FFCP PHASE1:Hg19::chr5:52084023..52084051,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr5:52084023..52084051,+
|short_description=p2@ITGA1
|description=CAGE_peak_2_at_ITGA1_5end
|association_with_transcript=-84bp_to_NM_181501_5end
|EntrezGene=3...") |
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(13 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3672 | |EntrezGene=3672 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6134 | |HGNC=6134 | ||
|TSSclassifier=strong | |||
|UniProt=P56199 | |UniProt=P56199 | ||
|association_with_transcript=-84bp_to_NM_181501_5end | |||
|cluster_id=chr5:52084023..52084051,+ | |||
|coexpression_cluster_id=C1277 | |||
|description=CAGE_peak_2_at_ITGA1_5end | |||
|id=chr5:52084023..52084051,+ | |||
|ontology_enrichment_celltype=CL:0000055!3.79e-10!180;CL:0000057!3.19e-08!75;CL:0000136!4.95e-08!15;CL:0000192!2.29e-07!42;CL:0000514!2.29e-07!42;CL:0000680!2.33e-07!57;CL:0000056!2.33e-07!57;CL:0000355!2.33e-07!57;CL:0000187!4.50e-07!54 | |||
|ontology_enrichment_celltype_v019=CL:0000136;1.37e-08;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000136,9.81e-09,15;CL:0000192,1.42e-08,43;CL:0000514,1.42e-08,43;CL:0000057,7.70e-08,76;CL:0000680,4.48e-07,58;CL:0000056,4.48e-07,58;CL:0000355,4.48e-07,58;CL:0000187,6.29e-07,55 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000481!1.91e-16!347;UBERON:0000468!3.06e-15!659;UBERON:0000477!2.87e-14!286;UBERON:0000475!1.26e-12!365;UBERON:0007023!6.83e-12!115;UBERON:0000467!8.05e-12!625;UBERON:0000480!1.37e-11!626;UBERON:0005256!1.59e-11!143;UBERON:0003104!1.02e-10!238;UBERON:0009142!1.02e-10!238;UBERON:0002100!1.70e-09!216;UBERON:0002385!2.99e-09!63;UBERON:0001015!2.99e-09!63;UBERON:0000383!2.99e-09!63;UBERON:0001134!1.75e-08!61;UBERON:0002036!1.75e-08!61;UBERON:0003082!1.75e-08!61;UBERON:0004111!1.96e-08!241;UBERON:0000062!2.09e-08!511;UBERON:0000490!2.96e-08!138;UBERON:0000119!4.24e-08!312;UBERON:0000483!7.37e-08!309;UBERON:0004290!7.64e-08!70;UBERON:0000914!7.89e-08!83;UBERON:0002329!7.89e-08!83;UBERON:0003077!7.89e-08!83;UBERON:0003059!7.89e-08!83;UBERON:0007282!7.89e-08!83;UBERON:0009618!7.89e-08!83;UBERON:0007285!7.89e-08!83;UBERON:0002107!8.78e-08!19;UBERON:0006925!8.78e-08!19;UBERON:0008836!8.78e-08!19;UBERON:0001048!1.08e-07!168;UBERON:0009854!1.32e-07!23;UBERON:0009856!1.70e-07!26;UBERON:0003914!2.84e-07!118;UBERON:0002050!3.37e-07!605;UBERON:0005423!3.37e-07!605;UBERON:0008835!3.94e-07!22;UBERON:0003894!3.94e-07!22;UBERON:0001007!4.19e-07!155;UBERON:0001555!4.19e-07!155;UBERON:0007026!4.19e-07!155;UBERON:0007499!4.92e-07!25;UBERON:0000923!5.32e-07!604;UBERON:0005291!5.32e-07!604;UBERON:0006598!5.32e-07!604;UBERON:0002532!5.32e-07!604;UBERON:0000922!7.37e-07!612;UBERON:0002368!7.92e-07!35 | |||
|ontology_enrichment_uberon_v019=UBERON:0002107;3.25e-09;19!UBERON:0006925;3.25e-09;19!UBERON:0002368;3.40e-08;33!UBERON:0002423;5.01e-07;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005256,1.04e-12,122;UBERON:0003104,2.80e-12,160;UBERON:0009142,2.80e-12,160;UBERON:0001048,1.42e-10,160;UBERON:0000490,5.55e-10,148;UBERON:0002100,5.79e-10,199;UBERON:0001007,5.94e-10,145;UBERON:0001555,5.94e-10,145;UBERON:0007026,5.94e-10,145;UBERON:0004921,1.18e-09,118;UBERON:0002107,2.08e-09,19;UBERON:0006925,2.08e-09,19;UBERON:0008836,2.08e-09,19;UBERON:0002385,3.38e-09,64;UBERON:0001015,3.38e-09,64;UBERON:0000383,3.38e-09,64;UBERON:0009856,1.55e-08,26;UBERON:0009854,2.12e-08,23;UBERON:0001134,2.45e-08,62;UBERON:0002036,2.45e-08,62;UBERON:0003082,2.45e-08,62;UBERON:0003914,2.92e-08,117;UBERON:0004119,3.66e-08,160;UBERON:0000925,3.66e-08,160;UBERON:0006595,3.66e-08,160;UBERON:0007524,3.93e-08,73;UBERON:0002368,4.96e-08,35;UBERON:0007499,5.56e-08,25;UBERON:0003077,7.06e-08,72;UBERON:0007285,7.06e-08,72;UBERON:0008835,7.84e-08,22;UBERON:0003894,7.84e-08,22;UBERON:0002329,8.40e-08,71;UBERON:0003059,8.40e-08,71;UBERON:0007282,8.40e-08,71;UBERON:0004290,8.40e-08,71;UBERON:0009618,8.40e-08,71;UBERON:0007023,9.36e-08,114;UBERON:0004872,3.01e-07,83;UBERON:0009497,3.89e-07,25;UBERON:0000015,3.89e-07,25;UBERON:0002423,3.89e-07,25;UBERON:0006235,3.89e-07,25;UBERON:0004161,3.89e-07,25;UBERON:0003929,4.47e-07,54 | |||
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|phase1_expression=34.5188920614058,22.4805550085532,24.667020716795,56.041047077753,50.0596425758562,8.72338524100369,53.1929744153452,1.89515962028049,0.783556884599516,2.21160542851358,0.697801167972428,0.218441372130172,0,0.37129905888014,0.331397375727916,2.6893005858071,3.01347264011988,2.19093027116212,4.39139518911456,0.246242116153576,0,0.313454721478088,2.0036519099174,0.410623275218653,2.76193807108566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.145398238779565,0.377875943688809,0.242584061187816,0,0,0,0.28769239232215,0,0.47296445977717,0,0.645484683583826,0,0.376484679085209,0,0,0,0,0.639337125799041,0.329851300186716,0.797854630486527,0.426224750532694,1.16083695451434,0.56738522469114,0.622822248995575,0,0,0,1.21079900526674,1.47311054395026,0.632924774881769,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0.222820913770347,0,0,0,0,0.130059347559878,0.493313713811028,0.552700035571697,0,0.14828656316206,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0.236777252044017,0,0,0,0,0,6.70700859703636,6.90457833955064,3.2529523714611,2.50668955317945,2.02785126545153,2.3858578411533,3.40644409211845,0.661743720148475,0.665188192387692,0.263504357079378,5.43563163315507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03366703667732,1.06729878806013,2.00832367658802,1.61131726843659,1.52054421143703,1.95249646038536,0,0,0.625098097988558,0,0.225222960966644,0,0,0,0,0,0,9.44246708221105,1.51956613997496,1.19168262731897,2.58152958673932,1.06400514659507,4.48542080113846,6.4049397437823,4.68668341992604,3.7345324247972,4.58016285036939,2.94231425604226,2.27036141467397,3.45705554687999,0.234321431833797,0,0,1.04614076386261,0.352303495931295,0,0.421352420106746,0.61246251376468,0.368502951935304,1.75653827998801,5.94001428641027,6.42894016124248,1.82032272387605,3.59309070908119,0.336672227908132,0.250237039743928,1.38532057742091,2.63386572528503,4.59731693698529,16.6764245386322,2.83580457900053,24.5763800893741,22.6370832147681,4.02670612203168,6.00182192168805,3.19462840639161,19.3230405034222,17.4949844951694,3.54430297706659,2.63079913935236,7.82544700156755,8.10039108052234,0.646584227275248,35.5009592516614,12.2917559837721,0.67824236924195,0.386521706326594,0,0,0,0,0,0,0.252320850875628,0,12.5159625863853,10.935095949279,4.14404764057442,2.78620756819187,1.44375896333917,6.50687400219141,12.8124364459357,8.19437501603839,7.72057809126758,8.49729831960384,8.30447166888838,7.41572194880904,6.47530834