FFCP PHASE1:Hg19::chr13:79980143..79980165,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr13:79980143..79980165,-
|short_description=p4@RBM26
|description=CAGE_peak_4_at_RBM26_5end
|association_with_transcript=-178bp_to_ENST00000327303,ENST0000043...") |
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(12 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=64062 | |EntrezGene=64062 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20327 | |HGNC=20327 | ||
|TSSclassifier=strong | |||
|UniProt=Q5T8P6 | |UniProt=Q5T8P6 | ||
|association_with_transcript=-178bp_to_ENST00000327303,ENST00000438724_5end | |||
|cluster_id=chr13:79980143..79980165,- | |||
|description=CAGE_peak_4_at_RBM26_5end | |||
|id=chr13:79980143..79980165,- | |||
|ontology_enrichment_celltype=CL:0000037!1.29e-20!172;CL:0000566!1.29e-20!172;CL:0002032!1.92e-19!165;CL:0000837!1.92e-19!165;CL:0000988!4.33e-18!182;CL:0000738!8.47e-14!140;CL:0000542!2.18e-13!53;CL:0000051!2.18e-13!53;CL:0000838!6.23e-13!52;CL:0002031!7.21e-12!124;CL:0002087!7.96e-11!119;CL:0000763!5.45e-08!112;CL:0000049!5.45e-08!112;CL:0000084!4.63e-07!25;CL:0000827!4.63e-07!25 | |||
|ontology_enrichment_celltype_v019=CL:0000542;3.29e-07;53!CL:0000097;6.88e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,3.94e-20,168;CL:0000988,1.66e-19,177;CL:0002032,2.07e-17,161;CL:0000837,2.07e-17,161;CL:0000738,3.74e-13,136;CL:0000542,6.05e-13,53;CL:0000051,6.05e-13,53;CL:0000838,3.18e-12,52;CL:0002031,3.09e-09,120;CL:0002087,9.08e-09,115;CL:0000763,9.30e-07,108;CL:0000049,9.30e-07,108 | |||
|ontology_enrichment_development_v019=CL:0000051;3.29e-07;53 | |||
|ontology_enrichment_disease=DOID:2531!4.19e-09!51;DOID:0060083!4.19e-09!51;DOID:1240!6.79e-09!39;DOID:8692!2.69e-07!31 | |||
|ontology_enrichment_disease_v019=DOID:8692;4.09e-08;31!DOID:1240;9.75e-07;39 | |||
|ontology_enrichment_disease_v019_2=DOID:2531,1.23e-08,51;DOID:0060083,1.23e-08,51;DOID:1240,6.36e-08,39;DOID:8692,7.48e-08,31 | |||
|ontology_enrichment_uberon=UBERON:0007023!2.56e-09!115;UBERON:0002020!1.01e-08!34;UBERON:0003528!1.01e-08!34;UBERON:0001869!1.09e-08!32;UBERON:0001893!1.97e-08!34;UBERON:0002791!3.29e-08!33;UBERON:0003080!4.15e-08!42;UBERON:0002780!5.54e-08!41;UBERON:0001890!5.54e-08!41;UBERON:0006240!5.54e-08!41;UBERON:0002616!7.93e-07!59;UBERON:0000955!9.41e-07!69;UBERON:0006238!9.41e-07!69 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;5.29e-08;32!UBERON:0002791;5.31e-08;32!UBERON:0003528;5.79e-08;34!UBERON:0002020;5.79e-08;34!UBERON:0002619;4.76e-07;22!UBERON:0001893;6.34e-07;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003528,1.53e-09,34;UBERON:0002020,1.53e-09,34;UBERON:0002791,3.06e-09,32;UBERON:0001869,3.06e-09,32;UBERON:0001893,2.11e-08,34;UBERON:0002619,1.22e-07,22;UBERON:0002780,4.84e-07,41;UBERON:0001890,4.84e-07,41;UBERON:0003080,4.84e-07,41;UBERON:0006240,4.84e-07,41;UBERON:0000349,6.79e-07,5 | |||
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| ||
|short_description=p4@RBM26 | |||
}} | }} |
Latest revision as of 02:20, 18 September 2015
Short description: | p4@RBM26 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_RBM26_5end |
Coexpression cluster: | NA |
Association with transcript: | -178bp_to_ENST00000327303, ENST00000438724_5end |
EntrezGene: | RBM26 |
HGNC: | 20327 |
UniProt: | Q5T8P6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 3.94e-20 | 168 |
hematopoietic cell | 1.66e-19 | 177 |
hematopoietic oligopotent progenitor cell | 2.07e-17 | 161 |
hematopoietic multipotent progenitor cell | 2.07e-17 | 161 |
leukocyte | 3.74e-13 | 136 |
lymphocyte | 6.05e-13 | 53 |
common lymphoid progenitor | 6.05e-13 | 53 |
lymphoid lineage restricted progenitor cell | 3.18e-12 | 52 |
hematopoietic lineage restricted progenitor cell | 3.09e-09 | 120 |
nongranular leukocyte | 9.08e-09 | 115 |
myeloid cell | 9.30e-07 | 108 |
common myeloid progenitor | 9.30e-07 | 108 |
Ontology term | p-value | n |
---|---|---|
brain grey matter | 1.53e-09 | 34 |
gray matter | 1.53e-09 | 34 |
regional part of telencephalon | 3.06e-09 | 32 |
cerebral hemisphere | 3.06e-09 | 32 |
telencephalon | 2.11e-08 | 34 |
regional part of cerebral cortex | 1.22e-07 | 22 |
regional part of forebrain | 4.84e-07 | 41 |
forebrain | 4.84e-07 | 41 |
anterior neural tube | 4.84e-07 | 41 |
future forebrain | 4.84e-07 | 41 |
limbic system | 6.79e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 1.23e-08 | 51 |
immune system cancer | 1.23e-08 | 51 |
leukemia | 6.36e-08 | 39 |
myeloid leukemia | 7.48e-08 | 31 |