e-09!45;CL:0000557!9.42e-09!71;CL:0002194!3.38e-08!63;CL:0000576!3.38e-08!63;CL:0000040!3.38e-08!63;CL:0000559!3.38e-08!63;CL:0000839!4.18e-08!70;CL:0000134!5.05e-08!358;CL:0002009!9.84e-08!65;CL:0002320!1.82e-07!365 | ||
|ontology_enrichment_celltype_v019=CL:0000791;3.06e-38;18!CL:0000789;3.06e-38;18!CL:0002419;3.06e-38;18!CL:0000084;1.57e-31;25!CL:0000625;4.19e-22;11!CL:0000624;8.34e-21;6!CL:0000898;6.27e-16;3!CL:0000226;2.21e-15;3!CL:0000842;2.21e-15;3!CL:0000815;2.20e-11;2!CL:0000792;2.20e-11;2!CL:0002677;2.20e-11;2!CL:0000542;3.15e-08;53!CL:0000775;9.69e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.39e-38,18;CL:0000789,1.39e-38,18;CL:0002420,1.39e-38,18;CL:0002419,1.39e-38,18;CL:0000790,1.39e-38,18;CL:0000084,1.13e-31,25;CL:0000827,1.13e-31,25;CL:0000625,3.17e-22,11;CL:0000624,4.49e-21,6;CL:0000898,2.92e-16,3;CL:0000226,4.46e-15,3;CL:0000842,4.46e-15,3;CL:0000838,8.47e-14,52;CL:0000542,1.74e-13,53;CL:0000051,1.74e-13,53;CL:0000815,1.89e-11,2;CL:0000792,1.89e-11,2;CL:0002677,1.89e-11,2;CL:0000738,3.25e-10,136;CL:0002087,4.87e-10,115;CL:0000037,1.95e-08,168;CL:0000988,8.71e-08,177;CL:0000775,9.55e-08,3 | |||
|ontology_enrichment_development_v019=CL:0000790;3.06e-38;18!CL:0000051;3.15e-08;53 | |||
|ontology_enrichment_disease=DOID:2531!2.15e-07!51;DOID:0060083!2.15e-07!51 | |ontology_enrichment_disease=DOID:2531!2.15e-07!51;DOID:0060083!2.15e-07!51 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.04e-17!102;UBERON:0003061!1.04e-17!102;UBERON:0002193!1.41e-17!112;UBERON:0000178!4.03e-11!15;UBERON:0000179!4.03e-11!15;UBERON:0000463!4.03e-11!15;UBERON:0002405!1.96e-08!115;UBERON:0002371!1.45e-07!80;UBERON:0002384!1.73e-07!375 | |ontology_enrichment_uberon=UBERON:0002390!1.04e-17!102;UBERON:0003061!1.04e-17!102;UBERON:0002193!1.41e-17!112;UBERON:0000178!4.03e-11!15;UBERON:0000179!4.03e-11!15;UBERON:0000463!4.03e-11!15;UBERON:0002405!1.96e-08!115;UBERON:0002371!1.45e-07!80;UBERON:0002384!1.73e-07!375 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;9.60e-32;15!UBERON:0000179;9.60e-32;15!UBERON:0000463;9.60e-32;15!UBERON:0002390;7.31e-20;32!UBERON:0002193;2.86e-11;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,1.09e-31,15;UBERON:0000179,1.09e-31,15;UBERON:0000463,1.09e-31,15;UBERON:0002390,3.48e-08,98;UBERON:0003061,3.48e-08,98;UBERON:0002193,3.71e-07,108 | |||
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|short_description=p6@GPSM3 | |short_description=p6@GPSM3 | ||
}} | }} |
Latest revision as of 02:24, 18 September 2015
Short description: | p6@GPSM3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_GPSM3_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | 30bp_to_ENST00000487761_5end |
EntrezGene: | GPSM3 |
HGNC: | 13945 |
UniProt: | E9PIP3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 1.39e-38 | 18 |
alpha-beta T cell | 1.39e-38 | 18 |
immature T cell | 1.39e-38 | 18 |
mature T cell | 1.39e-38 | 18 |
immature alpha-beta T cell | 1.39e-38 | 18 |
T cell | 1.13e-31 | 25 |
pro-T cell | 1.13e-31 | 25 |
CD8-positive, alpha-beta T cell | 3.17e-22 | 11 |
CD4-positive, alpha-beta T cell | 4.49e-21 | 6 |
naive T cell | 2.92e-16 | 3 |
single nucleate cell | 4.46e-15 | 3 |
mononuclear cell | 4.46e-15 | 3 |
lymphoid lineage restricted progenitor cell | 8.47e-14 | 52 |
lymphocyte | 1.74e-13 | 53 |
common lymphoid progenitor | 1.74e-13 | 53 |
regulatory T cell | 1.89e-11 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 1.89e-11 | 2 |
naive regulatory T cell | 1.89e-11 | 2 |
leukocyte | 3.25e-10 | 136 |
nongranular leukocyte | 4.87e-10 | 115 |
hematopoietic stem cell | 1.95e-08 | 168 |
hematopoietic cell | 8.71e-08 | 177 |
neutrophil | 9.55e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
blood | 1.09e-31 | 15 |
haemolymphatic fluid | 1.09e-31 | 15 |
organism substance | 1.09e-31 | 15 |
hematopoietic system | 3.48e-08 | 98 |
blood island | 3.48e-08 | 98 |
hemolymphoid system | 3.71e-07 | 108 |