913642,11.1576675514453,5.90524363699719,2.80483547606892,3.7041661019826,1.47008711385542,58.3073160180422,91.4029311510192,88.0276960955292,0,0.245976877086227,6.17644117074692,0.109750285408626,0,0,0,0.977424915930974,0,0,0.695582429850461,7.16193034838512,2.02113026865503,0.462985512576611,3.42457474022277,0,0,0,0,0.148631162288728,0.93733833986777,0,0.141775097242386,0.268675568108545,0,0.766765358330422,0,0,0,0.144119953416961,0.12624243342638,0.253991577168676,0.381988425558278,0,3.4214489204541,0.308482478109971,0,0.285826432630578,1.23344192779897,2.61576041299968,0.95339771567235,37.3595258539978,7.15312891703765,2.535908257668,48.9326134516162,18.7213386440459,0.514414748524284,0,0.799266537048298,48.3265618564539,3.7983512377401,0,5.86325131728723,47.2671291827586,6.33561498346743,1.80863626235752,8.71533458600294,1.09970290300263,0,0,0,9.10574450868014,5.7430967917057,1.42636905040718,3.18518874668674,0.410952645100767,3.58121926479791,0.112085143993527,0,0,0,1.27047312111232,1.30139853857622,0,0.335032530668698,0.637938751653163,0,0,0,1.96306386750624,2.00068208423871,0.813795071099207,15.5978146148105,2.14114786556594,1.10391690523754,1.52283839490527,1.20378439891088,0,2.0694614258501,0,0,1.47702144595741,0.391602314925481,1.37257369524342,0,0,0,0,1.66435439510497,0,27.0437510522467,17.9550508747033,10.1037633995906,7.56020980608636,28.1438986986687,6.75586468803151,2.96836132889982,1.07946785661859,1.9531789784444,0.9033987161519,0.519254429183621,1.51073491997947,0,0.200506470303285,0,5.39627906373652,1.82091168006717,7.21184282276833,0.451199612907412,0.770153371044148,0,0,1.05551628892876,0,0.680374821106063,1.29549549661284,0,0.270946437543853,0,0.254876273045038,0.831076008928724,0.223874754722178,0,0,0,0.328014645699706,1.95227036798582,28.4393192147713,0.640986253728404,0.165018999841176,1.72279661398852,0.650060246036521,6.42735719376638,0.48335359146061,0.154048617114644,0.614014698904518,0.689182862422653,2.57808587683857,0.580066775656914,0.767039646744908,1.33548053470106,0.661139661443912,0.576570202095319,0.765676274967505,0.30347334256665,0,7.24068397710472,2.7881490806424,0.616067160352178,1.59691809095107,1.73986598415015,10.9341289271313,9.01686786474545,4.46590043231601,7.2767267685307,27.8320083128784,1.02359116524534,1.28381696410176,0.318203247925937,8.63443504219153,41.730410159329,15.6486106949551,10.131866601729,1.01091240786658,0,1.68503382495592,10.727942259971,3.65570234446927,1.05650146756755,7.37099521603123,10.322596532621,1.13008116620243,0.55136534354612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| ||
|short_description=p2@ITGA1 | |||
}} | }} |
Latest revision as of 02:20, 18 September 2015
Short description: | p2@ITGA1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_ITGA1_5end |
Coexpression cluster: | C1277_Hepatocyte_mature_mesenchymal_smooth_bladder_normal_cholangiocellular |
Association with transcript: | -84bp_to_NM_181501_5end |
EntrezGene: | ITGA1 |
HGNC: | 6134 |
UniProt: | P56199 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fat cell | 9.81e-09 | 15 |
smooth muscle cell | 1.42e-08 | 43 |
smooth muscle myoblast | 1.42e-08 | 43 |
fibroblast | 7.70e-08 | 76 |
muscle precursor cell | 4.48e-07 | 58 |
myoblast | 4.48e-07 | 58 |
multi-potent skeletal muscle stem cell | 4.48e-07 | 58 |
muscle cell | 6.29e-07 | 55 |